NO02G02810, NO02G02810 (gene) Nannochloropsis oceanica

Overview
NameNO02G02810
Unique NameNO02G02810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1917
Alignment locationchr2:761726..763642 +

Link to JBrowse

Properties
Property NameValue
Description60s ribosomal protein l24
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:761726..763642 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000988Ribosomal_L24e-rel
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Homology
[Close]
BLAST of NO02G02810 vs. NCBI_GenBank
Match: EWM30387.1 (60s ribosomal protein l24 [Nannochloropsis gaditana])

HSP 1 Score: 190.7 bits (483), Expect = 4.700e-45
Identity = 95/98 (96.94%), Postives = 98/98 (100.00%), Query Frame = 0 
Query:   52 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEVQKRRSRRTTKFQRAIVGASLDEIKKKRAQ 150
            MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEE+QKRR+RRTTKFQRAIVGASL+EIKKKRAQ
Sbjct:    1 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQ 98
[Close]
BLAST of NO02G02810 vs. NCBI_GenBank
Match: CBJ29184.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 137.1 bits (344), Expect = 6.100e-29
Identity = 65/98 (66.33%), Postives = 81/98 (82.65%), Query Frame = 0 
Query:   52 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEVQKRRSRRTTKFQRAIVGASLDEIKKKRAQ 150
            MVIKT++C+FS+ R+YPGHG+RF+RRD   +   +AK K L  QRKK A+L WTQ WRRL+KKIKVEEV +RR+R+TTK  RAIVGASL+EIKKKR+Q
Sbjct:    1 MVIKTEVCAFSDTRIYPGHGVRFIRRDGQPITLFSAKCKSLLKQRKKPAKLTWTQAWRRLNKKIKVEEVTRRRTRKTTKLNRAIVGASLEEIKKKRSQ 98
[Close]
BLAST of NO02G02810 vs. NCBI_GenBank
Match: XP_024585457.1 (60s ribosomal protein [Plasmopara halstedii] >CEG49088.1 60s ribosomal protein [Plasmopara halstedii])

HSP 1 Score: 136.3 bits (342), Expect = 1.000e-28
Identity = 64/98 (65.31%), Postives = 81/98 (82.65%), Query Frame = 0 
Query:   52 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEVQKRRSRRTTKFQRAIVGASLDEIKKKRAQ 150
            MVIKT+ CSFSE R+YPGHG R++RRD +  VF  AK+K L+ QRKKA ++VWT GWRR++KK+KVEEV +RR+R+TTK QRAIVG S D+I+KKR Q
Sbjct:    1 MVIKTETCSFSESRIYPGHGSRYIRRDGSAYVFINAKSKSLFLQRKKATKIVWTLGWRRMNKKLKVEEVSRRRARKTTKIQRAIVGVSADDIRKKRNQ 98
[Close]
BLAST of NO02G02810 vs. NCBI_GenBank
Match: XP_009526477.1 (hypothetical protein PHYSODRAFT_354582 [Phytophthora sojae] >EGZ17419.1 hypothetical protein PHYSODRAFT_354582 [Phytophthora sojae])

HSP 1 Score: 134.8 bits (338), Expect = 3.000e-28
Identity = 63/98 (64.29%), Postives = 81/98 (82.65%), Query Frame = 0 
Query:   52 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEVQKRRSRRTTKFQRAIVGASLDEIKKKRAQ 150
            MVIKT+ CSFSE R+YPGHG RF+RRD +  VF  +K+K L+ QRKKA ++VWT GWRR++KK+KVEEV +RR+R+TTK QRAIVG S ++I+KKR Q
Sbjct:    1 MVIKTETCSFSESRIYPGHGSRFIRRDGSAYVFINSKSKSLFMQRKKATKIVWTLGWRRMNKKLKVEEVARRRARKTTKIQRAIVGVSAEDIRKKRNQ 98
[Close]
BLAST of NO02G02810 vs. NCBI_GenBank
Match: XP_008892912.1 (hypothetical protein PPTG_01387 [Phytophthora parasitica INRA-310] >ETI45575.1 hypothetical protein F443_09879 [Phytophthora parasitica P1569] >ETK85527.1 hypothetical protein L915_09677 [Phytophthora parasitica] >ETL38966.1 hypothetical protein L916_09581 [Phytophthora parasitica] >ETL92087.1 hypothetical protein L917_09506 [Phytophthora parasitica] >ETM45386.1 hypothetical protein L914_09545 [Phytophthora parasitica] >ETN21081.1 hypothetical protein PPTG_01387 [Phytophthora parasitica INRA-310] >ETO74219.1 hypothetical protein F444_09973 [Phytophthora parasitica P1976] >ETP15383.1 hypothetical protein F441_09829 [Phytophthora parasitica CJ01A1] >ETP43470.1 hypothetical protein F442_09784 [Phytophthora parasitica P10297] >KUF79517.1 60S ribosomal protein L24 [Phytophthora nicotianae])

