NO02G02720.2, NO02G02720.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02720.2
Unique NameNO02G02720.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1075
Alignment locationchr2:745484..747032 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:745484..747032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02720.2 vs.
Match: EWM30403.1 (Protein of unknown function DUF2046 [Nannochloropsis gaditana])

HSP 1 Score: 234.2 bits (596), Expect = 4.400e-58
Identity = 151/245 (61.63%), Postives = 184/245 (75.10%), Query Frame = 0 
Query:    1 MKERSIEMFSRTEAEEEGLINKLISRLDELKKEKEHLAIEVEREEEMISNTLQKKLTKVLQEKIDLENQLEAEQEAIVNKLGAEISKLRKEKGALVMEVEREEELLTTTLSRKLDRERRDKEELGARLLKEQVQVQELKETLREDTRLILQLKGVMETVTDKGQGLPLEPEDRDLIIQISARLAERLILLESRAGGQDEEGWREEEEKDGKVEEEVGDELESVSSTGAAAGGSSSQDSTM--GSD 244
            +KERSI+MF RTEAEEEG+INKLI+RL+ELKKEKEHLA+EVEREEEMISNTLQKKLTK+ QEK+D ENQLEAEQEAIVNKLGAEISKLRKEK  L+ E+EREEE LT  LSRKL RER +KE L ARLL E+ QV E +  L+ED  LI QLK  +E + D+G    L+ +DR+ I+Q+S RL  RL ++ES    ++E    +EE K+G          +S+SS GA AGG SS+ S++  GSD
Sbjct:   34 LKERSIKMFCRTEAEEEGIINKLINRLEELKKEKEHLAVEVEREEEMISNTLQKKLTKLQQEKVDQENQLEAEQEAIVNKLGAEISKLRKEKETLMTEIEREEEHLTNNLSRKLTRERAEKEALEARLLSERKQVLESRALLKEDACLITQLKAAVEPLKDEG---ALKLKDRESILQVSERLINRLSVIESATSDKEE----DEESKEG---------TDSISSIGATAGGGSSRGSSIAGGSD 262
The following BLAST results are available for this feature:
BLAST of NO02G02720.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30403.14.400e-5861.63Protein of unknown function DUF2046 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02720NO02G02720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02720.2NO02G02720.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02720.2.cds1NO02G02720.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02720.2.cds2NO02G02720.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02720.2.cds3NO02G02720.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02720.2.cds4NO02G02720.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02720.2.cds5NO02G02720.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02720.2 ID=NO02G02720.2|Name=NO02G02720.2|organism=Nannochloropsis oceanica|type=mRNA|length=1075bp
CAACAGGGCAGCCAACAATAATGCATCAGCCGCCGCTTTCCCCCTCCTCA
