NO02G02700.1, NO02G02700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02700.1
Unique NameNO02G02700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1710
Alignment locationchr2:740782..743202 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:740782..743202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02700.1 vs.
Match: XP_005853557.1 (hypothetical protein NGA_0307202 [Nannochloropsis gaditana CCMP526]; EKU22806.1 hypothetical protein NGA_0307202 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 365.2 bits (936), Expect = 1.800e-97
Identity = 204/273 (74.73%), Postives = 227/273 (83.15%), Query Frame = 0 
Query:    1 MGDSWEDDDFTPVLPQAVILPTKAAWEDEDLPDDPNFGKTPEQIATEAAQKRKAEELRQAKAAKDAERATLRRAAEEEAALMAKETPEERALRERKAVERSDHAMADELFGGPGLDGEQQPGSRPASSLSLSSTISSSALGGSKKAGAVSFASLNSPGDFTLLAKDLAPKFKKAASSKDVTSFVSELLARGAKDPVGVEDLNELIKNLQSLAVEKQRQADANRNKIGQKQKALAAKKREHKATAAKHKELFGDDFDGADPDMDQYYDMEDEFM 274
            MGDSWEDDDFTPV+PQAV+LPTK +W+DEDLP+DPN GKTPE+IA EA ++RKAEE RQA+A K+AERA LRR AEEEA  MAKETPEERALRER+AVE++D+AMADELFG PG     QP SRP SSLSLSS+ SS   G +  A  V    L +PGDFT LAK L P+FKKAASSKDVT FV ELLARG KDPVGVEDLNELIK LQ+LAVEKQR ADANRNKIG KQKALAAKK+EHKA +A+HKE+FG DFD  DPDMDQYY MEDEFM
Sbjct:    1 MGDSWEDDDFTPVVPQAVVLPTKTSWDDEDLPEDPNAGKTPEEIAAEAERRRKAEEARQARARKNAERAELRRQAEEEAERMAKETPEERALRERQAVEKADYAMADELFGPPG-----QPSSRPLSSLSLSSSASSVGAGKAPNAPTV----LKAPGDFTALAKSLGPQFKKAASSKDVTGFVLELLARGGKDPVGVEDLNELIKGLQALAVEKQRLADANRNKIGAKQKALAAKKKEHKAKSAQHKEVFGADFDEDDPDMDQYYAMEDEFM 264
The following BLAST results are available for this feature:
BLAST of NO02G02700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853557.11.800e-9774.73hypothetical protein NGA_0307202 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02700NO02G02700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02700.1NO02G02700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02700.1.cds1NO02G02700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02700.1.cds2NO02G02700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02700.1.cds3NO02G02700.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02700.1.cds4NO02G02700.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02700.1 ID=NO02G02700.1|Name=NO02G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1710bp
