NO02G02810.1, NO02G02810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02810.1
Unique NameNO02G02810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1535
Alignment locationchr2:761726..763642 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:761726..763642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G02810.1 vs.
Match: EWM30387.1 (60s ribosomal protein l24 [Nannochloropsis gaditana])

HSP 1 Score: 257.3 bits (656), Expect = 4.100e-65
Identity = 143/155 (92.26%), Postives = 148/155 (95.48%), Query Frame = 0 
Query:   52 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEVQKRRSRRTTKFQRAIVGASLDEIKKKRAQKPAERSAQREAALKEVKERAKALKAKQAKNKSAGGAAGGSKQASKTKTAVKARGTQR 207
            MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEE+QKRR+RRTTKFQRAIVGASL+EIKKKRAQKP ER+AQREAALKEVKERAKA+KAKQAK K AG AAGGSKQASKTK A K RGTQR
Sbjct:    1 MVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAARLVWTQGWRRLHKKIKVEEIQKRRTRRTTKFQRAIVGASLEEIKKKRAQKP-ERNAQREAALKEVKERAKAMKAKQAKMKPAGAAAGGSKQASKTKAAPKGRGTQR 154
The following BLAST results are available for this feature:
BLAST of NO02G02810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30387.14.100e-6592.2660s ribosomal protein l24 [Nannochloropsis gaditan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02810NO02G02810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02810.1NO02G02810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02810.1.cds1NO02G02810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02810.1.cds2NO02G02810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02810.1.cds3NO02G02810.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02810.1 ID=NO02G02810.1|Name=NO02G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1535bp
GGGAGGCCTCTTGTCTCCTGCCCCTTACGCCATCTTCCCATGCGTAAGAA
GACTCTATGTGCAGGCATGAGAATGCAGAGGAGTATAGGGTGGGTATGGG
AATGCGTGTCTGACTTTGGTTGGTTTAACTTTATGCTTTCACGCAGCACC
ACTCACCCCTTCTTCCTCCCCTCCTCCCTCTCTTTTTCTTCTCTTCCCCT
AACATAGGTAAGGCACAAAGGCAACAATACTTGGACCGAGTGGTTGTCAT
CAGCTGCGTGACACACATTCGGAAAGAGAGATAGACGTCACTGTATTGGG
ATCGGGTGGAGGAGAGAGGGCTAGCAACTGCGGAGTGTCCGCGGTGTGCG
GCGGGAAGCATGCAGGGGGGAGAGCAGCGACGGGCAGCCCGTCATCATCC
ATTGAGCATTAACTCATTGAAGGGGCATGGAGGCACATTACACAATATTC
ATGAGGAATGGGCGTAGCATAGATTATTATGGAGTTTGTTCCTGGAAAGC
CCCTTGGCTTGCGGTTCTGTGGCGATGACGATGTGGCCCCCTTACCCCTT
CTATGTCTTACTTTTTCAACTTTCCTTTTCCTTATATTCCTTCCCCACCT
CGCTCACAGTTTTTCTTCTAGCCAGGGGAAAATGGTGATTAAGACAGACA
TGTGCAGCTTCTCGGAGTACCGGGTGTACCCCGGACATGGCATTCGATTC
GTGCGCCGTGACAGTGCCACCCTCGTCTTCTCCACCGCCAAGACCAAGGG
CCTGTACAACCAACGCAAGAAGGCCGCCCGCCTCGTTTGGACGCAAGGCT
GGCGCCGACTGCACAAGAAGATCAAGGTGGAGGAGGTGCAAAAGCGTCGT
AGCCGAAGGACGACCAAGTTCCAGCGGGCGATCGTGGGGGCTTCCTTGGA
TGAGATCAAGAAGAAGCGTGCCCAGAAACCGGCGGAGCGTAGCGCTCAGC
GTGAGGCGGCCTTAAAAGAGGTGAAGGAGCGCGCGAAGGCCCTCAAGGCG
AAGCAGGCTAAGAACAAGTCTGCCGGCGGCGCCGCCGGGGGCAGCAAGCA
GGCCAGCAAGACCAAGACGGCGGTCAAGGCGCGTGGCACCCAGCGTTAAG
AAACCTCTAGGAGGAATATGAGAGGAGTGATGAGAAAAGGGATGGGAGGA
GGAAGGGTTGAAGCCGTGAGGTGTCTTCATGGATTGTTTGAGAGGAGGAA
ACCCCAACCAGTTGGCTAAGGAGTGACTATTCCAAGGGTGGCCAAAGGAA
AGGGAAACCCTACAAGAAGAACACTTGGAAGTCAGAAATGACGACGGGAG
GTAGAACCATTGAGTCGGACGACGCTACTTCCACTGTTATTTTCTGCTTT
TCGACCGATGGCTGTTCGGCGTGGGGTGTGTGCGAACGGCCTTTTTCTTA
TCTTGACTTTATTACCCCTCCAGACCTCACTATCATTCCTTCCCTTCCTC
CCTACCCCCTCTCCCCTTTCCTGCATCTAACGAGGAAGCAAAAGGGCACA
ATGTACATCAAATGTGTACGTACTCCTCCTCCTAT
back to top

