NO02G02390, NO02G02390 (gene) Nannochloropsis oceanica

Overview
NameNO02G02390
Unique NameNO02G02390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length930
Alignment locationchr2:661515..662444 -

Link to JBrowse

Properties
Property NameValue
DescriptionTim21-like mitochondrial-like protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:661515..662444 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0030150protein import into mitochondrial matrix
GO:0016043cellular component organization
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005744TIM23 mitochondrial import inner membrane translocase complex
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR013261Tim21
Homology
BLAST of NO02G02390 vs. NCBI_GenBank
Match: EWM30421.1 (tim21-like mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 359.0 bits (920), Expect = 1.500e-95
Identity = 224/315 (71.11%), Postives = 249/315 (79.05%), Query Frame = 0
Query:    1 MAGLVIVVTKAAGPSTRRALLARARGGAARRPLSTGGVS----SASTGLPTTATTHLLLPKRYQPSSMLVPLLGTQMNGCMRRTGGWRG-QSRGG-NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPPEDGEKIGFMRGLAYLTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQALIQSGGSQR 310
            M  LV V++KAAGP TRR +L  + GG  RRPL++        +A T   T  +  LL+  R++PSS++  LLG + NGC RR+G W G   RGG +                   XXXXXXXXXXXXXXXXXXXX    PPE+GEKIGFMRGLAYLTVA IAAGSLYFIVDELMPSR SAN+LFNEAFD VK NH+VLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVT+DMPKGQWMYLLVQD+QTGRVMTLEDNRAM++A++KSASPEERAALQALIQSGGSQR
Sbjct:   42 MTSLVTVMSKAAGPCTRR-VLPMSVGGTGRRPLTSRARPCLNYAADTMRGTLVSRRLLV--RHEPSSLVGRLLGARGNGCARRSGVWLGPDGRGGHSLQLVCKASLSSKKGGPKEGXXXXXXXXXXXXXXXXXXXXIHDDPPEEGEKIGFMRGLAYLTVAAIAAGSLYFIVDELMPSRMSANYLFNEAFDVVKANHEVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTADMPKGQWMYLLVQDMQTGRVMTLEDNRAMYEAMSKSASPEERAALQALIQSGGSQR 353          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: XP_002176581.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51044.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 154.5 bits (389), Expect = 5.500e-34
Identity = 80/158 (50.63%), Postives = 109/158 (68.99%), Query Frame = 0
Query:  153 VAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYV-GEDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNR-AMHQALAKSASPEERAALQALIQSGGSQ 309
            +AV AA   Y+I  EL P++ S N +F+ +F A++ + +V  RYG+ LK YGRD GG REGRRNF+EH  Y   EDGSKR R+R+N+EG FG AFVFAEV++ MP G+++Y+LVQD   GRV T+ DNR A+  A   S S E ++A+  L+  GG +
Sbjct:   88 IAVFAACCAYYIGRELFPTKMSPNRVFDRSFAAIRADSEVQRRYGDNLKAYGRDHGGHREGRRNFIEHTEYTDAEDGSKRTRVRYNLEGRFGTAFVFAEVSASMPSGEFVYILVQDKSNGRVHTVVDNRAALTAARLASGSKEAQSAMSQLLGGGGQK 245          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: XP_002289252.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92789.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 147.5 bits (371), Expect = 6.800e-32
Identity = 78/172 (45.35%), Postives = 115/172 (66.86%), Query Frame = 0
Query:  139 GEKIGFMRGLAYLTVA-VIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVG-EDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQALIQSGGSQ 309
            GEK+     L +   A   A+   Y+I  EL+P++ S N++F++A   +++N +V  R+GE  K YGRD GG REGRRNF+EH  YV  +DG+KR R+RFN+EG +G+AFVFAEV+ DMP G+++YLLVQD + G+V+T+ DNR+   A   +   +E A + A +  GG +
Sbjct:  125 GEKVVVGTRLFFWAGAFAFASVCAYYIGKELIPTKMSPNNVFDKATSIIRENAEVKRRFGEAFKTYGRDHGGHREGRRNFIEHTEYVSPDDGTKRTRVRFNLEGQYGNAFVFAEVSKDMPSGEFVYLLVQDKRNGQVITVVDNRSALLAKRMAGGSQEGADVFANLLGGGKK 296          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: EJK66897.1 (hypothetical protein THAOC_12135 [Thalassiosira oceanica])