ATGCCGCGCGGCTTTGTTTTTCACCCGGAGTGGTTTGGTTCTTCATGTTC
TTCAGCGCGATACCCGGATGTCAGAAAGCCCGCGAGCCCCACACCTTTTT
TGCCTGCCTCACCATCTCACCATGACCTCCACGACAACCGAACCCTTTCC
AGCAATTTATCACGACAAGCGCAAAGTACACATGCGCCTTTAGTGCGGCG
GCGCGCCAGAGAGCACCTTTCACGCGGGCCGTGAGACAGCCCCAAACCTT
GAACCTCTCCATCATCCACACACGTTTTCTCACGCGCCTCCCTCCCATCT
CTGCACAACCGCAGACCAACTGTAAGCCATGGGAGACTCGTGGGAAGACG
ATGACTTTACGCCAGTTCTGCCACAGGCGGTGATCTTGCCTACCAAGGCG
GCTTGGGAAGACGAGGACTTGCCCGACGACCCGAATTTCGGCAAGACTCC
CGAGCAAATCGCCACCGAAGCCGCGCAAAAGAGAAAAGCAGAGGAACTCC
GTCAGGCTAAGGCCGCAAAAGATGCAGAGCGTGCCACTCTCCGACGAGCA
GCAGAAGAAGAAGCGGCGTTAATGGCCAAGGAGACCCCAGAGGAACGGGC
CTTACGGGAGCGGAAGGCTGTGGAGAGGTCGGACCACGCGATGGCGGATG
AGTTGTTTGGGGGGCCAGGGCTAGACGGGGAGCAGCAACCAGGCAGTAGG
CCGGCTTCCTCTCTTAGTTTGTCGTCTACAATTTCTTCGTCGGCTTTGGG
AGGGAGCAAGAAGGCGGGCGCCGTATCCTTCGCGAGCCTCAATTCCCCGG
GAGATTTCACGCTCCTTGCCAAGGACCTGGCCCCTAAATTCAAAAAGGCC
GCCAGCAGCAAGGACGTCACCAGCTTTGTCTCAGAGCTGCTCGCCAGGGG
AGCTAAGGACCCCGTGGGCGTGGAAGACCTTAACGAGTTGATCAAAAATC
TGCAGTCCCTGGCCGTGGAGAAACAGAGGCAGGCCGACGCGAACCGGAAC
AAGATCGGGCAGAAGCAGAAGGCGCTGGCGGCGAAGAAGAGGGAGCATAA
GGCGACAGCCGCCAAGCACAAGGAGCTGTTTGGGGATGATTTTGATGGGG
CGGATCCGGATATGGACCAGTACTATGATATGGAGGATGAGTTCATGTGA
AGCCCCGGGAGCCAAGCAAACAAGGCGAGCCGTCACACTCAGCTTGGGGA
CGACGGATTACCACTACCACCACCACCAGCAGCATCATTATCCAGTCACA
AGGGGAGACAATTGTGAGGGTCAGAGGCAGAGACGTTCACGAGCGAAGAA
AGCGCGCGAGGCCCACGATGGTGTGTCAACGTGCAAGGAATATAGGGATG
GAGGGAGGGTGGGAGGAAGGAAGGGAGGAATTTTGTATTTTGTCGATGGA
GATGGCTCGATGGTTGGATGGATGAATGTTGCTGCGCTGGCTGGTTGGCG
CGAGAGGAAGGAGAGCGCGAGGAGGAGGACGAATGCTGAGAAACACGACT
CGGATCAATTTAAATATCCGTTTTTAGGCCCTTGCCTGTCCGGAGGAGGA
GGGGGAGGGGGAGGAGGTGGTGGAGGAAGAGGCAGAGGAGATGCTTGAAG
ATTCATAGAGTGCACGTAGTGAAAAGGTGTGGGAAAACAAGAGATATAGG
AAACCCAGGAGGAAAGAAGCAACACACACACACACACACACACTCTCTCT
CTCTCTCTCT
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protein sequence of NO02G02700.1

>NO02G02700.1-protein ID=NO02G02700.1-protein|Name=NO02G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MGDSWEDDDFTPVLPQAVILPTKAAWEDEDLPDDPNFGKTPEQIATEAAQ
