NO02G02340, NO02G02340 (gene) Nannochloropsis oceanica

Overview
NameNO02G02340
Unique NameNO02G02340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length717
Alignment locationchr2:652620..653336 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:652620..653336 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G02340 vs. NCBI_GenBank
Match: EWM30422.1 (hypothetical protein Naga_100210g7 [Nannochloropsis gaditana])

HSP 1 Score: 317.0 bits (811), Expect = 5.000e-83
Identity = 154/213 (72.30%), Postives = 182/213 (85.45%), Query Frame = 0 
Query:   26 PSVYILRQTLYSGSSTAATWSVTKTWLDIDEWQAQANRRLGYVFPPLPSQELSADNILLLEAYLNQVVQNDALWRGSSDATSLLAFFQLPTSVTEDMSTPTYSVDVFDVDGTQIRGEEKNAKDVKTGALLAGATAGFFLGGPFGAALGALAANSASSRDDSLGDLTRTAGKGFNVAVKQVKRFNDRYDLTERGKEIFRKGVNTVKNVVDKMEE 239
            PSVY LRQT+YSG+S   TW VTK+W +ID+WQ + NR+LG++ PP+P QE +A N  L+EAYLNQV+Q D LW  + DA  +L+FF +P+ V ED++TPTYSVDVFDVDGT I G+EK+AKDVKTGALLAGATAGF LGGPFGAALGALAANSAS+RDDSLGDLTRTAGKG   AVKQVKR NDRYDLTERGK+IF+KGV+TVKNVVDK++E
Sbjct:  102 PSVYELRQTVYSGTSAVETWCVTKSWSEIDDWQIRTNRKLGFILPPIPPQEAAAKNYFLMEAYLNQVIQIDGLWANNKDAGDVLSFFDVPSFVREDLATPTYSVDVFDVDGTPITGKEKDAKDVKTGALLAGATAGFVLGGPFGAALGALAANSASARDDSLGDLTRTAGKGVMAAVKQVKRLNDRYDLTERGKDIFKKGVDTVKNVVDKLDE 314
The following BLAST results are available for this feature:
BLAST of NO02G02340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30422.15.000e-8372.30hypothetical protein Naga_100210g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006875NSK006875Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02340.1NO02G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574255gene_821Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100210g7gene236Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02340.1NO02G02340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02340 ID=NO02G02340|Name=NO02G02340|organism=Nannochloropsis oceanica|type=gene|length=717bp
ATGGCAGCAGGATACCCCTCTTCTTCCTCTTCCTCCTCCCGCGATCGCAT
CACCATCACCCTCTCCACCTCCGCTCCCTCAGTCTACATCCTCCGACAGA
CCCTTTATTCCGGCAGTTCTACAGCAGCAACATGGAGTGTCACCAAGACA
TGGTTGGACATTGACGAATGGCAGGCGCAGGCAAACAGGAGGCTAGGCTA
CGTCTTTCCACCCTTGCCCTCTCAAGAACTCTCGGCGGATAACATTTTGC
TTCTCGAAGCTTACCTGAACCAAGTCGTTCAAAATGACGCCCTGTGGAGA
GGCAGCAGCGATGCAACTTCCCTCCTGGCCTTTTTCCAGCTCCCCACCTC
TGTAACAGAAGACATGTCCACCCCTACTTACAGCGTTGATGTCTTCGACG
TGGATGGAACCCAAATTAGAGGGGAGGAAAAAAACGCCAAGGACGTGAAG
ACGGGGGCATTGCTGGCGGGTGCTACCGCGGGATTTTTCCTCGGAGGTCC
ATTTGGTGCTGCGTTGGGGGCATTGGCTGCGAATAGCGCTTCGTCCAGAG
ACGACAGTTTGGGGGATTTGACACGGACGGCGGGGAAGGGTTTTAATGTG
GCTGTAAAACAGGTGAAGAGGTTTAACGATCGGTATGACCTGACGGAGAG
GGGCAAGGAGATTTTCAGGAAGGGAGTGAATACTGTCAAGAATGTCGTGG
ATAAGATGGAGGAGTAG
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protein sequence of NO02G02340.1

>NO02G02340.1-protein ID=NO02G02340.1-protein|Name=NO02G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MAAGYPSSSSSSSRDRITITLSTSAPSVYILRQTLYSGSSTAATWSVTKT
WLDIDEWQAQANRRLGYVFPPLPSQELSADNILLLEAYLNQVVQNDALWR
GSSDATSLLAFFQLPTSVTEDMSTPTYSVDVFDVDGTQIRGEEKNAKDVK
TGALLAGATAGFFLGGPFGAALGALAANSASSRDDSLGDLTRTAGKGFNV
AVKQVKRFNDRYDLTERGKEIFRKGVNTVKNVVDKMEE*
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Synonyms
Publications