HSP 1 Score: 146.4 bits (368), Expect = 1.500e-31
Identity = 77/168 (45.83%), Postives = 110/168 (65.48%), Query Frame = 0
Query:  139 GEKIGFMRGLAYLTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQALIQSGG 307
            G ++ F  G A+   +V A    Y+I  EL+P++ S N  F+ A  A++QN +V  R+GE  K YGRD GG REGRRNF+EH  Y  EDG+KR R+RFN+EG +G AFVFAEV+++M  G+++Y+LVQD + G V+T++DNRA   A   +   +E   + A +  GG
Sbjct:   83 GTRLFFWAG-AFAFASVCA----YYIGKELLPTKMSPNTTFDRATSAIRQNEEVKRRFGEGFKTYGRDHGGHREGRRNFIEHTEYTAEDGTKRTRVRFNLEGQYGSAFVFAEVSNEMASGEFVYILVQDKRNGAVITVQDNRAALLARQLAGGNKEGQDVFANLLGGG 245          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: CBN78209.1 (Mitochondrial import inner membrane translocase TIM21-like protein [Ectocarpus siliculosus])

HSP 1 Score: 144.1 bits (362), Expect = 7.500e-31
Identity = 72/163 (44.17%), Postives = 103/163 (63.19%), Query Frame = 0
Query:  141 KIGFMRGLAYLTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGE-DGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQALI 303
            KI  ++ +A + V  +   +L   + EL PS  +   + + A D  + + D  N +G PLKGYGRD    REGRRNFVEH ++    D SKR R+RFN+EGP GH   +AEV++ M  G+W+YL VQD+QTG V+TL DNRA+  A A++ S EE+ A + ++
Sbjct:   41 KISIVKTVAGVCVLGLVVAALSATITELWPSHMAPQSIMSHAHDVFQADPDTANHFGTPLKGYGRDNNRHREGRRNFVEHVDHEDPIDKSKRTRVRFNVEGPHGHGMAYAEVSNKMESGEWVYLCVQDLQTGHVITLHDNRALLMAQAQAGSDEEKNAFRKML 203          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: GAX99737.1 (Hypothetical protein PINS_007588 [Pythium insidiosum])

HSP 1 Score: 143.7 bits (361), Expect = 9.800e-31
Identity = 75/152 (49.34%), Postives = 100/152 (65.79%), Query Frame = 0
Query:  156 IAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQALIQSGGS 308
            + A  +Y ++ ELMP+R S N LF E+ D V +N DV +R G P+ GYG D GG REGRRN VEH +   + G+ RLRI++NI+GP GHAFVFAEV  DM KG+++YL+VQ  +TG V+ + DNR   Q LA  +  E+ A  Q L  S  +
Sbjct:   97 LGAAGIYMVIRELMPNRMSPNGLFGESLDIVSENTDVTSRLGMPIHGYGHDHGGHREGRRNRVEHVDLKDKXGNPRLRIKYNIKGPAGHAFVFAEVNHDMKKGEYVYLIVQFTKTGEVVKIIDNR---QILAADSKEEQDALRQLLGNSNAA 245          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: XP_009528032.1 (hypothetical protein PHYSODRAFT_286140 [Phytophthora sojae] >EGZ18974.1 hypothetical protein PHYSODRAFT_286140 [Phytophthora sojae])

