NO02G02850.1, NO02G02850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02850.1
Unique NameNO02G02850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length795
Alignment locationchr2:767666..768908 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:767666..768908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02850.1 vs.
Match: EWM30415.1 (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana])

HSP 1 Score: 310.8 bits (795), Expect = 4.000e-81
Identity = 169/229 (73.80%), Postives = 189/229 (82.53%), Query Frame = 0 
Query:    1 MSDNGGFNPFAPRSGAGGGPGTVTGSKSTSPSTVHEPSWLKGASISSNPVATAQSASHVPIQPATLQPQAAAAAPAQQQPSGQTPQLVVYMRVANFGLCILMSAAAILTVIVPAGATPASWVLAFYVLAFSCLLCCFEFNIRQVAKHIANNFGFLYDAKSRATFLVFVGVLCFSLGVTGKIAGAAMIANALFNTFVLCKYPQYATNAPATTANQEAAGWLRRNPAVAQK 230
            MS +G  NPFA +SG  GGPG    ++  SP    EP+WL  A+ +S P   A  +SHVPIQPATLQPQAA      Q PSGQTP LV+YMRVANF LCILMSAAA+LTVIVPAGATPASWVLAFYVLAFSCLLCCFE N+R+VAKHIANNFGFLYDAKSRATFL+FVGVLCFSLG+TGK+AGAAMIANALFNT VLCKYPQYATNAP TTA QEAA +++RNP +A+K
Sbjct:    1 MSGSGEVNPFATQSGGDGGPGAGR-NRPPSPPRADEPAWLN-ANAASPPSPAAPHSSHVPIQPATLQPQAATQP---QPPSGQTPPLVIYMRVANFALCILMSAAAVLTVIVPAGATPASWVLAFYVLAFSCLLCCFEVNLRRVAKHIANNFGFLYDAKSRATFLIFVGVLCFSLGITGKVAGAAMIANALFNTVVLCKYPQYATNAPTTTAEQEAAQFMQRNPGLARK 224
The following BLAST results are available for this feature:
BLAST of NO02G02850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30415.14.000e-8173.80Golgi apparatus membrane protein TVP15 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02850NO02G02850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02850.1NO02G02850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02850.1.cds1NO02G02850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02850.1.cds2NO02G02850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02850.1.cds3NO02G02850.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02850.1 ID=NO02G02850.1|Name=NO02G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=795bp
ATGAGCGACAATGGAGGGTTCAACCCCTTCGCTCCAAGGAGCGGAGCTGG
CGGCGGTCCTGGAACTGTGACAGGTAGCAAGTCTACATCCCCGTCCACTG
TCCACGAGCCATCCTGGCTCAAGGGTGCGTCAATCTCATCGAACCCGGTC
GCGACTGCGCAATCCGCATCGCATGTGCCGATTCAACCAGCCACGCTTCA
GCCTCAAGCCGCCGCTGCCGCTCCCGCTCAACAACAGCCGAGCGGCCAGA
CACCACAGCTTGTTGTGTATATGCGGGTAGCGAATTTCGGGCTTTGCATT
CTGATGTCGGCAGCTGCTATTCTGACTGTGATTGTACCTGCCGGTGCCAC
GCCTGCCTCGTGGGTGTTGGCGTTCTATGTGCTCGCCTTCTCCTGCCTCC
TCTGCTGCTTTGAATTCAACATCCGGCAAGTCGCTAAGCACATCGCCAAC
AATTTCGGCTTTCTCTACGACGCTAAATCCCGCGCGACCTTCCTAGTCTT
CGTGGGTGTCCTCTGCTTCTCCCTGGGAGTTACCGGCAAAATAGCTGGGG
CAGCCATGATTGCCAATGCCTTGTTCAACACCTTTGTCTTATGTAAATAT
CCTCAATATGCAACCAATGCGCCCGCCACCACCGCGAACCAAGAAGCCGC
CGGGTGGTTGCGGCGAAATCCAGCCGTGGCGCAAAAAGTGGGGGGGGCCG
TGATTGGTGCCGCCGTAAGCAGTCAATCAATAGGAACAGGAGCAGGGGGA
GGAGCGGCGGCGGGAGGGAACGCGGCTAGGAGTTCATGGATTTAG
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protein sequence of NO02G02850.1

