NO02G02610.1, NO02G02610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02610.1
Unique NameNO02G02610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1145
Alignment locationchr2:725151..726295 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:725151..726295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02610.1 vs.
Match: EWM30405.1 (hypothetical protein Naga_100026g42 [Nannochloropsis gaditana])

HSP 1 Score: 129.4 bits (324), Expect = 1.900e-26
Identity = 67/111 (60.36%), Postives = 77/111 (69.37%), Query Frame = 0 
Query:  139 LRATTTGGEGAALLNLYTATRQVLSCRVTSRTLLRHEAISDRNRHPNINHCLFLITPVCFWAYCKHPKLFATLHPFSPTAPERRPEDVVYDSLGKRKRRRRLRQPTKQQQE 250
            +  ++ GGE  A LNLYTAT QVLSCRVT+R L    +    +  P   HCL LITPV FWAYCKHP+LFATLHP SPTAPERRPED  YDS G+RKRRRR     + Q +
Sbjct:    1 MAVSSRGGESFAFLNLYTATLQVLSCRVTARILRTPTSQIGASSAPTTRHCLLLITPVSFWAYCKHPELFATLHPLSPTAPERRPEDFDYDSSGRRKRRRRCHSSAQSQNQ 111
The following BLAST results are available for this feature:
BLAST of NO02G02610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30405.11.900e-2660.36hypothetical protein Naga_100026g42 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02610NO02G02610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02610.1NO02G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02610.1.cds1NO02G02610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02610.1 ID=NO02G02610.1|Name=NO02G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1145bp
ACCACAGAAATATGGAGCCACTATCAATATCGACCCCGCCTTCTTTGCCT
CGCAGCTCGGCCCAGCCTCCTCTAGCTTCTCCGCTAGACCTCGATGCACC
ATTGCCCCTGTGGAAGTCGTCACCTTCTGTGGCCCCCACGGACGACACGG
CCGGCCGAACCTGCTTTTGCCGCCTCCTGATACGCCTCGAAATGAACTTT
TCTACCATCCCAAATGGTCGGGATGAAAAGGACATGGTGCCGGTCATTGA
ACACGGGGACATGGAGTTCCTCCGCCTCTTTCGTTTCCTCCCCTACGGCG
CCTTGACGGCCTCTCCCACTGCTGCGGCGACTGCCTCGACCACACTGCTG
CATGGTCAGCGTCTATCGATGTTGTTTGGCCCTGCCACCGATTTGACGCG
TGCACAAGCTTTGTTGACGGCATGCCTGCGAGCCACCACCACAGGAGGTG
AAGGCGCTGCCCTCCTCAACCTTTACACTGCCACGCGGCAGGTCTTGAGC
TGTCGGGTTACTTCGCGAACATTGCTTAGACATGAGGCTATAAGTGACAG
AAATAGGCACCCCAATATCAATCATTGCCTTTTTCTCATTACTCCGGTGT
GCTTCTGGGCCTACTGCAAGCACCCGAAGCTCTTTGCTACCCTCCATCCT
TTTTCACCCACGGCGCCGGAGCGACGCCCTGAGGACGTGGTCTATGACAG
CCTTGGGAAGAGGAAACGACGACGCCGCCTACGACAACCAACAAAGCAGC
AGCAAGAGCATCAGGAGGAGCAACAGGAGGAGCAGCAGCATCAGGAGGAG
CAGCAGCATCAGGAGGAGCAGCAGCATCAGGAGGAGCAGCAGATAAAAGA
AAAAGAGGCACCAACAAGCAGGAAGAAGAAAACCAAGCAGCGGCGACAGC
AACAGCAGCGACATTAACAGTTGACGTCTTATTTTTTTTGTACTTCACCG
AAGGAGGGAGTTCCACAGATTTCTATAAGCGGTATTCTTTCACTGACTGC
GGATGAATTAGGAAATAGAAGGGAGAATCACAACAATTTTAAATCGCGCT
AATCAGAAGCAGACCTTGGCAGAGTGGTTGTAAATAAGAAGACTTCTACC
CCAGAAGTTACCAGAATGTATCAATAACTAAGAAAGGACGGCGCA
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protein sequence of NO02G02610.1