HSP 1 Score: 142.9 bits (359), Expect = 1.700e-30
Identity = 72/153 (47.06%), Postives = 105/153 (68.63%), Query Frame = 0
Query:  150 YLTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQALI 303
            +L +  + A  +YF+  EL+P+R S N LF+E+ D + +N DV +R G P+ GYG D GG REGRRN +EH N   +DG+ RLRI++NI+GP GHA+VFAEV  DM K +++YL+VQ  +TG ++ + DNR +  A +K    EE+ AL+ L+
Sbjct:   83 WLGLIGLGAVGVYFVARELLPNRMSPNGLFSESLDFLSENTDVTSRLGLPIHGYGHDHGGHREGRRNRIEHVNLKAKDGTPRLRIKYNIKGPTGHAYVFAEVNQDMKKNEYVYLIVQVTKTGELLKIVDNRQILSAESK----EEQDALRQLL 231          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: OWZ04396.1 (Transmembrane protein [Phytophthora megakarya])

HSP 1 Score: 142.9 bits (359), Expect = 1.700e-30
Identity = 74/153 (48.37%), Postives = 106/153 (69.28%), Query Frame = 0
Query:  150 YLTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQALI 303
            +L +  + A  +YF+  EL+P+R S N LF+E+ D V  N DV +R G P+ GYG D GG REGRRN +EH N   +DG+ RLRI++NI+GP GHA+VFAEV  +M K +++YL+VQ  +TG ++ + DNR   Q LA + +PEE+ AL+ L+
Sbjct:   78 WLGLIGLGAVGVYFVARELLPNRMSPNGLFSESLDFVSDNTDVSSRLGLPIHGYGHDHGGHREGRRNRIEHVNLKAKDGTPRLRIKYNIKGPSGHAYVFAEVNQNMKKNEYVYLIVQITKTGELLKIVDNR---QILA-AETPEEQDALRQLL 226          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: ETP30164.1 (hypothetical protein F442_20773 [Phytophthora parasitica P10297])