CTGCCTTCAAGTCCCCGACCAGAGCATGACGCCAGCTATTGGAAACAAAG
GGCCGCGCAGCTGGAAAAAGAGGTAAGACGAACGAGGACATGTGGAGAAC
AGCACTTAGGACCTAGAATGGCCGCAGGCTGAATGGCCCTTTGTTAGCTT
TCCCCTCTGTTATCTCTCTCCCCTCCCTCCTTCCCGTCCCTCCCGTCCGT
CCCCCGTAGCTACTCGAAATGAAGGAGCGCTCGATAGAAATGTTCAGTCG
AACCGAAGCAGAGGAGGAAGGTCTCATCAATAAGCTCATCAGCCGCCTGG
ACGAACTCAAGAAGGAGAAGGAGCACTTGGCCATTGAGGTGGAGCGGGAG
GAGGAGATGATCTCCAACACCCTCCAAAAGAAGCTCACTAAAGTGCTACA
AGAAAAAATTGACCTTGAAAACCAGCTGGAAGCAGAGCAAGAAGCCATAG
TCAACAAACTCGGGGCTGAGATCTCGAAGCTACGCAAAGAAAAAGGAGCG
TTGGTAATGGAAGTAGAGCGGGAGGAAGAGCTGCTGACTACTACCTTGTC
CCGCAAGCTGGATCGAGAACGTCGTGATAAAGAGGAGCTCGGGGCTCGCT
TGCTTAAGGAACAGGTTCAGGTGCAAGAGTTGAAGGAGACTTTGAGAGAA
GATACCCGCCTCATTTTACAGCTCAAAGGCGTCATGGAGACAGTTACAGA
CAAAGGACAAGGACTGCCTCTCGAGCCTGAAGACCGTGATCTTATCATAC
AGATCTCTGCTCGGCTTGCGGAGCGTTTGATCCTGCTTGAGAGCAGAGCG
GGAGGGCAAGACGAGGAAGGGTGGAGAGAGGAGGAAGAGAAGGACGGGAA
GGTGGAGGAGGAAGTGGGGGACGAGTTGGAAAGTGTGAGTAGCACTGGTG
CCGCGGCGGGAGGGAGCAGCAGCCAGGATAGCACGATGGGAAGTGACGAA
TGAGTTGGGAGGAGTGAGGTGTAAAAAGAGAAAATGATAATGGAAAAGAA
AAAGAAAAATAGAAACATATTGTTA
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protein sequence of NO02G02720.2

>NO02G02720.2-protein ID=NO02G02720.2-protein|Name=NO02G02720.2|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MKERSIEMFSRTEAEEEGLINKLISRLDELKKEKEHLAIEVEREEEMISN
TLQKKLTKVLQEKIDLENQLEAEQEAIVNKLGAEISKLRKEKGALVMEVE
REEELLTTTLSRKLDRERRDKEELGARLLKEQVQVQELKETLREDTRLIL
QLKGVMETVTDKGQGLPLEPEDRDLIIQISARLAERLILLESRAGGQDEE
GWREEEEKDGKVEEEVGDELESVSSTGAAAGGSSSQDSTMGSDE*
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mRNA from alignment at chr2:745484..747032+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02720.2 ID=NO02G02720.2|Name=NO02G02720.2|organism=Nannochloropsis oceanica|type=mRNA|length=1549bp|location=Sequence derived from alignment at chr2:745484..747032+ (Nannochloropsis oceanica)
CAACAGGGCAGCCAACAATAATGCATCAGCCGCCGCTTTCCCCCTCCTCA
CTGCCTTCAAGTCCCCGACCAGAGCATGACGCCAGCTATTGGAAACAAAG
GGCCGCGCAGCTGGAAAAAGAGGTAAGACGAACGAGGACATGTGGAGAAC
AGCACTTAGGACCTAGAATGGCCGCAGGCTGAATGGCCCTTTGTTAGCTT
TCCCCTCTGTTATCTCTCTCCCCTCCCTCCTTCCCGTCCCTCCCGTCCGT
CCCCCGTAGCTACTCGAAATGAAGGAGCGCTCGATAGAAATGTTCAGTCG
AACCGAAGCAGAGGAGGAAGGTCTCATCAATAAGCTCATCAGCCGCCTGG
ACGAACTCAAGAAGGAGAAGGAGCACTTGGCCATTGAGGTGGAGCGGGAG