KRKAEELRQAKAAKDAERATLRRAAEEEAALMAKETPEERALRERKAVER
SDHAMADELFGGPGLDGEQQPGSRPASSLSLSSTISSSALGGSKKAGAVS
FASLNSPGDFTLLAKDLAPKFKKAASSKDVTSFVSELLARGAKDPVGVED
LNELIKNLQSLAVEKQRQADANRNKIGQKQKALAAKKREHKATAAKHKEL
FGDDFDGADPDMDQYYDMEDEFM*
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mRNA from alignment at chr2:740782..743202+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02700.1 ID=NO02G02700.1|Name=NO02G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2421bp|location=Sequence derived from alignment at chr2:740782..743202+ (Nannochloropsis oceanica)
ATGCCGCGCGGCTTTGTTTTTCACCCGGAGTGGTTTGGTTCTTCATGTTC
TTCAGCGCGATACCCGGATGTCAGAAAGCCCGCGAGCCCCACACCTTTTT
TGCCTGCCTCACCATCTCACCATGACCTCCACGACAACCGAACCCTTTCC
AGCAATTTATCACGACAAGCGCAAAGTACACATGCGCCTTTAGTGCGGCG
GCGCGCCAGAGAGCACCTTTCACGCGGGCCGTGAGACAGCCCCAAACCTT
GAACCTCTCCATCATCCACACACGTTTTCTCACGCGCCTCCCTCCCATCT
CTGCACAACCGCAGACCAACTGTAAGCCATGGGAGACTCGTGGGAAGACG
ATGACTTTACGCCAGTTCTGCCACAGGCGGTGATCTTGCCTACCAAGGCG
GCTTGGGAAGACGAGGACTTGGTAGGTGGCGATCTGTGTGTGGTGCCCTT
TTCTCAAGCCTGTCTTCGGCTTTGTGTGCCTCGAACGTGCCCTCGAAGAT
TGAATAATCTCGGAGTAAGGAGTATAAAGTTGTGCCTACAACTCATGAGC
ATGTGTGTCACGTAAAGTTTGTGAATTGATTTGAGCGCCCTTTGTGATAA
TAACACCCCATCTGCGTTCCCCCCTAACGCGTCAATTTGGGATGTATTTC
CTGCTGTCTGAGTGCTTACCCCTCGTGCGTATTTTTTCGTCCGTCGTCAT
GGAGACTGGAATGCATTCTTTTTTTTTACCTCGTGACCTTTCTTGCCAAA
CACTTATCCCACTCCTTCCGCCCTTCCCTGACCCCACACGCTTATAGCCC
GACGACCCGAATTTCGGCAAGACTCCCGAGCAAATCGCCACCGAAGCCGC
GCAAAAGAGAAAAGCAGAGGAACTCCGTCAGGCTAAGGCCGCAAAAGATG
CAGAGCGTGCCACTCTCCGACGAGCAGCAGAAGAAGAAGCGGCGTTAATG
GCCAAGGAGACCCCAGAGGAACGGGCCTTACGGGAGCGGAAGGCTGTGGA
GAGGTCGGACCACGCGATGGCGGATGAGTTGTTTGGGGGGCCAGGGCTAG
ACGGGGAGCAGCAACCAGGCAGTAGGCCGGCTTCCTCTCTTAGTTTGTCG
TCTACAATTTCTTCGTCGGCTTTGGGAGGGAGCAAGGTATGTCAGAGAGA
GTAGAGGGGGACTCCTCACTGGGTTAAAGTAAATTGTGGGAATTTACCAG
CATTTGAGTTTGAATTTGAAGTTCCATGCCATTCTCGCGTCCTCCATCCA
CCACCGTATGATCAATCCTTTTCTTCCACTTTCCCTCCCTCCCCTCCACC
GAGCAGAAGGCGGGCGCCGTATCCTTCGCGAGCCTCAATTCCCCGGGAGA
TTTCACGCTCCTTGCCAAGGACCTGGCCCCTAAATTCAAAAAGGCCGCCA
GCAGCAAGGACGTCACCAGCTTTGTCTCAGAGCTGCTCGCCAGGGGAGCT
AAGGACCCCGTGGGCGTGGAAGACCTTAACGAGTTGATCAAAAATCTGCA