>NO02G02850.1-protein ID=NO02G02850.1-protein|Name=NO02G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MSDNGGFNPFAPRSGAGGGPGTVTGSKSTSPSTVHEPSWLKGASISSNPV
ATAQSASHVPIQPATLQPQAAAAAPAQQQPSGQTPQLVVYMRVANFGLCI
LMSAAAILTVIVPAGATPASWVLAFYVLAFSCLLCCFEFNIRQVAKHIAN
NFGFLYDAKSRATFLVFVGVLCFSLGVTGKIAGAAMIANALFNTFVLCKY
PQYATNAPATTANQEAAGWLRRNPAVAQKVGGAVIGAAVSSQSIGTGAGG
GAAAGGNAARSSWI*
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mRNA from alignment at chr2:767666..768908+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02850.1 ID=NO02G02850.1|Name=NO02G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp|location=Sequence derived from alignment at chr2:767666..768908+ (Nannochloropsis oceanica)
ATGAGCGACAATGGAGGGTTCAACCCCTTCGCTCCAAGGGTAAGGACATT
AGCTTTTCCCTCTTCTCTCTTCCTGTGAGGCCCCATTTCCAAAGCCCAGT
CAAAATATGCTTCCTTCATTCCTACATCCATGCTGAATCACCACAACCAA
ATCACAAGATAGTAGAGCTGATGATGGGACTCGTGCCAGCAGCGGCAAGT
TCCCATCCCCGTGCCTCTTACCCGTTTCCCCATTCTTACACAATTACTCT
TTTCCCATTTTCTGTCAGAGCGGAGCTGGCGGCGGTCCTGGAACTGTGAC
AGGTAGCAAGTCTACATCCCCGTCCACTGTCCACGAGCCATCCTGGCTCA
AGGGTGCGTCAATCTCATCGAACCCGGTCGCGACTGCGCAATCCGCATCG
CATGTGCCGATTCAACCAGCCACGCTTCAGCCTCAAGCCGCCGCTGCCGC
TCCCGCTCAACAACAGCCGAGCGGCCAGACACCACAGCTTGTTGTGTATA
TGCGGGTAGCGAATTTCGGGCTTTGCATTCTGATGTCGGCAGCTGCTATT
CTGACTGTGATTGTACCTGCCGGTGCCACGCCTGCCTCGTGGGTGTTGGC
GTTCTATGTGCTGTGAGTAGACGGAGAGTGCGGGCCGCGCTGTCTGATAT
TTTGCTCCTTTTGTTTCCATCGGGTTTATGTAGCGTCTCTGATGGCTTGT
CTCACATAGATATTGTCCATTTCTTGTAGTCCATCATTTATCATTTCCCC
ACGACACTGCTGCTTCTATGAGCGCTCTCCTTAATCTTTCCTCTGCCCTT
CCTTCCCTCCCTCCCTCCCTCCCTTCTACAGCGCCTTCTCCTGCCTCCTC
TGCTGCTTTGAATTCAACATCCGGCAAGTCGCTAAGCACATCGCCAACAA
TTTCGGCTTTCTCTACGACGCTAAATCCCGCGCGACCTTCCTAGTCTTCG
TGGGTGTCCTCTGCTTCTCCCTGGGAGTTACCGGCAAAATAGCTGGGGCA
GCCATGATTGCCAATGCCTTGTTCAACACCTTTGTCTTATGTAAATATCC
TCAATATGCAACCAATGCGCCCGCCACCACCGCGAACCAAGAAGCCGCCG
GGTGGTTGCGGCGAAATCCAGCCGTGGCGCAAAAAGTGGGGGGGGCCGTG
ATTGGTGCCGCCGTAAGCAGTCAATCAATAGGAACAGGAGCAGGGGGAGG
AGCGGCGGCGGGAGGGAACGCGGCTAGGAGTTCATGGATTTAG
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Coding sequence (CDS) from alignment at chr2:767666..768908+

>NO02G02850.1 ID=NO02G02850.1|Name=NO02G02850.1|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at chr2:767666..768908+ (Nannochloropsis oceanica)
ATGAGCGACAATGGAGGGTTCAACCCCTTCGCTCCAAGGAGCGGAGCTGG
CGGCGGTCCTGGAACTGTGACAGGTAGCAAGTCTACATCCCCGTCCACTG
TCCACGAGCCATCCTGGCTCAAGGGTGCGTCAATCTCATCGAACCCGGTC
GCGACTGCGCAATCCGCATCGCATGTGCCGATTCAACCAGCCACGCTTCA
GCCTCAAGCCGCCGCTGCCGCTCCCGCTCAACAACAGCCGAGCGGCCAGA
CACCACAGCTTGTTGTGTATATGCGGGTAGCGAATTTCGGGCTTTGCATT
CTGATGTCGGCAGCTGCTATTCTGACTGTGATTGTACCTGCCGGTGCCAC
GCCTGCCTCGTGGGTGTTGGCGTTCTATGTGCTCGCCTTCTCCTGCCTCC
TCTGCTGCTTTGAATTCAACATCCGGCAAGTCGCTAAGCACATCGCCAAC
AATTTCGGCTTTCTCTACGACGCTAAATCCCGCGCGACCTTCCTAGTCTT
CGTGGGTGTCCTCTGCTTCTCCCTGGGAGTTACCGGCAAAATAGCTGGGG
CAGCCATGATTGCCAATGCCTTGTTCAACACCTTTGTCTTATGTAAATAT
CCTCAATATGCAACCAATGCGCCCGCCACCACCGCGAACCAAGAAGCCGC
CGGGTGGTTGCGGCGAAATCCAGCCGTGGCGCAAAAAGTGGGGGGGGCCG
TGATTGGTGCCGCCGTAAGCAGTCAATCAATAGGAACAGGAGCAGGGGGA
GGAGCGGCGGCGGGAGGGAACGCGGCTAGGAGTTCATGGATTTAG
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Synonyms
Publications