HSP 1 Score: 133.3 bits (334), Expect = 8.800e-28
Identity = 62/98 (63.27%), Postives = 80/98 (81.63%), Query Frame = 0 
Query:   52 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEVQKRRSRRTTKFQRAIVGASLDEIKKKRAQ 150
            MVIKT+ CSFSE R+YPGHG R++RRD    VF  +K+K L+ QRKKA ++VWT GWRR++KK+KVEEV +RR+R+TTK QRAIVG S ++I+KKR Q
Sbjct:    1 MVIKTETCSFSESRIYPGHGSRYIRRDGTAYVFINSKSKSLFMQRKKATKIVWTLGWRRMNKKLKVEEVTRRRARKTTKIQRAIVGVSAEDIRKKRNQ 98
[Close]
BLAST of NO02G02810 vs. NCBI_GenBank
Match: XP_002896997.1 (60S ribosomal protein L24, putative [Phytophthora infestans T30-4] >EEY66478.1 60S ribosomal protein L24, putative [Phytophthora infestans T30-4])

HSP 1 Score: 133.3 bits (334), Expect = 8.800e-28
Identity = 62/98 (63.27%), Postives = 80/98 (81.63%), Query Frame = 0 
Query:   52 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEVQKRRSRRTTKFQRAIVGASLDEIKKKRAQ 150
            MVIKT+ CSFSE R+YPGHG R++RRD    VF  +K+K L+ QRKKA ++VWT GWRR++KK+KVEEV +RR+R+TTK QRAIVG S ++I+KKR Q
Sbjct:    1 MVIKTETCSFSESRIYPGHGSRYIRRDGTAYVFLNSKSKSLFMQRKKATKIVWTLGWRRMNKKLKVEEVTRRRARKTTKIQRAIVGVSAEDIRKKRNQ 98
[Close]
BLAST of NO02G02810 vs. NCBI_GenBank
Match: OQS01260.1 (60S ribosomal protein L24 [Achlya hypogyna])

HSP 1 Score: 128.3 bits (321), Expect = 2.800e-26
Identity = 59/104 (56.73%), Postives = 79/104 (75.96%), Query Frame = 0 
Query:   46 SSSQGKMVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEVQKRRSRRTTKFQRAIVGASLDEIKKKRAQ 150
            S    K+V +TD C+FSE R+YPGHG R +R+D    +   +K K L+ QRKK A++VWT GWRR++KK++VEEV +RR+R+TTK QRAIVG S+DE+KKKR Q
Sbjct:  453 SFGSAKLVCRTDTCAFSESRIYPGHGSRLIRKDGNAFMLLNSKCKSLFLQRKKPAKIVWTLGWRRMNKKLRVEEVSRRRARKTTKIQRAIVGVSVDELKKKRNQ 556
[Close]
BLAST of NO02G02810 vs. NCBI_GenBank
Match: GAX93688.1 (60S ribosomal protein L24, putative [Pythium insidiosum])

HSP 1 Score: 128.3 bits (321), Expect = 2.800e-26
Identity = 61/98 (62.24%), Postives = 77/98 (78.57%), Query Frame = 0 
Query:   52 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEVQKRRSRRTTKFQRAIVGASLDEIKKKRAQ 150
            MVIKT+ CSFSE R+YPGHG R+VRRD     F  +K+K L+ QRKK  ++VWT GWRR++KKIKVEEV +RR+R+T K QRAI+G S D+I+KKR Q
Sbjct:    1 MVIKTETCSFSEGRIYPGHGSRYVRRDGTVYTFINSKSKSLFLQRKKPTKIVWTLGWRRMNKKIKVEEVARRRTRKTAKVQRAILGVSADDIRKKRNQ 98
[Close]
BLAST of NO02G02810 vs. NCBI_GenBank
Match: GAX92139.1 (protein arginine N-methyltransferase 1 [Pythium insidiosum])