protein sequence of NO02G02810.1

>NO02G02810.1-protein ID=NO02G02810.1-protein|Name=NO02G02810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MEFVPGKPLGLRFCGDDDVAPLPLLCLTFSTFLFLIFLPHLAHSFSSSQG
KMVIKTDMCSFSEYRVYPGHGIRFVRRDSATLVFSTAKTKGLYNQRKKAA
RLVWTQGWRRLHKKIKVEEVQKRRSRRTTKFQRAIVGASLDEIKKKRAQK
PAERSAQREAALKEVKERAKALKAKQAKNKSAGGAAGGSKQASKTKTAVK
ARGTQR*
back to top

mRNA from alignment at chr2:761726..763642+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02810.1 ID=NO02G02810.1|Name=NO02G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1917bp|location=Sequence derived from alignment at chr2:761726..763642+ (Nannochloropsis oceanica)
GGGAGGCCTCTTGTCTCCTGCCCCTTACGCCATCTTCCCATGCGTAAGAA
GACTCTATGTGCAGGCATGAGAATGCAGAGGAGTATAGGGTGGGTATGGG
AATGCGTGTCTGACTTTGGTTGGTTTAACTTTATGCTTTCACGCAGCACC
ACTCACCCCTTCTTCCTCCCCTCCTCCCTCTCTTTTTCTTCTCTTCCCCT
AACATAGGTAAGGCACAAAGGCAACAATACTTGGACCGAGTGGTTGTCAT
CAGCTGCGTGACACACATTCGGAAAGAGAGATAGACGTCACTGTATTGGG
ATCGGGTGGAGGAGAGAGGGCTAGCAACTGCGGAGTGTCCGCGGTGTGCG
GCGGGAAGCATGCAGGGGGGAGAGCAGCGACGGGCAGCCCGTCATCATCC
ATTGAGCATTAACTCATTGAAGGGGCATGGAGGCACATTACACAATATTC
ATGAGGAATGGGCGTAGCATAGATTATTATGGAGTTTGTTCCTGGAAAGC
CCCTTGGCTTGCGGTTCTGTGGCGATGACGATGTGGCCCCCTTACCCCTT
CTATGTCTTACTTTTTCAACTTTCCTTTTCCTTATATTCCTTCCCCACCT
CGCTCACAGTTTTTCTTCTAGCCAGGGGAAAATGGTGATTAAGACAGACA
TGTGCAGCTTCTCGGAGTACCGGGTACGTAAAGGGTCGGGCAGTGGGCAG
GAGGAAGGGAAAGAGTAGGGGGTGCCTTCGATCTTGTCACGCCACGCCTA
TTCGTCCTTTTTGCTCGTTATCTGCTTTATAGTAGTGCGAATAGCAGAGC
ATATACTGTACTTCTCATCATCCTCCCTCCCGTCTCTTTGTAGGTGTACC
CCGGACATGGCATTCGATTCGTGCGCCGTGACAGTGCCACCCTCGTCTTC
TCCACCGCCAAGACCAAGGGCCTGTACAACCAACGCAAGAAGGCCGCCCG
CCTCGTTTGGACGCAAGGCTGGCGCCGACTGCACAAGAAGATCAAGGTGG
AGGAGGTGCAAAAGCGTCGTAGCCGAAGGACGACCAAGTTCCAGCGGGCG
ATCGTGGGGGCTTCCTTGGATGAGATCAAGAAGAAGCGTGCCCAGAAACC
GGCGGGTACGTTTTATCCTTGAAGCACGGTTATGGGAAAAGAAATAAAAG
GATGGAGAGGGAGCTGTCATGATCTTTGGGGTAGAGGAGGGAGCTGTCAT
GATGTTTCCGAATGATCATTATTTTGAATCTTGTATATGTGCCTTGTGCT
TACGTGTCTCGTAAAAACCAACCCCTTACCCCTCAATTCCCTCCATCGTA
TCACCCACCCACAACAGAGCGTAGCGCTCAGCGTGAGGCGGCCTTAAAAG
AGGTGAAGGAGCGCGCGAAGGCCCTCAAGGCGAAGCAGGCTAAGAACAAG
TCTGCCGGCGGCGCCGCCGGGGGCAGCAAGCAGGCCAGCAAGACCAAGAC
GGCGGTCAAGGCGCGTGGCACCCAGCGTTAAGAAACCTCTAGGAGGAATA
TGAGAGGAGTGATGAGAAAAGGGATGGGAGGAGGAAGGGTTGAAGCCGTG
AGGTGTCTTCATGGATTGTTTGAGAGGAGGAAACCCCAACCAGTTGGCTA
AGGAGTGACTATTCCAAGGGTGGCCAAAGGAAAGGGAAACCCTACAAGAA
GAACACTTGGAAGTCAGAAATGACGACGGGAGGTAGAACCATTGAGTCGG
ACGACGCTACTTCCACTGTTATTTTCTGCTTTTCGACCGATGGCTGTTCG
GCGTGGGGTGTGTGCGAACGGCCTTTTTCTTATCTTGACTTTATTACCCC
TCCAGACCTCACTATCATTCCTTCCCTTCCTCCCTACCCCCTCTCCCCTT
TCCTGCATCTAACGAGGAAGCAAAAGGGCACAATGTACATCAAATGTGTA
CGTACTCCTCCTCCTAT
back to top

