NO02G02340.1, NO02G02340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02340.1
Unique NameNO02G02340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length717
Alignment locationchr2:652620..653336 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:652620..653336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02340.1 vs.
Match: EWM30422.1 (hypothetical protein Naga_100210g7 [Nannochloropsis gaditana])

HSP 1 Score: 332.8 bits (852), Expect = 8.800e-88
Identity = 166/237 (70.04%), Postives = 198/237 (83.54%), Query Frame = 0 
Query:    2 AAGYPSSSSSSSRDRITITLSTSAPSVYILRQTLYSGSSTAATWSVTKTWLDIDEWQAQANRRLGYVFPPLPSQELSADNILLLEAYLNQVVQNDALWRGSSDATSLLAFFQLPTSVTEDMSTPTYSVDVFDVDGTQIRGEEKNAKDVKTGALLAGATAGFFLGGPFGAALGALAANSASSRDDSLGDLTRTAGKGFNVAVKQVKRFNDRYDLTERGKEIFRKGVNTVKNVVDKMEE 239
            A G    +  SSR+RITIT+ST+ PSVY LRQT+YSG+S   TW VTK+W +ID+WQ + NR+LG++ PP+P QE +A N  L+EAYLNQV+Q D LW  + DA  +L+FF +P+ V ED++TPTYSVDVFDVDGT I G+EK+AKDVKTGALLAGATAGF LGGPFGAALGALAANSAS+RDDSLGDLTRTAGKG   AVKQVKR NDRYDLTERGK+IF+KGV+TVKNVVDK++E
Sbjct:   78 ATGSAGGTGPSSRERITITVSTTVPSVYELRQTVYSGTSAVETWCVTKSWSEIDDWQIRTNRKLGFILPPIPPQEAAAKNYFLMEAYLNQVIQIDGLWANNKDAGDVLSFFDVPSFVREDLATPTYSVDVFDVDGTPITGKEKDAKDVKTGALLAGATAGFVLGGPFGAALGALAANSASARDDSLGDLTRTAGKGVMAAVKQVKRLNDRYDLTERGKDIFKKGVDTVKNVVDKLDE 314
The following BLAST results are available for this feature:
BLAST of NO02G02340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30422.18.800e-8870.04hypothetical protein Naga_100210g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02340NO02G02340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02340.1NO02G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02340.1.cds1NO02G02340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02340.1 ID=NO02G02340.1|Name=NO02G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=717bp
ATGGCAGCAGGATACCCCTCTTCTTCCTCTTCCTCCTCCCGCGATCGCAT
CACCATCACCCTCTCCACCTCCGCTCCCTCAGTCTACATCCTCCGACAGA
CCCTTTATTCCGGCAGTTCTACAGCAGCAACATGGAGTGTCACCAAGACA
TGGTTGGACATTGACGAATGGCAGGCGCAGGCAAACAGGAGGCTAGGCTA
CGTCTTTCCACCCTTGCCCTCTCAAGAACTCTCGGCGGATAACATTTTGC
TTCTCGAAGCTTACCTGAACCAAGTCGTTCAAAATGACGCCCTGTGGAGA
GGCAGCAGCGATGCAACTTCCCTCCTGGCCTTTTTCCAGCTCCCCACCTC
TGTAACAGAAGACATGTCCACCCCTACTTACAGCGTTGATGTCTTCGACG
TGGATGGAACCCAAATTAGAGGGGAGGAAAAAAACGCCAAGGACGTGAAG
ACGGGGGCATTGCTGGCGGGTGCTACCGCGGGATTTTTCCTCGGAGGTCC
ATTTGGTGCTGCGTTGGGGGCATTGGCTGCGAATAGCGCTTCGTCCAGAG
ACGACAGTTTGGGGGATTTGACACGGACGGCGGGGAAGGGTTTTAATGTG
GCTGTAAAACAGGTGAAGAGGTTTAACGATCGGTATGACCTGACGGAGAG
GGGCAAGGAGATTTTCAGGAAGGGAGTGAATACTGTCAAGAATGTCGTGG
ATAAGATGGAGGAGTAG
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protein sequence of NO02G02340.1