GAGGAGGTACGTTGAACATGTCCTTTTTCGCATTTGGGACTTTCGAATCT
TGCCTTGTAGGAAGTAATTGCAGGAGCCACTTTGCCTTGGGCATTCATCG
TCAGAATCCAGCCCTTTTCATGTCCAATTCCTCCTCCCCTACGCCCACCA
CCAGATGATCTCCAACACCCTCCAAAAGAAGCTCACTAAAGTGCTACAAG
AAAAAATTGACCTTGAAAACCAGCTGGAAGCAGAGCAAGAAGCCATAGTC
AACAAACTCGGGTAAGCCTTTGCTTGAAATTATCTCTCCCTCTTTTTCTT
GCTTACATGTGTCTCTCTCTTCTCTCACATACAACAAAACCGACTACTCA
GGGCTGAGATCTCGAAGCTACGCAAAGAAAAAGGAGCGTTGGTAATGGAA
GTAGAGCGGGAGGAAGAGCTGCTGACTACTACCTTGTCCCGCAAGCTGGA
TCGAGAACGTCGTGATAAAGAGGAGCTCGGGGCTCGCTTGCTTAAGGAAC
AGGTTCAGGTGCGTCTCCCGTATGATACGAGAGAGCGGATGAGGACACAA
TGGGGGTCCCAATCTTTCCTTACTTTCCATTCATCTACAAAATGCTTTTA
AATTCCACGCATGTACACTAGGTGCAAGAGTTGAAGGAGACTTTGAGAGA
AGATACCCGCCTCATTTTACAGCTCAAAGGCGTCATGGAGACAGTTACAG
ACAAAGGACAAGGACTGCCTCTCGAGCCTGAAGACCGTGATCTTATCATA
CAGGTAAGGGTATGCGCGCGCTTCGGACAGAGGGAAACACATGGAAATGG
TAATGTAATCTTTGTTATTGTCATCGCTCATTTCCTATTCCCATGGATCA
CCGTTCTTTACATAAAAACCATGCAGATCTCTGCTCGGCTTGCGGAGCGT
TTGATCCTGCTTGAGAGCAGAGCGGGAGGGCAAGACGAGGAAGGGTGGAG
AGAGGAGGAAGAGAAGGACGGGAAGGTGGAGGAGGAAGTGGGGGACGAGT
TGGAAAGTGTGAGTAGCACTGGTGCCGCGGCGGGAGGGAGCAGCAGCCAG
GATAGCACGATGGGAAGTGACGAATGAGTTGGGAGGAGTGAGGTGTAAAA
AGAGAAAATGATAATGGAAAAGAAAAAGAAAAATAGAAACATATTGTTA
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Coding sequence (CDS) from alignment at chr2:745484..747032+

>NO02G02720.2 ID=NO02G02720.2|Name=NO02G02720.2|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at chr2:745484..747032+ (Nannochloropsis oceanica)
ATGAAGGAGCGCTCGATAGAAATGTTCAGTCGAACCGAAGCAGAGGAGGA
AGGTCTCATCAATAAGCTCATCAGCCGCCTGGACGAACTCAAGAAGGAGA
AGGAGCACTTGGCCATTGAGGTGGAGCGGGAGGAGGAGATGATCTCCAAC
ACCCTCCAAAAGAAGCTCACTAAAGTGCTACAAGAAAAAATTGACCTTGA
AAACCAGCTGGAAGCAGAGCAAGAAGCCATAGTCAACAAACTCGGGGCTG
AGATCTCGAAGCTACGCAAAGAAAAAGGAGCGTTGGTAATGGAAGTAGAG
CGGGAGGAAGAGCTGCTGACTACTACCTTGTCCCGCAAGCTGGATCGAGA
ACGTCGTGATAAAGAGGAGCTCGGGGCTCGCTTGCTTAAGGAACAGGTTC
AGGTGCAAGAGTTGAAGGAGACTTTGAGAGAAGATACCCGCCTCATTTTA
CAGCTCAAAGGCGTCATGGAGACAGTTACAGACAAAGGACAAGGACTGCC
TCTCGAGCCTGAAGACCGTGATCTTATCATACAGATCTCTGCTCGGCTTG
CGGAGCGTTTGATCCTGCTTGAGAGCAGAGCGGGAGGGCAAGACGAGGAA
GGGTGGAGAGAGGAGGAAGAGAAGGACGGGAAGGTGGAGGAGGAAGTGGG
GGACGAGTTGGAAAGTGTGAGTAGCACTGGTGCCGCGGCGGGAGGGAGCA
GCAGCCAGGATAGCACGATGGGAAGTGACGAATGA
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Synonyms
Publications