Coding sequence (CDS) from alignment at chr2:761726..763642+

>NO02G02810.1 ID=NO02G02810.1|Name=NO02G02810.1|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at chr2:761726..763642+ (Nannochloropsis oceanica)
ATGGAGTTTGTTCCTGGAAAGCCCCTTGGCTTGCGGTTCTGTGGCGATGA
CGATGTGGCCCCCTTACCCCTTCTATGTCTTACTTTTTCAACTTTCCTTT
TCCTTATATTCCTTCCCCACCTCGCTCACAGTTTTTCTTCTAGCCAGGGG
AAAATGGTGATTAAGACAGACATGTGCAGCTTCTCGGAGTACCGGGTGTA
CCCCGGACATGGCATTCGATTCGTGCGCCGTGACAGTGCCACCCTCGTCT
TCTCCACCGCCAAGACCAAGGGCCTGTACAACCAACGCAAGAAGGCCGCC
CGCCTCGTTTGGACGCAAGGCTGGCGCCGACTGCACAAGAAGATCAAGGT
GGAGGAGGTGCAAAAGCGTCGTAGCCGAAGGACGACCAAGTTCCAGCGGG
CGATCGTGGGGGCTTCCTTGGATGAGATCAAGAAGAAGCGTGCCCAGAAA
CCGGCGGAGCGTAGCGCTCAGCGTGAGGCGGCCTTAAAAGAGGTGAAGGA
GCGCGCGAAGGCCCTCAAGGCGAAGCAGGCTAAGAACAAGTCTGCCGGCG
GCGCCGCCGGGGGCAGCAAGCAGGCCAGCAAGACCAAGACGGCGGTCAAG
GCGCGTGGCACCCAGCGTTAA
back to top
Synonyms
Publications