NO02G02690, NO02G02690 (gene) Nannochloropsis oceanica

Overview
NameNO02G02690
Unique NameNO02G02690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length696
Alignment locationchr2:739863..740558 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:739863..740558 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G02690 vs. NCBI_GenBank
Match: XP_005853556.1 (hypothetical protein NGA_0306302 [Nannochloropsis gaditana CCMP526] >EKU22805.1 hypothetical protein NGA_0306302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 76.3 bits (186), Expect = 6.800e-11
Identity = 34/60 (56.67%), Postives = 50/60 (83.33%), Query Frame = 0 
Query:    1 MAAPQQEIADLLDELDRTIAKTYQTMDSLLSANKPTKGTVEDLASCALEFNFFIHHLQIA 61
            M   +Q++ DLLD+L+R +AKTY+TM+SL+SA+KPTKG VEDLA+ + +FN  +H+LQ+A
Sbjct:    1 MPETRQDLGDLLDDLERALAKTYETMNSLISASKPTKGAVEDLAAYSFKFNLSLHNLQLA 60
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BLAST of NO02G02690 vs. NCBI_GenBank
Match: EWM30362.1 (hypothetical protein Naga_100026g34 [Nannochloropsis gaditana])

HSP 1 Score: 75.1 bits (183), Expect = 1.500e-10
Identity = 33/60 (55.00%), Postives = 50/60 (83.33%), Query Frame = 0 
Query:    1 MAAPQQEIADLLDELDRTIAKTYQTMDSLLSANKPTKGTVEDLASCALEFNFFIHHLQIA 61
            M   +Q++ DLLD+++R +AKTY+TM+SL+SA+KPTKG VEDLA+ + +FN  +H+LQ+A
Sbjct:    1 MPETRQDLGDLLDDVERALAKTYETMNSLISASKPTKGAVEDLAAYSFKFNLSLHNLQLA 60
The following BLAST results are available for this feature:
BLAST of NO02G02690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853556.16.800e-1156.67hypothetical protein NGA_0306302 [Nannochloropsis ... [more]
EWM30362.11.500e-1055.00hypothetical protein Naga_100026g34 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006914NSK006914Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02690.1NO02G02690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100026g34gene271Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02690.1NO02G02690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02690 ID=NO02G02690|Name=NO02G02690|organism=Nannochloropsis oceanica|type=gene|length=696bp
ATGGCCGCACCACAGCAAGAGATAGCCGATCTGCTGGACGAATTGGACCG
GACCATTGCGgtgcgtacttgggttggtggctagagagaaaagggacgga
gaaggggttgacgccgcgcaaggcaaagacgacagggttgtgcccttcat
cctagtccatcgacttgattagacatctccttcccccttctatgctcccc
tttcctggttccggaatgattcctgtctgtttcctgcgcttgtacaacgc
aaccaggcattgtccttcgtccccttcccaaacgccacaactccctctag
aaacgcacctacccccttgtccctctcactacacataattcttcacatat
ctgcctacagctaactctactccgtcgatcccctgatttcatgtgacttt
ttacctcccctgacccataaaataaatagAAAACGTACCAAACGATGGAC
TCTCTGCTTTCGGCCAACAAGCCGACCAAGGGCACGGTGGAAGACCTAGC
CTCCTGTGCCCTCGAATTCAACTTTTTCATTCACCACTTGCAAATAGCGA
GACAAGCTTCGAGTTCTCATGTGACCAATTCCACGGCAGCAACGGGGAAA
ACGACAGCTTCCGGTTCTTCCACTGGTCAACAGCAGGAAGAAAGTCAAGG
GTCATCCTCGGGGGGGAAAGGTGCAATGCTGCGACGCTATGCATAG
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protein sequence of NO02G02690.1

>NO02G02690.1-protein ID=NO02G02690.1-protein|Name=NO02G02690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MAAPQQEIADLLDELDRTIAKTYQTMDSLLSANKPTKGTVEDLASCALEF
NFFIHHLQIARQASSSHVTNSTAATGKTTASGSSTGQQQEESQGSSSGGK
GAMLRRYA*
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Synonyms
Publications