>NO02G02340.1-protein ID=NO02G02340.1-protein|Name=NO02G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MAAGYPSSSSSSSRDRITITLSTSAPSVYILRQTLYSGSSTAATWSVTKT
WLDIDEWQAQANRRLGYVFPPLPSQELSADNILLLEAYLNQVVQNDALWR
GSSDATSLLAFFQLPTSVTEDMSTPTYSVDVFDVDGTQIRGEEKNAKDVK
TGALLAGATAGFFLGGPFGAALGALAANSASSRDDSLGDLTRTAGKGFNV
AVKQVKRFNDRYDLTERGKEIFRKGVNTVKNVVDKMEE*
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mRNA from alignment at chr2:652620..653336+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02340.1 ID=NO02G02340.1|Name=NO02G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=717bp|location=Sequence derived from alignment at chr2:652620..653336+ (Nannochloropsis oceanica)
ATGGCAGCAGGATACCCCTCTTCTTCCTCTTCCTCCTCCCGCGATCGCAT
CACCATCACCCTCTCCACCTCCGCTCCCTCAGTCTACATCCTCCGACAGA
CCCTTTATTCCGGCAGTTCTACAGCAGCAACATGGAGTGTCACCAAGACA
TGGTTGGACATTGACGAATGGCAGGCGCAGGCAAACAGGAGGCTAGGCTA
CGTCTTTCCACCCTTGCCCTCTCAAGAACTCTCGGCGGATAACATTTTGC
TTCTCGAAGCTTACCTGAACCAAGTCGTTCAAAATGACGCCCTGTGGAGA
GGCAGCAGCGATGCAACTTCCCTCCTGGCCTTTTTCCAGCTCCCCACCTC
TGTAACAGAAGACATGTCCACCCCTACTTACAGCGTTGATGTCTTCGACG
TGGATGGAACCCAAATTAGAGGGGAGGAAAAAAACGCCAAGGACGTGAAG
ACGGGGGCATTGCTGGCGGGTGCTACCGCGGGATTTTTCCTCGGAGGTCC
ATTTGGTGCTGCGTTGGGGGCATTGGCTGCGAATAGCGCTTCGTCCAGAG
ACGACAGTTTGGGGGATTTGACACGGACGGCGGGGAAGGGTTTTAATGTG
GCTGTAAAACAGGTGAAGAGGTTTAACGATCGGTATGACCTGACGGAGAG
GGGCAAGGAGATTTTCAGGAAGGGAGTGAATACTGTCAAGAATGTCGTGG
ATAAGATGGAGGAGTAG
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Coding sequence (CDS) from alignment at chr2:652620..653336+

>NO02G02340.1 ID=NO02G02340.1|Name=NO02G02340.1|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr2:652620..653336+ (Nannochloropsis oceanica)
ATGGCAGCAGGATACCCCTCTTCTTCCTCTTCCTCCTCCCGCGATCGCAT
CACCATCACCCTCTCCACCTCCGCTCCCTCAGTCTACATCCTCCGACAGA
CCCTTTATTCCGGCAGTTCTACAGCAGCAACATGGAGTGTCACCAAGACA
TGGTTGGACATTGACGAATGGCAGGCGCAGGCAAACAGGAGGCTAGGCTA
CGTCTTTCCACCCTTGCCCTCTCAAGAACTCTCGGCGGATAACATTTTGC
TTCTCGAAGCTTACCTGAACCAAGTCGTTCAAAATGACGCCCTGTGGAGA
GGCAGCAGCGATGCAACTTCCCTCCTGGCCTTTTTCCAGCTCCCCACCTC
TGTAACAGAAGACATGTCCACCCCTACTTACAGCGTTGATGTCTTCGACG
TGGATGGAACCCAAATTAGAGGGGAGGAAAAAAACGCCAAGGACGTGAAG
ACGGGGGCATTGCTGGCGGGTGCTACCGCGGGATTTTTCCTCGGAGGTCC
ATTTGGTGCTGCGTTGGGGGCATTGGCTGCGAATAGCGCTTCGTCCAGAG
ACGACAGTTTGGGGGATTTGACACGGACGGCGGGGAAGGGTTTTAATGTG
GCTGTAAAACAGGTGAAGAGGTTTAACGATCGGTATGACCTGACGGAGAG
GGGCAAGGAGATTTTCAGGAAGGGAGTGAATACTGTCAAGAATGTCGTGG
ATAAGATGGAGGAGTAG
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Synonyms
Publications