NO02G02850, NO02G02850 (gene) Nannochloropsis oceanica

Overview
NameNO02G02850
Unique NameNO02G02850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1243
Alignment locationchr2:767666..768908 +

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Properties
Property NameValue
DescriptionGolgi apparatus membrane protein TVP15
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:767666..768908 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013714Golgi_TVP15
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO02G02850 vs. NCBI_GenBank
Match: EWM30415.1 (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 308.1 bits (788), Expect = 2.600e-80
Identity = 168/229 (73.36%), Postives = 188/229 (82.10%), Query Frame = 0
Query:    1 MSDNGGFNPFAPRSGAGGGPGTVTGSKSTSPSTVHEPSWLKGASISSNPVATAQSASHVPIQPATLQPQAAAAAPAQQQPSGQTPQLVVYMRVANFGLCILMSAAAILTVIVPAGATPASWVLAFYVLAFSCLLCCFEFNIRQVAKHIANNFGFLYDAKSRATFLVFVGVLCFSLGVTGKIAGAAMIANALFNTFVLCKYPQYATNAPATTANQEAAGWLRRNPAVAQK 230
            MS +G  NPFA +SG  GGPG    ++  SP    EP+WL  A+ +S P   A  +SHVPIQPATLQPQAA        PSGQTP LV+YMRVANF LCILMSAAA+LTVIVPAGATPASWVLAFYVLAFSCLLCCFE N+R+VAKHIANNFGFLYDAKSRATFL+FVGVLCFSLG+TGK+AGAAMIANALFNT VLCKYPQYATNAP TTA QEAA +++RNP +A+K
Sbjct:    1 MSGSGEVNPFATQSGGDGGPG-AGRNRPPSPPRADEPAWL-NANAASPPSPAAPHSSHVPIQPATLQPQAAT---XXXPPSGQTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLGITGKVAGAAMIANALFNTVVLCKYPQYATNAPTTTAEQEAAQFMQRNPGLARK 224          
BLAST of NO02G02850 vs. NCBI_GenBank
Match: CBN77990.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 124.8 bits (312), Expect = 4.000e-25
Identity = 77/167 (46.11%), Postives = 104/167 (62.28%), Query Frame = 0
Query:   68 PQAAAAAP--AQQQPSGQTPQLVVYMRVANFGLCILMSAAAILTVIVPAGATPASWVLAFYVLAFSCLLCCFEFNIRQVAKHIANNFGFLYDAKSRATFLVFVGVLCFSLGV-TGKIAGAAMIANALFNTFVLCKYPQYATNAPATTANQEAAGWLRRNPAVAQKVG 232
            PQ AAAAP  A+ +   + PQL++YMRVAN  LC +++A A+L  ++ AG   A  VLA Y+ AFS     FE +++ VAK IA NFGFLY+AK RA FL+FVGVLCFSL      +AGA M+ NA+FN +V+ KYP++  +        E   +LR N     + G
Sbjct:   33 PQQAAAAPTAAELERQAKVPQLMIYMRVANIALCGILAATAVLK-LIGAGVDVAGAVLACYLCAFSXXXXXFETHLKVVAKTIAANFGFLYNAKGRAVFLIFVGVLCFSLNSDIAFVAGALMMVNAVFNFYVIFKYPEFERDLQRKDLESEGRDYLRANRGALAQAG 198          
BLAST of NO02G02850 vs. NCBI_GenBank
Match: XP_008908723.1 (hypothetical protein PPTG_13987 [Phytophthora parasitica INRA-310] >ETI42484.1 hypothetical protein F443_12393 [Phytophthora parasitica P1569] >ETK82507.1 hypothetical protein L915_12115 [Phytophthora parasitica] >ETL35891.1 hypothetical protein L916_12040 [Phytophthora parasitica] >ETL89125.1 hypothetical protein L917_11881 [Phytophthora parasitica] >ETM42383.1 hypothetical protein L914_11951 [Phytophthora parasitica] >ETN06221.1 hypothetical protein PPTG_13987 [Phytophthora parasitica INRA-310] >ETO71129.1 hypothetical protein F444_12493 [Phytophthora parasitica P1976] >ETP12223.1 hypothetical protein F441_12379 [Phytophthora parasitica CJ01A1] >ETP40329.1 hypothetical protein F442_12316 [Phytophthora parasitica P10297] >KUF85179.1 hypothetical protein AM588_10000831 [Phytophthora nicotianae] >KUF99667.1 hypothetical protein AM587_10002530 [Phytophthora nicotianae] >KUG00670.1 hypothetical protein AM587_10002258 [Phytophthora nicotianae])

