NO02G02690.1, NO02G02690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02690.1
Unique NameNO02G02690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length327
Alignment locationchr2:739863..740558 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:739863..740558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G02690.1 vs.
Match: XP_005853556.1 (hypothetical protein NGA_0306302 [Nannochloropsis gaditana CCMP526]; EKU22805.1 hypothetical protein NGA_0306302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 72.4 bits (176), Expect = 9.800e-10
Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 0
Query:    1 MAAPQQEIADLLDELDRTIAKTYQTMDSLLSANKPTKGTVEDLASCALEFNFFIHHLQIARQASSSHVTNSTAATGKTTASGSS 85
            M   +Q++ DLLD+L+R +AKTY+TM+SL+SA+KPTKG VEDLA+ + +FN  +H+LQ+A    +S     T        SG S
Sbjct:    1 MPETRQDLGDLLDDLERALAKTYETMNSLISASKPTKGAVEDLAAYSFKFNLSLHNLQLATSDFASAANVKTIEPDTMQKSGGS 84          
The following BLAST results are available for this feature:
BLAST of NO02G02690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853556.19.800e-1046.43hypothetical protein NGA_0306302 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02690NO02G02690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02690.1NO02G02690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02690.1.cds1NO02G02690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02690.1.cds2NO02G02690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02690.1 ID=NO02G02690.1|Name=NO02G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=327bp
ATGGCCGCACCACAGCAAGAGATAGCCGATCTGCTGGACGAATTGGACCG
GACCATTGCGAAAACGTACCAAACGATGGACTCTCTGCTTTCGGCCAACA
AGCCGACCAAGGGCACGGTGGAAGACCTAGCCTCCTGTGCCCTCGAATTC
AACTTTTTCATTCACCACTTGCAAATAGCGAGACAAGCTTCGAGTTCTCA
TGTGACCAATTCCACGGCAGCAACGGGGAAAACGACAGCTTCCGGTTCTT
CCACTGGTCAACAGCAGGAAGAAAGTCAAGGGTCATCCTCGGGGGGGAAA
GGTGCAATGCTGCGACGCTATGCATAG
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protein sequence of NO02G02690.1

>NO02G02690.1-protein ID=NO02G02690.1-protein|Name=NO02G02690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MAAPQQEIADLLDELDRTIAKTYQTMDSLLSANKPTKGTVEDLASCALEF
NFFIHHLQIARQASSSHVTNSTAATGKTTASGSSTGQQQEESQGSSSGGK
GAMLRRYA*
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mRNA from alignment at chr2:739863..740558+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02690.1 ID=NO02G02690.1|Name=NO02G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=696bp|location=Sequence derived from alignment at chr2:739863..740558+ (Nannochloropsis oceanica)
ATGGCCGCACCACAGCAAGAGATAGCCGATCTGCTGGACGAATTGGACCG GACCATTGCGGTGCGTACTTGGGTTGGTGGCTAGAGAGAAAAGGGACGGA GAAGGGGTTGACGCCGCGCAAGGCAAAGACGACAGGGTTGTGCCCTTCAT CCTAGTCCATCGACTTGATTAGACATCTCCTTCCCCCTTCTATGCTCCCC TTTCCTGGTTCCGGAATGATTCCTGTCTGTTTCCTGCGCTTGTACAACGC AACCAGGCATTGTCCTTCGTCCCCTTCCCAAACGCCACAACTCCCTCTAG AAACGCACCTACCCCCTTGTCCCTCTCACTACACATAATTCTTCACATAT CTGCCTACAGCTAACTCTACTCCGTCGATCCCCTGATTTCATGTGACTTT TTACCTCCCCTGACCCATAAAATAAATAGAAAACGTACCAAACGATGGAC TCTCTGCTTTCGGCCAACAAGCCGACCAAGGGCACGGTGGAAGACCTAGC CTCCTGTGCCCTCGAATTCAACTTTTTCATTCACCACTTGCAAATAGCGA GACAAGCTTCGAGTTCTCATGTGACCAATTCCACGGCAGCAACGGGGAAA ACGACAGCTTCCGGTTCTTCCACTGGTCAACAGCAGGAAGAAAGTCAAGG GTCATCCTCGGGGGGGAAAGGTGCAATGCTGCGACGCTATGCATAG
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Coding sequence (CDS) from alignment at chr2:739863..740558+

>NO02G02690.1 ID=NO02G02690.1|Name=NO02G02690.1|organism=Nannochloropsis oceanica|type=CDS|length=327bp|location=Sequence derived from alignment at chr2:739863..740558+ (Nannochloropsis oceanica)
ATGGCCGCACCACAGCAAGAGATAGCCGATCTGCTGGACGAATTGGACCG
GACCATTGCGAAAACGTACCAAACGATGGACTCTCTGCTTTCGGCCAACA
AGCCGACCAAGGGCACGGTGGAAGACCTAGCCTCCTGTGCCCTCGAATTC
AACTTTTTCATTCACCACTTGCAAATAGCGAGACAAGCTTCGAGTTCTCA
TGTGACCAATTCCACGGCAGCAACGGGGAAAACGACAGCTTCCGGTTCTT
CCACTGGTCAACAGCAGGAAGAAAGTCAAGGGTCATCCTCGGGGGGGAAA
GGTGCAATGCTGCGACGCTATGCATAG
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Synonyms
Publications