GTCCCTGGCCGTGGAGAAACAGAGGCAGGCCGACGCGAACCGGAACAAGA
TCGGGCAGAAGCAGAAGGCGCTGGCGGCGAAGAAGAGGGAGCATAAGGCG
ACAGCCGCCAAGCACAAGGAGCTGTTTGGGGATGATTTTGATGGGGCGGA
TCCGGATATGGACCAGTACTATGATATGGAGGATGTGAGTAGAAAGGGAG
GGAGGAAGGGAGGGAGAGTGGGAGGGAAGGGTCGCCGCGCAGGGACAGTG
CTATACTTGTGATGTGTGCTTTCGCACTCAGCCTTTTTATTCACGCCTAG
ATCCCTCTTTTCTTCTCTTCTTATTTCCCGCTCTCGGGCGCACCCACAGG
AGTTCATGTGAAGCCCCGGGAGCCAAGCAAACAAGGCGAGCCGTCACACT
CAGCTTGGGGACGACGGATTACCACTACCACCACCACCAGCAGCATCATT
ATCCAGTCACAAGGGGAGACAATTGTGAGGGTCAGAGGCAGAGACGTTCA
CGAGCGAAGAAAGCGCGCGAGGCCCACGATGGTGTGTCAACGTGCAAGGA
ATATAGGGATGGAGGGAGGGTGGGAGGAAGGAAGGGAGGAATTTTGTATT
TTGTCGATGGAGATGGCTCGATGGTTGGATGGATGAATGTTGCTGCGCTG
GCTGGTTGGCGCGAGAGGAAGGAGAGCGCGAGGAGGAGGACGAATGCTGA
GAAACACGACTCGGATCAATTTAAATATCCGTTTTTAGGCCCTTGCCTGT
CCGGAGGAGGAGGGGGAGGGGGAGGAGGTGGTGGAGGAAGAGGCAGAGGA
GATGCTTGAAGATTCATAGAGTGCACGTAGTGAAAAGGTGTGGGAAAACA
AGAGATATAGGAAACCCAGGAGGAAAGAAGCAACACACACACACACACAC
ACACTCTCTCTCTCTCTCTCT
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Coding sequence (CDS) from alignment at chr2:740782..743202+

>NO02G02700.1 ID=NO02G02700.1|Name=NO02G02700.1|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at chr2:740782..743202+ (Nannochloropsis oceanica)
ATGGGAGACTCGTGGGAAGACGATGACTTTACGCCAGTTCTGCCACAGGC
GGTGATCTTGCCTACCAAGGCGGCTTGGGAAGACGAGGACTTGCCCGACG
ACCCGAATTTCGGCAAGACTCCCGAGCAAATCGCCACCGAAGCCGCGCAA
AAGAGAAAAGCAGAGGAACTCCGTCAGGCTAAGGCCGCAAAAGATGCAGA
GCGTGCCACTCTCCGACGAGCAGCAGAAGAAGAAGCGGCGTTAATGGCCA
AGGAGACCCCAGAGGAACGGGCCTTACGGGAGCGGAAGGCTGTGGAGAGG
TCGGACCACGCGATGGCGGATGAGTTGTTTGGGGGGCCAGGGCTAGACGG
GGAGCAGCAACCAGGCAGTAGGCCGGCTTCCTCTCTTAGTTTGTCGTCTA
CAATTTCTTCGTCGGCTTTGGGAGGGAGCAAGAAGGCGGGCGCCGTATCC
TTCGCGAGCCTCAATTCCCCGGGAGATTTCACGCTCCTTGCCAAGGACCT
GGCCCCTAAATTCAAAAAGGCCGCCAGCAGCAAGGACGTCACCAGCTTTG
TCTCAGAGCTGCTCGCCAGGGGAGCTAAGGACCCCGTGGGCGTGGAAGAC
CTTAACGAGTTGATCAAAAATCTGCAGTCCCTGGCCGTGGAGAAACAGAG
GCAGGCCGACGCGAACCGGAACAAGATCGGGCAGAAGCAGAAGGCGCTGG
CGGCGAAGAAGAGGGAGCATAAGGCGACAGCCGCCAAGCACAAGGAGCTG
TTTGGGGATGATTTTGATGGGGCGGATCCGGATATGGACCAGTACTATGA
TATGGAGGATGAGTTCATGTGA
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Synonyms
Publications