NO02G02320, NO02G02320 (gene) Nannochloropsis oceanica

Overview
NameNO02G02320
Unique NameNO02G02320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length919
Alignment locationchr2:649861..650779 +

Link to JBrowse

Properties
Property NameValue
DescriptionMitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:649861..650779 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045039protein import into mitochondrial inner membrane
Vocabulary: Cellular Component
TermDefinition
GO:0042721TIM22 mitochondrial import inner membrane insertion complex
Homology
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BLAST of NO02G02320 vs. NCBI_GenBank
Match: EWM30420.1 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 [Nannochloropsis gaditana])

HSP 1 Score: 194.9 bits (494), Expect = 3.200e-46
Identity = 120/237 (50.63%), Postives = 140/237 (59.07%), Query Frame = 0 
Query:    1 MSWGRGSGSPGDRVKNTN-DWNEGGGQEEDVLGGGFEDTYD--SGVVSSGATDWGSTTTTDTTGWGSNEEGTEGFDDYADDRGPRAPPGQLGGXXXXXXXXXXXXXXXXXXEQGMMDQEKTRKRLGYGLCVAQFLINGVQGXXXXXXXXXXXXXXXXXXXXARGKPLVVHILYRARSSAFSFGVWIGSYSGAKCAFITMRNGKKDAFNAFLAGAVAGALPALASRNPRTILFSAMGS 235
            MSWGRG G      K T  DW+  G    DV G GF D +D  SG  SSG   W S  T D   WG++ EG   FD   D+RG +A P Q                     +QG M Q +TR+RLGYG CV  FL+NGVQ                     ARGK LV+++L RA+SSAFSFG WIGSYSG+KCAFIT+R+GK+DA NAFLAG VAGALPA+ASRNPRTILFSA+GS
Sbjct:    1 MSWGRGGGG-----KETEFDWSGDGNGGVDVQGDGFRDPFDGGSGADSSG---WNSNGTDDAMAWGTDNEGATDFDGMGDERGQQAQPRQ--SIRPQTQPSQAPWKGQKGPQQG-MSQAETRRRLGYGKCVVDFLVNGVQACALGSIIGVFSGYHEAYSAGARGKTLVLYVLSRAKSSAFSFGAWIGSYSGSKCAFITLRDGKRDALNAFLAGGVAGALPAIASRNPRTILFSALGS 226
The following BLAST results are available for this feature:
BLAST of NO02G02320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30420.13.200e-4650.63Mitochondrial inner membrane translocase subunit T... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006874NSK006874Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02320.1NO02G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574250gene_819Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100210g6gene235Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02320.1NO02G02320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02320 ID=NO02G02320|Name=NO02G02320|organism=Nannochloropsis oceanica|type=gene|length=919bp
ATGTCTTGGGGAAGAGGCAGCGGCAGCCCTGGAGACAGGGTAAAGAACAC
AAATGATTGGAATGAAGGCGGAGGGCAAGAAGAAGATGTCCTTGGAGGGG
GATTCGAGGACACGTACGACTCGGGCGTCGTAAGCTCAGGGGCAACCGAT
TGGGGCTCGACCACCACAACGGACACGACGGGATGGGGCAGCAACGAGGA
AGGCACCGAAGGCTTCGATGATTATGCCGACGATCGAGGTCCTAGGGCGC
CTCCGGGGCAATTGGGGGGTTCCCAGCAGCAGCAGCAACCGCCATCTCGG
TATCCTCCGCGGCAAGGGCAACCGGAGCAGGGGATGATGGACCAGGAGAA
GACCCGGAAGCGGCTGGGGTACGGGCTGTGCGTGGCCCAATTTCTGATCA
ATGGCGTGCAGGGCGGTATGATTGGATCGATATTTGGTGCATTCTCGGGA
GCTAGCGAGGGGTACTCAGCAGGAGCAAGGGGCAAGCCTCTGGTGGTGCA
TATCCTTTACAGGGCTCGCTCATCCGCCTTCTCGTTTGGCGTGTGGATAG
GCTCCTACAGTGGTGCCAAGTGCGCGTTTATTACCATGCGAAATGGGAAG
AAGGATGCGTTCAACGgtacgtgcatcttgtgagttctctcatcctcatt
ccgctcctccatctctctccctccctctcgtcctgcctcttacttgtgtc
ttcattcttctaagtttctatgccgcacgcacacccgcagCTTTCTTAGC
CGGGGCCGTGGCTGGGGCGTTACCCGCCTTAGCGAGCCGAAATCCCCGCA
CGATCCTTTTTTCGGCCATGGGCTCAGCTGGCTTGATGGGAATGATGGAG
AGCGTGGAGGGCATCTTCGGAGGGGCAGGGAAAGGTGGTGGTGGACTAGG
AGACGGTGGGGGAGACTGA
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protein sequence of NO02G02320.1

>NO02G02320.1-protein ID=NO02G02320.1-protein|Name=NO02G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MSWGRGSGSPGDRVKNTNDWNEGGGQEEDVLGGGFEDTYDSGVVSSGATD
WGSTTTTDTTGWGSNEEGTEGFDDYADDRGPRAPPGQLGGSQQQQQPPSR
YPPRQGQPEQGMMDQEKTRKRLGYGLCVAQFLINGVQGGMIGSIFGAFSG
ASEGYSAGARGKPLVVHILYRARSSAFSFGVWIGSYSGAKCAFITMRNGK
KDAFNAFLAGAVAGALPALASRNPRTILFSAMGSAGLMGMMESVEGIFGG
AGKGGGGLGDGGGD*
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Synonyms
Publications