NO02G02610, NO02G02610 (gene) Nannochloropsis oceanica

Overview
NameNO02G02610
Unique NameNO02G02610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1145
Alignment locationchr2:725151..726295 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:725151..726295 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G02610 vs. NCBI_GenBank
Match: EWM30405.1 (hypothetical protein Naga_100026g42 [Nannochloropsis gaditana])

HSP 1 Score: 115.5 bits (288), Expect = 2.800e-22
Identity = 56/87 (64.37%), Postives = 63/87 (72.41%), Query Frame = 0 
Query:  139 LRATTTGGEGAALLNLYTATRQVLSCRVTSRTLLRHEAISDRNRHPNINHCLFLITPVCFWAYCKHPKLFATLHPFSPTAPERRPED 226
            +  ++ GGE  A LNLYTAT QVLSCRVT+R L    +    +  P   HCL LITPV FWAYCKHP+LFATLHP SPTAPERRPED
Sbjct:    1 MAVSSRGGESFAFLNLYTATLQVLSCRVTARILRTPTSQIGASSAPTTRHCLLLITPVSFWAYCKHPELFATLHPLSPTAPERRPED 87
The following BLAST results are available for this feature:
BLAST of NO02G02610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30405.12.800e-2264.37hypothetical protein Naga_100026g42 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02610.1NO02G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|143668gene_851Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100026g42gene263Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02610.1NO02G02610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02610 ID=NO02G02610|Name=NO02G02610|organism=Nannochloropsis oceanica|type=gene|length=1145bp
ACCACAGAAATATGGAGCCACTATCAATATCGACCCCGCCTTCTTTGCCT
CGCAGCTCGGCCCAGCCTCCTCTAGCTTCTCCGCTAGACCTCGATGCACC
ATTGCCCCTGTGGAAGTCGTCACCTTCTGTGGCCCCCACGGACGACACGG
CCGGCCGAACCTGCTTTTGCCGCCTCCTGATACGCCTCGAAATGAACTTT
TCTACCATCCCAAATGGTCGGGATGAAAAGGACATGGTGCCGGTCATTGA
ACACGGGGACATGGAGTTCCTCCGCCTCTTTCGTTTCCTCCCCTACGGCG
CCTTGACGGCCTCTCCCACTGCTGCGGCGACTGCCTCGACCACACTGCTG
CATGGTCAGCGTCTATCGATGTTGTTTGGCCCTGCCACCGATTTGACGCG
TGCACAAGCTTTGTTGACGGCATGCCTGCGAGCCACCACCACAGGAGGTG
AAGGCGCTGCCCTCCTCAACCTTTACACTGCCACGCGGCAGGTCTTGAGC
TGTCGGGTTACTTCGCGAACATTGCTTAGACATGAGGCTATAAGTGACAG
AAATAGGCACCCCAATATCAATCATTGCCTTTTTCTCATTACTCCGGTGT
GCTTCTGGGCCTACTGCAAGCACCCGAAGCTCTTTGCTACCCTCCATCCT
TTTTCACCCACGGCGCCGGAGCGACGCCCTGAGGACGTGGTCTATGACAG
CCTTGGGAAGAGGAAACGACGACGCCGCCTACGACAACCAACAAAGCAGC
AGCAAGAGCATCAGGAGGAGCAACAGGAGGAGCAGCAGCATCAGGAGGAG
CAGCAGCATCAGGAGGAGCAGCAGCATCAGGAGGAGCAGCAGATAAAAGA
AAAAGAGGCACCAACAAGCAGGAAGAAGAAAACCAAGCAGCGGCGACAGC
AACAGCAGCGACATTAACAGTTGACGTCTTATTTTTTTTGTACTTCACCG
AAGGAGGGAGTTCCACAGATTTCTATAAGCGGTATTCTTTCACTGACTGC
GGATGAATTAGGAAATAGAAGGGAGAATCACAACAATTTTAAATCGCGCT
AATCAGAAGCAGACCTTGGCAGAGTGGTTGTAAATAAGAAGACTTCTACC
CCAGAAGTTACCAGAATGTATCAATAACTAAGAAAGGACGGCGCA
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protein sequence of NO02G02610.1

>NO02G02610.1-protein ID=NO02G02610.1-protein|Name=NO02G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MEPLSISTPPSLPRSSAQPPLASPLDLDAPLPLWKSSPSVAPTDDTAGRT
CFCRLLIRLEMNFSTIPNGRDEKDMVPVIEHGDMEFLRLFRFLPYGALTA
SPTAAATASTTLLHGQRLSMLFGPATDLTRAQALLTACLRATTTGGEGAA
LLNLYTATRQVLSCRVTSRTLLRHEAISDRNRHPNINHCLFLITPVCFWA
YCKHPKLFATLHPFSPTAPERRPEDVVYDSLGKRKRRRRLRQPTKQQQEH
QEEQQEEQQHQEEQQHQEEQQHQEEQQIKEKEAPTSRKKKTKQRRQQQQR
H*
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Synonyms
Publications