HSP 1 Score: 128.3 bits (321), Expect = 2.800e-26
Identity = 61/98 (62.24%), Postives = 77/98 (78.57%), Query Frame = 0 
Query:   52 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEVQKRRSRRTTKFQRAIVGASLDEIKKKRAQ 150
            MVIKT+ CSFSE R+YPGHG R+VRRD     F  +K+K L+ QRKK  ++VWT GWRR++KKIKVEEV +RR+R+T K QRAI+G S D+I+KKR Q
Sbjct:    1 MVIKTETCSFSEGRIYPGHGSRYVRRDGTVYTFINSKSKSLFLQRKKPTKIVWTLGWRRMNKKIKVEEVARRRTRKTAKVQRAILGVSADDIRKKRNQ 98
[Close]
BLAST of NO02G02810 vs. NCBI_GenBank
Match: XP_008613094.1 (50S ribosomal protein L24e [Saprolegnia diclina VS20] >EQC33454.1 50S ribosomal protein L24e [Saprolegnia diclina VS20])

HSP 1 Score: 126.7 bits (317), Expect = 8.300e-26
Identity = 58/98 (59.18%), Postives = 78/98 (79.59%), Query Frame = 0 
Query:   52 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEVQKRRSRRTTKFQRAIVGASLDEIKKKRAQ 150
            MVIKTD C+FSE R+YPGHG R +R+D    +   +K K L+ QRKK A++VWT GWRR++KK++VEEV +RR+R+TTK QRAIVG S++++KKKR Q
Sbjct:    1 MVIKTDTCAFSESRIYPGHGTRLIRKDGNAFMLLNSKCKSLFLQRKKPAKIVWTLGWRRMNKKLRVEEVSRRRARKTTKIQRAIVGVSVEDLKKKRNQ 98
The following BLAST results are available for this feature:
BLAST of NO02G02810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30387.14.700e-4596.9460s ribosomal protein l24 [Nannochloropsis gaditan... [more]
CBJ29184.16.100e-2966.33conserved unknown protein [Ectocarpus siliculosus][more]
XP_024585457.11.000e-2865.3160s ribosomal protein [Plasmopara halstedii] >CEG4... [more]
XP_009526477.13.000e-2864.29hypothetical protein PHYSODRAFT_354582 [Phytophtho... [more]
XP_008892912.18.800e-2863.27hypothetical protein PPTG_01387 [Phytophthora para... [more]
XP_002896997.18.800e-2863.2760S ribosomal protein L24, putative [Phytophthora ... [more]
OQS01260.12.800e-2656.7360S ribosomal protein L24 [Achlya hypogyna][more]
GAX93688.12.800e-2662.2460S ribosomal protein L24, putative [Pythium insid... [more]
GAX92139.12.800e-2662.24protein arginine N-methyltransferase 1 [Pythium in... [more]
XP_008613094.18.300e-2659.1850S ribosomal protein L24e [Saprolegnia diclina VS... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006928NSK006928Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02810.1NO02G02810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100026g22gene283Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02810.1NO02G02810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02810 ID=NO02G02810|Name=NO02G02810|organism=Nannochloropsis oceanica|type=gene|length=1917bp
