NO02G02700, NO02G02700 (gene) Nannochloropsis oceanica

Overview
NameNO02G02700
Unique NameNO02G02700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2421
Alignment locationchr2:740782..743202 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:740782..743202 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
GO:0005737cytoplasm
GO:0005852eukaryotic translation initiation factor 3 complex
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0003743translation initiation factor activity
Vocabulary: INTERPRO
TermDefinition
IPR013906eIF3j
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Homology
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BLAST of NO02G02700 vs. NCBI_GenBank
Match: XP_005853557.1 (hypothetical protein NGA_0307202 [Nannochloropsis gaditana CCMP526] >EKU22806.1 hypothetical protein NGA_0307202 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 224.2 bits (570), Expect = 5.000e-55
Identity = 172/273 (63.00%), Postives = 188/273 (68.86%), Query Frame = 0 
Query:    1 MGDSWEDDDFTPVLPQAVILPTKAAWEDEDLPDDPNFGKTPEQIATEAAQKRKAEELRQAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVERSDHAMADELFGGPGLDGEQQPGSRPASSLSLSSTISSSALGGSKKAGAVSFASLNSPGDFTLLAKDLAPKFKKAASSKDVTSFVSELLARGAKDPVGVEDLNELIKNLQSLAVEKQRQADANRNKIGQKQKALAAKKREHKATAAKHKELFGDDFDGADPDMDQYYDMEDEFM 274
            MGDSWEDDDFTPV+PQAV+LPTK +W+DEDLP+DPN GKTPE+IA EA +            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+AVE++D+AMADELFG PG     QP SRP SSLSLSS+ SS   G +  A  V    L +PGDFT LAK L P+FKKAASSKDVT FV ELLARG KDPVGVEDLNELIK LQ+LAVE                                    FG DFD  DPDMDQYY MEDEFM
Sbjct:    1 MGDSWEDDDFTPVVPQAVVLPTKTSWDDEDLPEDPNAGKTPEEIAAEAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAVEKADYAMADELFGPPG-----QPSSRPLSSLSLSSSASSVGAGKAPNAPTV----LKAPGDFTALAKSLGPQFKKAASSKDVTGFVLELLARGGKDPVGVEDLNELIKGLQALAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGADFDEDDPDMDQYYAMEDEFM 264
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BLAST of NO02G02700 vs. NCBI_GenBank
Match: EWM30368.1 (Translation initiation factor eIF3 subunit [Nannochloropsis gaditana])