HSP 1 Score: 90.9 bits (224), Expect = 6.400e-15
Identity = 56/158 (35.44%), Postives = 84/158 (53.16%), Query Frame = 0
Query:   83 QTPQLVVYMRVANFGLCILMSAAAILTVIVPAGATPASWVLAFYVLAFSCLLCCFEFNIRQVAKHIANNFGFLYDAKSRATFLVFVGVLCFSLG-VTGKIAGAAMIANALFNTFVLCKYPQYATNAPA--------TTANQEAAGWLRRNPAVAQKVG 232
            + P+L+ YMR+ N G  IL   A I+ +           +++ YV+ F  L   FE  + ++   I +NFGFLY  K RA F+ F+G L F +G     IAG  M  NA  N  V+C++PQ+ +   A        TT++QEAA ++ +NP +A K G
Sbjct:   39 ELPKLLRYMRLGNVGCSILQIIAGIVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVLMCFNAFINLLVMCRHPQFKSTLSADADPTAGYTTSSQEAANFMSKNPELAAKAG 196          
BLAST of NO02G02850 vs. NCBI_GenBank
Match: XP_002895560.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >XP_002895695.1 conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55122.1 conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55851.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 90.9 bits (224), Expect = 6.400e-15
Identity = 55/158 (34.81%), Postives = 84/158 (53.16%), Query Frame = 0
Query:   83 QTPQLVVYMRVANFGLCILMSAAAILTVIVPAGATPASWVLAFYVLAFSCLLCCFEFNIRQVAKHIANNFGFLYDAKSRATFLVFVGVLCFSLG-VTGKIAGAAMIANALFNTFVLCKYPQYATNAPA--------TTANQEAAGWLRRNPAVAQKVG 232
            + P+L+ YMR+ N G  IL   A ++ +           +++ YV+ F  L   FE  + ++   I +NFGFLY  K RA F+ F+G L F +G     IAG  M  NA  N  V+C++PQ+ +   A        TT++QEAA ++ +NP +A K G
Sbjct:   39 ELPKLLRYMRLGNVGCSILQIIAGVVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVLMCFNAFINLLVMCRHPQFKSTLSADADPTAGYTTSSQEAANFMNKNPELAAKAG 196          
BLAST of NO02G02850 vs. NCBI_GenBank
Match: XP_009530670.1 (hypothetical protein PHYSODRAFT_511445 [Phytophthora sojae] >EGZ13241.1 hypothetical protein PHYSODRAFT_511445 [Phytophthora sojae])

HSP 1 Score: 90.5 bits (223), Expect = 8.400e-15
Identity = 55/158 (34.81%), Postives = 84/158 (53.16%), Query Frame = 0
Query:   83 QTPQLVVYMRVANFGLCILMSAAAILTVIVPAGATPASWVLAFYVLAFSCLLCCFEFNIRQVAKHIANNFGFLYDAKSRATFLVFVGVLCFSLG-VTGKIAGAAMIANALFNTFVLCKYPQYATNAPA--------TTANQEAAGWLRRNPAVAQKVG 232
            + P+L+ YMR+ N G  IL   A ++ +           +++ YV+ F  L   FE  + ++   I +NFGFLY  K RA F+ F+G L F +G     IAG  M  NA  N  V+C++PQ+ ++  A        TT +QEAA ++ +NP +A K G
Sbjct:   39 ELPKLLRYMRLGNVGCSILQIIAGVVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVLMCFNAFINLLVMCRHPQFKSSLSADADPTAGYTTGSQEAANFMSKNPELAAKAG 196          
BLAST of NO02G02850 vs. NCBI_GenBank
Match: XP_009837082.1 (hypothetical protein H257_11759 [Aphanomyces astaci] >ETV73656.1 hypothetical protein H257_11759 [Aphanomyces astaci])

