NO02G02390.1, NO02G02390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02390.1
Unique NameNO02G02390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length930
Alignment locationchr2:661515..662444 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:661515..662444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G02390.1 vs.
Match: EWM30421.1 (tim21-like mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 378.3 bits (970), Expect = 2.400e-101
Identity = 217/315 (68.89%), Postives = 249/315 (79.05%), Query Frame = 0
Query:    1 MAGLVIVVTKAAGPSTRRALLARARGGAARRPLSTGGVS----SASTGLPTTATTHLLLPKRYQPSSMLVPLLGTQMNGCMRRTGGWRGQSRGGNPSSPAAAGFSTKNEDAGGRKEE--EEEEKNQEKQQQEEEEPETEGPPEDGEKIGFMRGLAYLTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQALIQSGGSQR 310
            M  LV V++KAAGP TRR +L  + GG  RRPL++        +A T   T  +  LL+  R++PSS++  LLG + NGC RR+G W G    G  S       S  ++  G ++ E  EE E  +EKQ+Q+EEEP  + PPE+GEKIGFMRGLAYLTVA IAAGSLYFIVDELMPSR SAN+LFNEAFD VK NH+VLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVT+DMPKGQWMYLLVQD+QTGRVMTLEDNRAM++A++KSASPEERAALQALIQSGGSQR
Sbjct:   42 MTSLVTVMSKAAGPCTRR-VLPMSVGGTGRRPLTSRARPCLNYAADTMRGTLVSRRLLV--RHEPSSLVGRLLGARGNGCARRSGVWLGPDGRGGHSLQLVCKASLSSKKGGPKEGEGREEAETEREKQKQQEEEPIHDDPPEEGEKIGFMRGLAYLTVAAIAAGSLYFIVDELMPSRMSANYLFNEAFDVVKANHEVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTADMPKGQWMYLLVQDMQTGRVMTLEDNRAMYEAMSKSASPEERAALQALIQSGGSQR 353          
The following BLAST results are available for this feature:
BLAST of NO02G02390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30421.12.400e-10168.89tim21-like mitochondrial-like protein [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02390NO02G02390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02390.1NO02G02390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02390.1.cds1NO02G02390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02390.1 ID=NO02G02390.1|Name=NO02G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=930bp
ATGGCAGGCCTTGTAATCGTCGTGACGAAGGCCGCAGGACCATCTACCCG
TCGCGCGCTGTTGGCCAGGGCAAGAGGGGGAGCGGCTCGTAGACCTCTTT
CGACAGGCGGAGTATCATCTGCTTCGACTGGTCTCCCCACCACTGCCACC
ACACACCTCCTCCTTCCCAAGCGCTACCAGCCCTCTTCGATGCTGGTCCC
GTTGCTGGGCACACAGATGAATGGATGCATGCGGCGGACCGGTGGCTGGC
GGGGTCAAAGCAGAGGAGGCAACCCATCGTCTCCAGCGGCAGCAGGTTTT
AGCACCAAGAACGAGGATGCGGGGGGAAGAAAGGAGGAGGAAGAGGAAGA
GAAAAACCAAGAGAAGCAACAGCAAGAAGAAGAAGAACCGGAAACCGAGG
GCCCGCCGGAGGATGGGGAAAAGATAGGGTTCATGCGTGGATTAGCTTAC
CTAACCGTGGCCGTCATTGCGGCGGGTTCCTTGTACTTTATCGTGGACGA
GCTCATGCCCAGTCGCACGAGCGCCAACCACCTCTTTAACGAGGCATTCG
ACGCAGTGAAACAAAACCATGACGTGTTGAATCGGTACGGGGAGCCATTG
AAAGGTTACGGCCGGGATGGGGGGGGACGGCGGGAGGGACGCAGAAATTT
TGTGGAGCATAAGAATTATGTGGGGGAGGATGGGAGTAAGAGGCTGCGGA
TTCGCTTTAACATTGAAGGGCCATTTGGACACGCGTTTGTATTTGCAGAG
GTGACATCAGACATGCCCAAGGGACAATGGATGTATTTATTGGTCCAGGA
CATTCAAACGGGGCGGGTGATGACGTTGGAAGATAACCGTGCCATGCACC
AGGCCTTGGCCAAGTCGGCCTCGCCCGAAGAGAGGGCGGCGTTGCAGGCG
TTGATACAGAGTGGAGGAAGCCAGCGGTAA
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protein sequence of NO02G02390.1