HSP 1 Score: 119.0 bits (297), Expect = 2.300e-23
Identity = 101/141 (71.63%), Postives = 113/141 (80.14%), Query Frame = 0 
Query:    1 MGDSWEDDDFTPVLPQAVILPTKAAWEDEDLPDDPNFGKTPEQIATEAAQKRKAEELRQAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVERSDHAMADELFGGPGLDGEQQPGSRPASSLSLSSTISSSALG 142
            MGDSWEDDDFTPV+PQAV+LPTK +W+DEDLP+DPN GKTPE+IA EA +            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+AVE++D+AMADELFG PG     QP SRP SSLSLSS+ SS   G
Sbjct:    1 MGDSWEDDDFTPVVPQAVVLPTKTSWDDEDLPEDPNAGKTPEEIAAEAERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAVEKADYAMADELFGPPG-----QPSSRPLSSLSLSSSASSVGAG 136
The following BLAST results are available for this feature:
BLAST of NO02G02700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853557.15.000e-5563.00hypothetical protein NGA_0307202 [Nannochloropsis ... [more]
EWM30368.12.300e-2371.63Translation initiation factor eIF3 subunit [Nannoc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006915NSK006915Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02700.1NO02G02700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574401gene_859Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100026g32gene273Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02700.1NO02G02700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02700 ID=NO02G02700|Name=NO02G02700|organism=Nannochloropsis oceanica|type=gene|length=2421bp
ATGCCGCGCGGCTTTGTTTTTCACCCGGAGTGGTTTGGTTCTTCATGTTC
TTCAGCGCGATACCCGGATGTCAGAAAGCCCGCGAGCCCCACACCTTTTT
TGCCTGCCTCACCATCTCACCATGACCTCCACGACAACCGAACCCTTTCC
AGCAATTTATCACGACAAGCGCAAAGTACACATGCGCCTTTAGTGCGGCG
GCGCGCCAGAGAGCACCTTTCACGCGGGCCGTGAGACAGCCCCAAACCTT
GAACCTCTCCATCATCCACACACGTTTTCTCACGCGCCTCCCTCCCATCT
CTGCACAACCGCAGACCAACTGTAAGCCATGGGAGACTCGTGGGAAGACG
ATGACTTTACGCCAGTTCTGCCACAGGCGGTGATCTTGCCTACCAAGGCG
GCTTGGGAAGACGAGGACTTGgtaggtggcgatctgtgtgtggtgccctt
ttctcaagcctgtcttcggctttgtgtgcctcgaacgtgccctcgaagat
tgaataatctcggagtaaggagtataaagttgtgcctacaactcatgagc
atgtgtgtcacgtaaagtttgtgaattgatttgagcgccctttgtgataa
taacaccccatctgcgttcccccctaacgcgtcaatttgggatgtatttc
ctgctgtctgagtgcttacccctcgtgcgtattttttcgtccgtcgtcat
ggagactggaatgcattctttttttttacctcgtgacctttcttgccaaa
cacttatcccactccttccgcccttccctgaccccacacgcttatagCCC
GACGACCCGAATTTCGGCAAGACTCCCGAGCAAATCGCCACCGAAGCCGC
GCAAAAGAGAAAAGCAGAGGAACTCCGTCAGGCTAAGGCCGCAAAAGATG
CAGAGCGTGCCACTCTCCGACGAGCAGCAGAAGAAGAAGCGGCGTTAATG
GCCAAGGAGACCCCAGAGGAACGGGCCTTACGGGAGCGGAAGGCTGTGGA
GAGGTCGGACCACGCGATGGCGGATGAGTTGTTTGGGGGGCCAGGGCTAG
ACGGGGAGCAGCAACCAGGCAGTAGGCCGGCTTCCTCTCTTAGTTTGTCG
TCTACAATTTCTTCGTCGGCTTTGGGAGGGAGCAAGgtatgtcagagaga
gtagagggggactcctcactgggttaaagtaaattgtgggaatttaccag
catttgagtttgaatttgaagttccatgccattctcgcgtcctccatcca
ccaccgtatgatcaatccttttcttccactttccctccctcccctccacc
gagcagAAGGCGGGCGCCGTATCCTTCGCGAGCCTCAATTCCCCGGGAGA
TTTCACGCTCCTTGCCAAGGACCTGGCCCCTAAATTCAAAAAGGCCGCCA
GCAGCAAGGACGTCACCAGCTTTGTCTCAGAGCTGCTCGCCAGGGGAGCT
AAGGACCCCGTGGGCGTGGAAGACCTTAACGAGTTGATCAAAAATCTGCA
GTCCCTGGCCGTGGAGAAACAGAGGCAGGCCGACGCGAACCGGAACAAGA
TCGGGCAGAAGCAGAAGGCGCTGGCGGCGAAGAAGAGGGAGCATAAGGCG
ACAGCCGCCAAGCACAAGGAGCTGTTTGGGGATGATTTTGATGGGGCGGA
TCCGGATATGGACCAGTACTATGATATGGAGGATgtgagtagaaagggag
ggaggaagggagggagagtgggagggaagggtcgccgcgcagggacagtg
ctatacttgtgatgtgtgctttcgcactcagcctttttattcacgcctag
atccctcttttcttctcttcttatttcccgctctcgggcgcacccacagG
AGTTCATGTGAAGCCCCGGGAGCCAAGCAAACAAGGCGAGCCGTCACACT
CAGCTTGGGGACGACGGATTACCACTACCACCACCACCAGCAGCATCATT
ATCCAGTCACAAGGGGAGACAATTGTGAGGGTCAGAGGCAGAGACGTTCA
CGAGCGAAGAAAGCGCGCGAGGCCCACGATGGTGTGTCAACGTGCAAGGA
ATATAGGGATGGAGGGAGGGTGGGAGGAAGGAAGGGAGGAATTTTGTATT
TTGTCGATGGAGATGGCTCGATGGTTGGATGGATGAATGTTGCTGCGCTG
GCTGGTTGGCGCGAGAGGAAGGAGAGCGCGAGGAGGAGGACGAATGCTGA
GAAACACGACTCGGATCAATTTAAATATCCGTTTTTAGGCCCTTGCCTGT
CCGGAGGAGGAGGGGGAGGGGGAGGAGGTGGTGGAGGAAGAGGCAGAGGA
GATGCTTGAAGATTCATAGAGTGCACGTAGTGAAAAGGTGTGGGAAAACA
AGAGATATAGGAAACCCAGGAGGAAAGAAGCAACACACACACACACACAC
ACACTCTCTCTCTCTCTCTCT
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protein sequence of NO02G02700.1

>NO02G02700.1-protein ID=NO02G02700.1-protein|Name=NO02G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MGDSWEDDDFTPVLPQAVILPTKAAWEDEDLPDDPNFGKTPEQIATEAAQ
KRKAEELRQAKAAKDAERATLRRAAEEEAALMAKETPEERALRERKAVER
SDHAMADELFGGPGLDGEQQPGSRPASSLSLSSTISSSALGGSKKAGAVS
FASLNSPGDFTLLAKDLAPKFKKAASSKDVTSFVSELLARGAKDPVGVED
LNELIKNLQSLAVEKQRQADANRNKIGQKQKALAAKKREHKATAAKHKEL
FGDDFDGADPDMDQYYDMEDEFM*
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Synonyms
Publications