HSP 1 Score: 90.1 bits (222), Expect = 1.100e-14
Identity = 58/159 (36.48%), Postives = 83/159 (52.20%), Query Frame = 0
Query:   83 QTPQLVVYMRVANFGLCILMSAAAILTVIVPAGATPASWVLAFYVLAFSCLLCCFEFNIRQVAKHIANNFGFLYDAKSRATFLVFVGVLCFSLGVT-GKIAGAAMIANALFNTFVLCKYPQY------ATNAPA---TTANQEAAGWLRRNPAVAQKVG 232
            + P+++  MRV N G  +L   A I  +I          +++ YV+ F  L   FE  +  +   I  NFGFLY  K RA F+ F+G L F +  T G +AG  M  NAL N F++C++P++      A+  P    TT NQEAA +L  NP VA + G
Sbjct:   30 ELPKVLRLMRVCNVGCSLLQIIAGITGLISIVTLNITGGLVSVYVITFGLLFLLFECRLTSMETRIRRNFGFLYSYKGRAGFIFFIGFLDFGMNTTLGTVAGVFMCCNALLNLFIMCQHPEFKLGHISASADPTTGYTTGNQEAATYLSANPQVAMQAG 188          
BLAST of NO02G02850 vs. NCBI_GenBank
Match: OWZ11376.1 (Golgi apparatus membrane protein TVP15 [Phytophthora megakarya])

HSP 1 Score: 89.4 bits (220), Expect = 1.900e-14
Identity = 55/158 (34.81%), Postives = 84/158 (53.16%), Query Frame = 0
Query:   83 QTPQLVVYMRVANFGLCILMSAAAILTVIVPAGATPASWVLAFYVLAFSCLLCCFEFNIRQVAKHIANNFGFLYDAKSRATFLVFVGVLCFSLG-VTGKIAGAAMIANALFNTFVLCKYPQYATNAPA--------TTANQEAAGWLRRNPAVAQKVG 232
            + P+L+ YMR+ N G  IL   A I+ +           +++ YV+ F  L   FE  + ++   I +NFGFLY  K RA F+ F+G L F +G     IAG  M  NA  N  V+C++P++ +   A        TT++QEAA ++ +NP +A K G
Sbjct:   39 ELPKLLRYMRLGNVGCSILQIIAGIVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVLMCFNAFINLLVMCRHPEFKSTLGADSDPTAGYTTSSQEAANFMSKNPELAAKAG 196          
BLAST of NO02G02850 vs. NCBI_GenBank
Match: CCD28252.1 (golgi apparatus membrane protein TVP15, partial [Plasmopara viticola])

HSP 1 Score: 89.0 bits (219), Expect = 2.400e-14
Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = 0
Query:   83 QTPQLVVYMRVANFGLCILMSAAAILTVIVPAGATPASWVLAFYVLAFSCLLCCFEFNIRQVAKHIANNFGFLYDAKSRATFLVFVGVLCFSLG-VTGKIAGAAMIANALFNTFVLCKYPQYATNAPA--------TTANQEAAGWLRRNPAVAQKVG 232
            + P+L+ YMR+ N G  I+   A I+ +           +++ YV+ F  L   FE  + ++   I +NFGFLY  K RA F+ F+G L F +G     IAG  M  NA  N  V+C++P++ +   A        TT++QEAA ++ +NP +A K G
Sbjct:   38 ELPKLLRYMRLGNVGCSIIQIIAGIVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVFMCMNAFINLLVMCRHPEFKSTLSADADPTAGYTTSSQEAASFMSKNPELAAKAG 195          
BLAST of NO02G02850 vs. NCBI_GenBank
Match: XP_024579903.1 (Golgi apparatus membrane protein TVP15 [Plasmopara halstedii] >CEG43534.1 Golgi apparatus membrane protein TVP15 [Plasmopara halstedii])