HSP 1 Score: 140.6 bits (353), Expect = 8.300e-30
Identity = 72/155 (46.45%), Postives = 102/155 (65.81%), Query Frame = 0
Query:  147 GLAYLTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQAL 302
            G  +L +  + A  +YF+  EL+P+R S N LF+E+ D + +N DV +R G P+ GYG D GG REGRRN +EH N   +DG+ RLRI++NI+GP GHA+VFAEV  +M K +++YL+VQ  +TG ++ + DNR   Q LA     E+ A  Q L
Sbjct:   76 GSFWLGLIGLGAVGVYFVARELLPNRMSPNGLFSESLDFLSENTDVTSRLGLPIHGYGHDHGGHREGRRNRIEHVNLQAKDGTPRLRIKYNIKGPSGHAYVFAEVNKNMKKNEYVYLIVQVTKTGELLKIVDNR---QILAAETKEEQDALRQLL 227          
BLAST of NO02G02390 vs. NCBI_GenBank
Match: ETP30165.1 (hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 140.6 bits (353), Expect = 8.300e-30
Identity = 72/155 (46.45%), Postives = 102/155 (65.81%), Query Frame = 0
Query:  147 GLAYLTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQAL 302
            G  +L +  + A  +YF+  EL+P+R S N LF+E+ D + +N DV +R G P+ GYG D GG REGRRN +EH N   +DG+ RLRI++NI+GP GHA+VFAEV  +M K +++YL+VQ  +TG ++ + DNR   Q LA     E+ A  Q L
Sbjct:   39 GSFWLGLIGLGAVGVYFVARELLPNRMSPNGLFSESLDFLSENTDVTSRLGLPIHGYGHDHGGHREGRRNRIEHVNLQAKDGTPRLRIKYNIKGPSGHAYVFAEVNKNMKKNEYVYLIVQVTKTGELLKIVDNR---QILAAETKEEQDALRQLL 190          
The following BLAST results are available for this feature:
BLAST of NO02G02390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30421.11.500e-9571.11tim21-like mitochondrial-like protein [Nannochloro... [more]
XP_002176581.15.500e-3450.63predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002289252.16.800e-3245.35predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK66897.11.500e-3145.83hypothetical protein THAOC_12135 [Thalassiosira oc... [more]
CBN78209.17.500e-3144.17Mitochondrial import inner membrane translocase TI... [more]
GAX99737.19.800e-3149.34Hypothetical protein PINS_007588 [Pythium insidios... [more]
XP_009528032.11.700e-3047.06hypothetical protein PHYSODRAFT_286140 [Phytophtho... [more]
OWZ04396.11.700e-3048.37Transmembrane protein [Phytophthora megakarya][more]
ETP30164.18.300e-3046.45hypothetical protein F442_20773 [Phytophthora para... [more]
ETP30165.18.300e-3046.45hypothetical protein, variant [Phytophthora parasi... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006880NSK006880Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02390.1NO02G02390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523331gene_827Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100210g12gene241Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02390.1NO02G02390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02390 ID=NO02G02390|Name=NO02G02390|organism=Nannochloropsis oceanica|type=gene|length=930bp
ATGGCAGGCCTTGTAATCGTCGTGACGAAGGCCGCAGGACCATCTACCCG
TCGCGCGCTGTTGGCCAGGGCAAGAGGGGGAGCGGCTCGTAGACCTCTTT
CGACAGGCGGAGTATCATCTGCTTCGACTGGTCTCCCCACCACTGCCACC
ACACACCTCCTCCTTCCCAAGCGCTACCAGCCCTCTTCGATGCTGGTCCC
GTTGCTGGGCACACAGATGAATGGATGCATGCGGCGGACCGGTGGCTGGC
GGGGTCAAAGCAGAGGAGGCAACCCATCGTCTCCAGCGGCAGCAGGTTTT
AGCACCAAGAACGAGGATGCGGGGGGAAGAAAGGAGGAGGAAGAGGAAGA
GAAAAACCAAGAGAAGCAACAGCAAGAAGAAGAAGAACCGGAAACCGAGG
GCCCGCCGGAGGATGGGGAAAAGATAGGGTTCATGCGTGGATTAGCTTAC
CTAACCGTGGCCGTCATTGCGGCGGGTTCCTTGTACTTTATCGTGGACGA
GCTCATGCCCAGTCGCACGAGCGCCAACCACCTCTTTAACGAGGCATTCG
ACGCAGTGAAACAAAACCATGACGTGTTGAATCGGTACGGGGAGCCATTG
AAAGGTTACGGCCGGGATGGGGGGGGACGGCGGGAGGGACGCAGAAATTT
TGTGGAGCATAAGAATTATGTGGGGGAGGATGGGAGTAAGAGGCTGCGGA
TTCGCTTTAACATTGAAGGGCCATTTGGACACGCGTTTGTATTTGCAGAG
GTGACATCAGACATGCCCAAGGGACAATGGATGTATTTATTGGTCCAGGA
CATTCAAACGGGGCGGGTGATGACGTTGGAAGATAACCGTGCCATGCACC
AGGCCTTGGCCAAGTCGGCCTCGCCCGAAGAGAGGGCGGCGTTGCAGGCG
TTGATACAGAGTGGAGGAAGCCAGCGGTAA
back to top

protein sequence of NO02G02390.1

>NO02G02390.1-protein ID=NO02G02390.1-protein|Name=NO02G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MAGLVIVVTKAAGPSTRRALLARARGGAARRPLSTGGVSSASTGLPTTAT
THLLLPKRYQPSSMLVPLLGTQMNGCMRRTGGWRGQSRGGNPSSPAAAGF
STKNEDAGGRKEEEEEEKNQEKQQQEEEEPETEGPPEDGEKIGFMRGLAY
LTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPL
KGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAE
VTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQA
LIQSGGSQR*
back to top
Synonyms
Publications