GGGAGGCCTCTTGTCTCCTGCCCCTTACGCCATCTTCCCATGCGTAAGAA
GACTCTATGTGCAGGCATGAGAATGCAGAGGAGTATAGGGTGGGTATGGG
AATGCGTGTCTGACTTTGGTTGGTTTAACTTTATGCTTTCACGCAGCACC
ACTCACCCCTTCTTCCTCCCCTCCTCCCTCTCTTTTTCTTCTCTTCCCCT
AACATAGGTAAGGCACAAAGGCAACAATACTTGGACCGAGTGGTTGTCAT
CAGCTGCGTGACACACATTCGGAAAGAGAGATAGACGTCACTGTATTGGG
ATCGGGTGGAGGAGAGAGGGCTAGCAACTGCGGAGTGTCCGCGGTGTGCG
GCGGGAAGCATGCAGGGGGGAGAGCAGCGACGGGCAGCCCGTCATCATCC
ATTGAGCATTAACTCATTGAAGGGGCATGGAGGCACATTACACAATATTC
ATGAGGAATGGGCGTAGCATAGATTATTATGGAGTTTGTTCCTGGAAAGC
CCCTTGGCTTGCGGTTCTGTGGCGATGACGATGTGGCCCCCTTACCCCTT
CTATGTCTTACTTTTTCAACTTTCCTTTTCCTTATATTCCTTCCCCACCT
CGCTCACAGTTTTTCTTCTAGCCAGGGGAAAATGGTGATTAAGACAGACA
TGTGCAGCTTCTCGGAGTACCGGgtacgtaaagggtcgggcagtgggcag
gaggaagggaaagagtagggggtgccttcgatcttgtcacgccacgccta
ttcgtcctttttgctcgttatctgctttatagtagtgcgaatagcagagc
atatactgtacttctcatcatcctccctcccgtctctttgtagGTGTACC
CCGGACATGGCATTCGATTCGTGCGCCGTGACAGTGCCACCCTCGTCTTC
TCCACCGCCAAGACCAAGGGCCTGTACAACCAACGCAAGAAGGCCGCCCG
CCTCGTTTGGACGCAAGGCTGGCGCCGACTGCACAAGAAGATCAAGGTGG
AGGAGGTGCAAAAGCGTCGTAGCCGAAGGACGACCAAGTTCCAGCGGGCG
ATCGTGGGGGCTTCCTTGGATGAGATCAAGAAGAAGCGTGCCCAGAAACC
GGCGGgtacgttttatccttgaagcacggttatgggaaaagaaataaaag
gatggagagggagctgtcatgatctttggggtagaggagggagctgtcat
gatgtttccgaatgatcattattttgaatcttgtatatgtgccttgtgct
tacgtgtctcgtaaaaaccaaccccttacccctcaattccctccatcgta
tcacccacccacaacagAGCGTAGCGCTCAGCGTGAGGCGGCCTTAAAAG
AGGTGAAGGAGCGCGCGAAGGCCCTCAAGGCGAAGCAGGCTAAGAACAAG
TCTGCCGGCGGCGCCGCCGGGGGCAGCAAGCAGGCCAGCAAGACCAAGAC
GGCGGTCAAGGCGCGTGGCACCCAGCGTTAAGAAACCTCTAGGAGGAATA
TGAGAGGAGTGATGAGAAAAGGGATGGGAGGAGGAAGGGTTGAAGCCGTG
AGGTGTCTTCATGGATTGTTTGAGAGGAGGAAACCCCAACCAGTTGGCTA
AGGAGTGACTATTCCAAGGGTGGCCAAAGGAAAGGGAAACCCTACAAGAA
GAACACTTGGAAGTCAGAAATGACGACGGGAGGTAGAACCATTGAGTCGG
ACGACGCTACTTCCACTGTTATTTTCTGCTTTTCGACCGATGGCTGTTCG
GCGTGGGGTGTGTGCGAACGGCCTTTTTCTTATCTTGACTTTATTACCCC
TCCAGACCTCACTATCATTCCTTCCCTTCCTCCCTACCCCCTCTCCCCTT
TCCTGCATCTAACGAGGAAGCAAAAGGGCACAATGTACATCAAATGTGTA
CGTACTCCTCCTCCTAT
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protein sequence of NO02G02810.1

>NO02G02810.1-protein ID=NO02G02810.1-protein|Name=NO02G02810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MEFVPGKPLGLRFCGDDDVAPLPLLCLTFSTFLFLIFLPHLAHSFSSSQG
KMVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAA
RLVWTQGWRRLHKKIKVEEVQKRRSRRTTKFQRAIVGASLDEIKKKRAQK
PAERSAQREAALKEVKERAKALKAKQAKNKSAGGAAGGSKQASKTKTAVK
ARGTQR*
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Synonyms
Publications