HSP 1 Score: 89.0 bits (219), Expect = 2.400e-14
Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = 0
Query:   83 QTPQLVVYMRVANFGLCILMSAAAILTVIVPAGATPASWVLAFYVLAFSCLLCCFEFNIRQVAKHIANNFGFLYDAKSRATFLVFVGVLCFSLG-VTGKIAGAAMIANALFNTFVLCKYPQYATNAPA--------TTANQEAAGWLRRNPAVAQKVG 232
            + P+L+ YMR+ N G  I+   A I+ +           +++ YV+ F  L   FE  + ++   I +NFGFLY  K RA F+ F+G L F +G     IAG  M  NA  N  V+C++P++ +   A        TT++QEAA ++ +NP +A K G
Sbjct:   38 ELPKLLRYMRLGNVGCSIIQIIAGIVGITSFITLNITGTLVSIYVIMFGILFLLFECRLSRMETAIRSNFGFLYSYKGRAAFIFFIGFLDFGIGSALATIAGVLMCFNAFINLLVMCRHPEFKSTLSADADPTAGYTTSSQEAASFMSKNPELAAKAG 195          
BLAST of NO02G02850 vs. NCBI_GenBank
Match: XP_008876454.1 (hypothetical protein H310_11524 [Aphanomyces invadans] >ETV94863.1 hypothetical protein H310_11524 [Aphanomyces invadans])