>NO02G02390.1-protein ID=NO02G02390.1-protein|Name=NO02G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MAGLVIVVTKAAGPSTRRALLARARGGAARRPLSTGGVSSASTGLPTTAT
THLLLPKRYQPSSMLVPLLGTQMNGCMRRTGGWRGQSRGGNPSSPAAAGF
STKNEDAGGRKEEEEEEKNQEKQQQEEEEPETEGPPEDGEKIGFMRGLAY
LTVAVIAAGSLYFIVDELMPSRTSANHLFNEAFDAVKQNHDVLNRYGEPL
KGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAE
VTSDMPKGQWMYLLVQDIQTGRVMTLEDNRAMHQALAKSASPEERAALQA
LIQSGGSQR*
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mRNA from alignment at chr2:661515..662444-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02390.1 ID=NO02G02390.1|Name=NO02G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=930bp|location=Sequence derived from alignment at chr2:661515..662444- (Nannochloropsis oceanica)
ATGGCAGGCCTTGTAATCGTCGTGACGAAGGCCGCAGGACCATCTACCCG TCGCGCGCTGTTGGCCAGGGCAAGAGGGGGAGCGGCTCGTAGACCTCTTT CGACAGGCGGAGTATCATCTGCTTCGACTGGTCTCCCCACCACTGCCACC ACACACCTCCTCCTTCCCAAGCGCTACCAGCCCTCTTCGATGCTGGTCCC GTTGCTGGGCACACAGATGAATGGATGCATGCGGCGGACCGGTGGCTGGC GGGGTCAAAGCAGAGGAGGCAACCCATCGTCTCCAGCGGCAGCAGGTTTT AGCACCAAGAACGAGGATGCGGGGGGAAGAAAGGAGGAGGAAGAGGAAGA GAAAAACCAAGAGAAGCAACAGCAAGAAGAAGAAGAACCGGAAACCGAGG GCCCGCCGGAGGATGGGGAAAAGATAGGGTTCATGCGTGGATTAGCTTAC CTAACCGTGGCCGTCATTGCGGCGGGTTCCTTGTACTTTATCGTGGACGA GCTCATGCCCAGTCGCACGAGCGCCAACCACCTCTTTAACGAGGCATTCG ACGCAGTGAAACAAAACCATGACGTGTTGAATCGGTACGGGGAGCCATTG AAAGGTTACGGCCGGGATGGGGGGGGACGGCGGGAGGGACGCAGAAATTT TGTGGAGCATAAGAATTATGTGGGGGAGGATGGGAGTAAGAGGCTGCGGA TTCGCTTTAACATTGAAGGGCCATTTGGACACGCGTTTGTATTTGCAGAG GTGACATCAGACATGCCCAAGGGACAATGGATGTATTTATTGGTCCAGGA CATTCAAACGGGGCGGGTGATGACGTTGGAAGATAACCGTGCCATGCACC AGGCCTTGGCCAAGTCGGCCTCGCCCGAAGAGAGGGCGGCGTTGCAGGCG TTGATACAGAGTGGAGGAAGCCAGCGGTAA
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Coding sequence (CDS) from alignment at chr2:661515..662444-

>NO02G02390.1 ID=NO02G02390.1|Name=NO02G02390.1|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at chr2:661515..662444- (Nannochloropsis oceanica)
ATGGCAGGCCTTGTAATCGTCGTGACGAAGGCCGCAGGACCATCTACCCG
TCGCGCGCTGTTGGCCAGGGCAAGAGGGGGAGCGGCTCGTAGACCTCTTT
CGACAGGCGGAGTATCATCTGCTTCGACTGGTCTCCCCACCACTGCCACC
ACACACCTCCTCCTTCCCAAGCGCTACCAGCCCTCTTCGATGCTGGTCCC
GTTGCTGGGCACACAGATGAATGGATGCATGCGGCGGACCGGTGGCTGGC
GGGGTCAAAGCAGAGGAGGCAACCCATCGTCTCCAGCGGCAGCAGGTTTT
AGCACCAAGAACGAGGATGCGGGGGGAAGAAAGGAGGAGGAAGAGGAAGA
GAAAAACCAAGAGAAGCAACAGCAAGAAGAAGAAGAACCGGAAACCGAGG
GCCCGCCGGAGGATGGGGAAAAGATAGGGTTCATGCGTGGATTAGCTTAC
CTAACCGTGGCCGTCATTGCGGCGGGTTCCTTGTACTTTATCGTGGACGA
GCTCATGCCCAGTCGCACGAGCGCCAACCACCTCTTTAACGAGGCATTCG
ACGCAGTGAAACAAAACCATGACGTGTTGAATCGGTACGGGGAGCCATTG
AAAGGTTACGGCCGGGATGGGGGGGGACGGCGGGAGGGACGCAGAAATTT
TGTGGAGCATAAGAATTATGTGGGGGAGGATGGGAGTAAGAGGCTGCGGA
TTCGCTTTAACATTGAAGGGCCATTTGGACACGCGTTTGTATTTGCAGAG
GTGACATCAGACATGCCCAAGGGACAATGGATGTATTTATTGGTCCAGGA
CATTCAAACGGGGCGGGTGATGACGTTGGAAGATAACCGTGCCATGCACC
AGGCCTTGGCCAAGTCGGCCTCGCCCGAAGAGAGGGCGGCGTTGCAGGCG
TTGATACAGAGTGGAGGAAGCCAGCGGTAA
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Synonyms
Publications