>NO02G02610.1-protein ID=NO02G02610.1-protein|Name=NO02G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MEPLSISTPPSLPRSSAQPPLASPLDLDAPLPLWKSSPSVAPTDDTAGRT
CFCRLLIRLEMNFSTIPNGRDEKDMVPVIEHGDMEFLRLFRFLPYGALTA
SPTAAATASTTLLHGQRLSMLFGPATDLTRAQALLTACLRATTTGGEGAA
LLNLYTATRQVLSCRVTSRTLLRHEAISDRNRHPNINHCLFLITPVCFWA
YCKHPKLFATLHPFSPTAPERRPEDVVYDSLGKRKRRRRLRQPTKQQQEH
QEEQQEEQQHQEEQQHQEEQQHQEEQQIKEKEAPTSRKKKTKQRRQQQQR
H*
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mRNA from alignment at chr2:725151..726295+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02610.1 ID=NO02G02610.1|Name=NO02G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1145bp|location=Sequence derived from alignment at chr2:725151..726295+ (Nannochloropsis oceanica)
ACCACAGAAATATGGAGCCACTATCAATATCGACCCCGCCTTCTTTGCCT
CGCAGCTCGGCCCAGCCTCCTCTAGCTTCTCCGCTAGACCTCGATGCACC
ATTGCCCCTGTGGAAGTCGTCACCTTCTGTGGCCCCCACGGACGACACGG
CCGGCCGAACCTGCTTTTGCCGCCTCCTGATACGCCTCGAAATGAACTTT
TCTACCATCCCAAATGGTCGGGATGAAAAGGACATGGTGCCGGTCATTGA
ACACGGGGACATGGAGTTCCTCCGCCTCTTTCGTTTCCTCCCCTACGGCG
CCTTGACGGCCTCTCCCACTGCTGCGGCGACTGCCTCGACCACACTGCTG
CATGGTCAGCGTCTATCGATGTTGTTTGGCCCTGCCACCGATTTGACGCG
TGCACAAGCTTTGTTGACGGCATGCCTGCGAGCCACCACCACAGGAGGTG
AAGGCGCTGCCCTCCTCAACCTTTACACTGCCACGCGGCAGGTCTTGAGC
TGTCGGGTTACTTCGCGAACATTGCTTAGACATGAGGCTATAAGTGACAG
AAATAGGCACCCCAATATCAATCATTGCCTTTTTCTCATTACTCCGGTGT
GCTTCTGGGCCTACTGCAAGCACCCGAAGCTCTTTGCTACCCTCCATCCT
TTTTCACCCACGGCGCCGGAGCGACGCCCTGAGGACGTGGTCTATGACAG
CCTTGGGAAGAGGAAACGACGACGCCGCCTACGACAACCAACAAAGCAGC
AGCAAGAGCATCAGGAGGAGCAACAGGAGGAGCAGCAGCATCAGGAGGAG
CAGCAGCATCAGGAGGAGCAGCAGCATCAGGAGGAGCAGCAGATAAAAGA
AAAAGAGGCACCAACAAGCAGGAAGAAGAAAACCAAGCAGCGGCGACAGC
AACAGCAGCGACATTAACAGTTGACGTCTTATTTTTTTTGTACTTCACCG
AAGGAGGGAGTTCCACAGATTTCTATAAGCGGTATTCTTTCACTGACTGC
GGATGAATTAGGAAATAGAAGGGAGAATCACAACAATTTTAAATCGCGCT
AATCAGAAGCAGACCTTGGCAGAGTGGTTGTAAATAAGAAGACTTCTACC
CCAGAAGTTACCAGAATGTATCAATAACTAAGAAAGGACGGCGCA
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Coding sequence (CDS) from alignment at chr2:725151..726295+

>NO02G02610.1 ID=NO02G02610.1|Name=NO02G02610.1|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at chr2:725151..726295+ (Nannochloropsis oceanica)
ATGGAGCCACTATCAATATCGACCCCGCCTTCTTTGCCTCGCAGCTCGGC
CCAGCCTCCTCTAGCTTCTCCGCTAGACCTCGATGCACCATTGCCCCTGT
GGAAGTCGTCACCTTCTGTGGCCCCCACGGACGACACGGCCGGCCGAACC
TGCTTTTGCCGCCTCCTGATACGCCTCGAAATGAACTTTTCTACCATCCC
AAATGGTCGGGATGAAAAGGACATGGTGCCGGTCATTGAACACGGGGACA
TGGAGTTCCTCCGCCTCTTTCGTTTCCTCCCCTACGGCGCCTTGACGGCC
TCTCCCACTGCTGCGGCGACTGCCTCGACCACACTGCTGCATGGTCAGCG
TCTATCGATGTTGTTTGGCCCTGCCACCGATTTGACGCGTGCACAAGCTT
TGTTGACGGCATGCCTGCGAGCCACCACCACAGGAGGTGAAGGCGCTGCC
CTCCTCAACCTTTACACTGCCACGCGGCAGGTCTTGAGCTGTCGGGTTAC
TTCGCGAACATTGCTTAGACATGAGGCTATAAGTGACAGAAATAGGCACC
CCAATATCAATCATTGCCTTTTTCTCATTACTCCGGTGTGCTTCTGGGCC
TACTGCAAGCACCCGAAGCTCTTTGCTACCCTCCATCCTTTTTCACCCAC
GGCGCCGGAGCGACGCCCTGAGGACGTGGTCTATGACAGCCTTGGGAAGA
GGAAACGACGACGCCGCCTACGACAACCAACAAAGCAGCAGCAAGAGCAT
CAGGAGGAGCAACAGGAGGAGCAGCAGCATCAGGAGGAGCAGCAGCATCA
GGAGGAGCAGCAGCATCAGGAGGAGCAGCAGATAAAAGAAAAAGAGGCAC
CAACAAGCAGGAAGAAGAAAACCAAGCAGCGGCGACAGCAACAGCAGCGA
CATTAA
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Synonyms
Publications