HSP 1 Score: 88.6 bits (218), Expect = 3.200e-14
Identity = 59/179 (32.96%), Postives = 88/179 (49.16%), Query Frame = 0
Query:   63 PATLQPQAAAAAPAQQQPSGQTPQLVVYMRVANFGLCILMSAAAILTVIVPAGATPASWVLAFYVLAFSCLLCCFEFNIRQVAKHIANNFGFLYDAKSRATFLVFVGVLCFSLGVT-GKIAGAAMIANALFNTFVLCKYPQYAT---------NAPATTANQEAAGWLRRNPAVAQKVG 232
            P     + + AA      + + P+++  MRV N G  +L   A I  +I          +++ YV+ F  L   FE  +  +   I  NFGFLY  K RA F+ F+G L F +  T G +AG  M  NAL N F++C++P++ +          +  TT NQEAA +L  NP VA + G
Sbjct:    8 PPASPSKTSIAARINNVKTMELPKVLRLMRVCNVGCSLLQVIAGITGLISIVTLNVTGGLVSVYVITFGLLFLLFECRLSSMETRIRRNFGFLYSYKGRAAFIFFIGFLDFGMNTTLGTVAGVFMCCNALLNLFIMCQHPEFKSGHISASADPTSGYTTGNQEAAAYLNANPHVAMQAG 186          
The following BLAST results are available for this feature:
BLAST of NO02G02850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30415.12.600e-8073.36Golgi apparatus membrane protein TVP15 [Nannochlor... [more]
CBN77990.14.000e-2546.11conserved unknown protein [Ectocarpus siliculosus][more]
XP_008908723.16.400e-1535.44hypothetical protein PPTG_13987 [Phytophthora para... [more]
XP_002895560.16.400e-1534.81conserved hypothetical protein [Phytophthora infes... [more]
XP_009530670.18.400e-1534.81hypothetical protein PHYSODRAFT_511445 [Phytophtho... [more]
XP_009837082.11.100e-1436.48hypothetical protein H257_11759 [Aphanomyces astac... [more]
OWZ11376.11.900e-1434.81Golgi apparatus membrane protein TVP15 [Phytophtho... [more]
CCD28252.12.400e-1434.18golgi apparatus membrane protein TVP15, partial [P... [more]
XP_024579903.12.400e-1434.18Golgi apparatus membrane protein TVP15 [Plasmopara... [more]
XP_008876454.13.200e-1432.96hypothetical protein H310_11524 [Aphanomyces invad... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006930NSK006930Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02850.1NO02G02850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100026g18gene286Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02850.1NO02G02850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02850 ID=NO02G02850|Name=NO02G02850|organism=Nannochloropsis oceanica|type=gene|length=1243bp
ATGAGCGACAATGGAGGGTTCAACCCCTTCGCTCCAAGGgtaaggacatt
agcttttccctcttctctcttcctgtgaggccccatttccaaagcccagt
caaaatatgcttccttcattcctacatccatgctgaatcaccacaaccaa
atcacaagatagtagagctgatgatgggactcgtgccagcagcggcaagt
tcccatccccgtgcctcttacccgtttccccattcttacacaattactct
tttcccattttctgtcagAGCGGAGCTGGCGGCGGTCCTGGAACTGTGAC
AGGTAGCAAGTCTACATCCCCGTCCACTGTCCACGAGCCATCCTGGCTCA
AGGGTGCGTCAATCTCATCGAACCCGGTCGCGACTGCGCAATCCGCATCG
CATGTGCCGATTCAACCAGCCACGCTTCAGCCTCAAGCCGCCGCTGCCGC
TCCCGCTCAACAACAGCCGAGCGGCCAGACACCACAGCTTGTTGTGTATA
TGCGGGTAGCGAATTTCGGGCTTTGCATTCTGATGTCGGCAGCTGCTATT
CTGACTGTGATTGTACCTGCCGGTGCCACGCCTGCCTCGTGGGTGTTGGC
GTTCTATGTGCTgtgagtagacggagagtgcgggccgcgctgtctgatat
tttgctccttttgtttccatcgggtttatgtagcgtctctgatggcttgt
ctcacatagatattgtccatttcttgtagtccatcatttatcatttcccc
acgacactgctgcttctatgagcgctctccttaatctttcctctgccctt
ccttccctccctccctccctcccttctacagCGCCTTCTCCTGCCTCCTC
TGCTGCTTTGAATTCAACATCCGGCAAGTCGCTAAGCACATCGCCAACAA
TTTCGGCTTTCTCTACGACGCTAAATCCCGCGCGACCTTCCTAGTCTTCG
TGGGTGTCCTCTGCTTCTCCCTGGGAGTTACCGGCAAAATAGCTGGGGCA
GCCATGATTGCCAATGCCTTGTTCAACACCTTTGTCTTATGTAAATATCC
TCAATATGCAACCAATGCGCCCGCCACCACCGCGAACCAAGAAGCCGCCG
GGTGGTTGCGGCGAAATCCAGCCGTGGCGCAAAAAGTGGGGGGGGCCGTG
ATTGGTGCCGCCGTAAGCAGTCAATCAATAGGAACAGGAGCAGGGGGAGG
AGCGGCGGCGGGAGGGAACGCGGCTAGGAGTTCATGGATTTAG
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protein sequence of NO02G02850.1

>NO02G02850.1-protein ID=NO02G02850.1-protein|Name=NO02G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MSDNGGFNPFAPRSGAGGGPGTVTGSKSTSPSTVHEPSWLKGASISSNPV
ATAQSASHVPIQPATLQPQAAAAAPAQQQPSGQTPQLVVYMRVANFGLCI
LMSAAAILTVIVPAGATPASWVLAFYVLAFSCLLCCFEFNIRQVAKHIAN
NFGFLYDAKSRATFLVFVGVLCFSLGVTGKIAGAAMIANALFNTFVLCKY
PQYATNAPATTANQEAAGWLRRNPAVAQKVGGAVIGAAVSSQSIGTGAGG
GAAAGGNAARSSWI*
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Synonyms
Publications