NO02G02720, NO02G02720 (gene) Nannochloropsis oceanica

Overview
NameNO02G02720
Unique NameNO02G02720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1549
Alignment locationchr2:745484..747032 +

Link to JBrowse

Properties
Property NameValue
DescriptionPH domain-containing rcdII
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:745484..747032 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019152DUF2046
Homology
The following BLAST results are available for this feature:
BLAST of NO02G02720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006917NSK006917Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02720.1NO02G02720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO02G02720.2NO02G02720.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574411gene_861Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100026g30gene275Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02720.1NO02G02720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO02G02720.2NO02G02720.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02720 ID=NO02G02720|Name=NO02G02720|organism=Nannochloropsis oceanica|type=gene|length=1549bp
CAACAGGGCAGCCAACAATAATGCATCAGCCGCCGCTTTCCCCCTCCTCA
CTGCCTTCAAGTCCCCGACCAGAGCATGACGCCAGCTATTGGAAACAAAG
GGCCGCGCAGCTGGAAAAAGAGGTAAGACGAACGAGGACATGTGGAGAAC
AGCACTTAGGACCTAGAATGGCCGCAGGCTGAATGGCCCTTTGTTAGCTT
TCCCCTCTGTTATCTCTCTCCCCTCCCTCCTTCCCGTCCCTCCCGTCCGT
CCCCCGTAGCTACTCGAAATGAAGGAGCGCTCGATAGAAATGTTCAGTCG
AACCGAAGCAGAGGAGGAAGGTCTCATCAATAAGCTCATCAGCCGCCTGG
ACGAACTCAAGAAGGAGAAGGAGCACTTGGCCATTGAGGTGGAGCGGGAG
GAGGAGgtacgttgaacatgtcctttttcgcatttgggactttcgaatct
tgccttgtaggaagtaattgcaggagccactttgccttgggcattcatcg
tcagaatccagcccttttcatgtccaattcctcctcccctacgcccacca
ccagATGATCTCCAACACCCTCCAAAAGAAGCTCACTAAAGTGCTACAAG
AAAAAATTGACCTTGAAAACCAGCTGGAAGCAGAGCAAGAAGCCATAGTC
AACAAACTCGGgtaagcctttgcttgaaattatctctccctctttttctt
gcttacatgtgtctctctcttctctcacatacaacaaaaccgactactca
gGGCTGAGATCTCGAAGCTACGCAAAGAAAAAGGAGCGTTGGTAATGGAA
GTAGAGCGGGAGGAAGAGCTGCTGACTACTACCTTGTCCCGCAAGCTGGA
TCGAGAACGTCGTGATAAAGAGGAGCTCGGGGCTCGCTTGCTTAAGGAAC
AGGTTCAGgtgcgtctcccgtatgatacgagagagcggatgaggacacaa
tgggggtcccaatctttccttactttccattcatctacaaaatgctttta
aattccacgcatgtacactagGTGCAAGAGTTGAAGGAGACTTTGAGAGA
AGATACCCGCCTCATTTTACAGCTCAAAGGCGTCATGGAGACAGTTACAG
ACAAAGGACAAGGACTGCCTCTCGAGCCTGAAGACCGTGATCTTATCATA
CAGgtaagggtatgcgcgcgcttcggacagagggaaacacatggaaatgg
taatgtaatctttgttattgtcatcgctcatttcctattcccatggatca
ccgttctttacataaaaaccatgcagATCTCTGCTCGGCTTGCGGAGCGT
TTGATCCTGCTTGAGAGCAGAGCGGGAGGGCAAGACGAGGAAGGGTGGAG
AGAGGAGGAAGAGAAGGACGGGAAGGTGGAGGAGGAAGTGGGGGACGAGT
TGGAAAGTGTGAGTAGCACTGGTGCCGCGGCGGGAGGGAGCAGCAGCCAG
GATAGCACGATGGGAAGTGACGAATGAGTTGGGAGGAGTGAGGTGTAAAA
AGAGAAAATGATAATGGAAAAGAAAAAGAAAAATAGAAACATATTGTTA
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protein sequence of NO02G02720.1

>NO02G02720.1-protein ID=NO02G02720.1-protein|Name=NO02G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MHQPPLSPSSLPSSPRPEHDASYWKQRAAQLEKELLEMKERSIEMFSRTE
AEEEGLINKLISRLDELKKEKEHLAIEVEREEEMISNTLQKKLTKVLQEK
IDLENQLEAEQEAIVNKLGAEISKLRKEKGALVMEVEREEELLTTTLSRK
LDRERRDKEELGARLLKEQVQVQELKETLREDTRLILQLKGVMETVTDKG
QGLPLEPEDRDLIIQISARLAERLILLESRAGGQDEEGWREEEEKDGKVE
EEVGDELESVSSTGAAAGGSSSQDSTMGSDE*
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protein sequence of NO02G02720.2

>NO02G02720.2-protein ID=NO02G02720.2-protein|Name=NO02G02720.2|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MKERSIEMFSRTEAEEEGLINKLISRLDELKKEKEHLAIEVEREEEMISN
TLQKKLTKVLQEKIDLENQLEAEQEAIVNKLGAEISKLRKEKGALVMEVE
REEELLTTTLSRKLDRERRDKEELGARLLKEQVQVQELKETLREDTRLIL
QLKGVMETVTDKGQGLPLEPEDRDLIIQISARLAERLILLESRAGGQDEE
GWREEEEKDGKVEEEVGDELESVSSTGAAAGGSSSQDSTMGSDE*
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Synonyms
Publications