NO02G02320.1, NO02G02320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02320.1
Unique NameNO02G02320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length795
Alignment locationchr2:649861..650779 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:649861..650779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02320.1 vs.
Match: EWM30420.1 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 [Nannochloropsis gaditana])

HSP 1 Score: 247.7 bits (631), Expect = 4.100e-62
Identity = 152/258 (58.91%), Postives = 178/258 (68.99%), Query Frame = 0 
Query:    1 MSWGRGSGSPGDRVKNTN-DWNEGGGQEEDVLGGGFEDTYD--SGVVSSGATDWGSTTTTDTTGWGSNEEGTEGFDDYADDRGPRAPPGQLGGSQQQQQPPSRYPPR-QGQPEQGMMDQEKTRKRLGYGLCVAQFLINGVQGGMIGSIFGAFSGASEGYSAGARGKPLVVHILYRARSSAFSFGVWIGSYSGAKCAFITMRNGKKDAFNAFLAGAVAGALPALASRNPRTILFSAMGSAGLMGMMESVEGIFGGAGKG 255
            MSWGRG G      K T  DW+  G    DV G GF D +D  SG  SSG   W S  T D   WG++ EG   FD   D+RG +A P Q   S + Q  PS+ P + Q  P+QGM  Q +TR+RLGYG CV  FL+NGVQ   +GSI G FSG  E YSAGARGK LV+++L RA+SSAFSFG WIGSYSG+KCAFIT+R+GK+DA NAFLAG VAGALPA+ASRNPRTILFSA+GSAG MG MES+EG+F G  KG
Sbjct:    1 MSWGRGGGG-----KETEFDWSGDGNGGVDVQGDGFRDPFDGGSGADSSG---WNSNGTDDAMAWGTDNEGATDFDGMGDERGQQAQPRQ---SIRPQTQPSQAPWKGQKGPQQGM-SQAETRRRLGYGKCVVDFLVNGVQACALGSIIGVFSGYHEAYSAGARGKTLVLYVLSRAKSSAFSFGAWIGSYSGSKCAFITLRDGKRDALNAFLAGGVAGALPAIASRNPRTILFSALGSAGFMGAMESLEGLFAGESKG 246
The following BLAST results are available for this feature:
BLAST of NO02G02320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30420.14.100e-6258.91Mitochondrial inner membrane translocase subunit T... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02320NO02G02320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02320.1NO02G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02320.1.cds1NO02G02320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02320.1.cds2NO02G02320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02320.1 ID=NO02G02320.1|Name=NO02G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=795bp
ATGTCTTGGGGAAGAGGCAGCGGCAGCCCTGGAGACAGGGTAAAGAACAC
AAATGATTGGAATGAAGGCGGAGGGCAAGAAGAAGATGTCCTTGGAGGGG
GATTCGAGGACACGTACGACTCGGGCGTCGTAAGCTCAGGGGCAACCGAT
TGGGGCTCGACCACCACAACGGACACGACGGGATGGGGCAGCAACGAGGA
AGGCACCGAAGGCTTCGATGATTATGCCGACGATCGAGGTCCTAGGGCGC
CTCCGGGGCAATTGGGGGGTTCCCAGCAGCAGCAGCAACCGCCATCTCGG
TATCCTCCGCGGCAAGGGCAACCGGAGCAGGGGATGATGGACCAGGAGAA
GACCCGGAAGCGGCTGGGGTACGGGCTGTGCGTGGCCCAATTTCTGATCA
ATGGCGTGCAGGGCGGTATGATTGGATCGATATTTGGTGCATTCTCGGGA
GCTAGCGAGGGGTACTCAGCAGGAGCAAGGGGCAAGCCTCTGGTGGTGCA
TATCCTTTACAGGGCTCGCTCATCCGCCTTCTCGTTTGGCGTGTGGATAG
GCTCCTACAGTGGTGCCAAGTGCGCGTTTATTACCATGCGAAATGGGAAG
AAGGATGCGTTCAACGCTTTCTTAGCCGGGGCCGTGGCTGGGGCGTTACC
CGCCTTAGCGAGCCGAAATCCCCGCACGATCCTTTTTTCGGCCATGGGCT
CAGCTGGCTTGATGGGAATGATGGAGAGCGTGGAGGGCATCTTCGGAGGG
GCAGGGAAAGGTGGTGGTGGACTAGGAGACGGTGGGGGAGACTGA
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protein sequence of NO02G02320.1

>NO02G02320.1-protein ID=NO02G02320.1-protein|Name=NO02G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MSWGRGSGSPGDRVKNTNDWNEGGGQEEDVLGGGFEDTYDSGVVSSGATD
WGSTTTTDTTGWGSNEEGTEGFDDYADDRGPRAPPGQLGGSQQQQQPPSR
YPPRQGQPEQGMMDQEKTRKRLGYGLCVAQFLINGVQGGMIGSIFGAFSG
ASEGYSAGARGKPLVVHILYRARSSAFSFGVWIGSYSGAKCAFITMRNGK
KDAFNAFLAGAVAGALPALASRNPRTILFSAMGSAGLMGMMESVEGIFGG
AGKGGGGLGDGGGD*
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mRNA from alignment at chr2:649861..650779+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02320.1 ID=NO02G02320.1|Name=NO02G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=919bp|location=Sequence derived from alignment at chr2:649861..650779+ (Nannochloropsis oceanica)
ATGTCTTGGGGAAGAGGCAGCGGCAGCCCTGGAGACAGGGTAAAGAACAC
AAATGATTGGAATGAAGGCGGAGGGCAAGAAGAAGATGTCCTTGGAGGGG
GATTCGAGGACACGTACGACTCGGGCGTCGTAAGCTCAGGGGCAACCGAT
TGGGGCTCGACCACCACAACGGACACGACGGGATGGGGCAGCAACGAGGA
AGGCACCGAAGGCTTCGATGATTATGCCGACGATCGAGGTCCTAGGGCGC
CTCCGGGGCAATTGGGGGGTTCCCAGCAGCAGCAGCAACCGCCATCTCGG
TATCCTCCGCGGCAAGGGCAACCGGAGCAGGGGATGATGGACCAGGAGAA
GACCCGGAAGCGGCTGGGGTACGGGCTGTGCGTGGCCCAATTTCTGATCA
ATGGCGTGCAGGGCGGTATGATTGGATCGATATTTGGTGCATTCTCGGGA
GCTAGCGAGGGGTACTCAGCAGGAGCAAGGGGCAAGCCTCTGGTGGTGCA
TATCCTTTACAGGGCTCGCTCATCCGCCTTCTCGTTTGGCGTGTGGATAG
GCTCCTACAGTGGTGCCAAGTGCGCGTTTATTACCATGCGAAATGGGAAG
AAGGATGCGTTCAACGGTACGTGCATCTTGTGAGTTCTCTCATCCTCATT
CCGCTCCTCCATCTCTCTCCCTCCCTCTCGTCCTGCCTCTTACTTGTGTC
TTCATTCTTCTAAGTTTCTATGCCGCACGCACACCCGCAGCTTTCTTAGC
CGGGGCCGTGGCTGGGGCGTTACCCGCCTTAGCGAGCCGAAATCCCCGCA
CGATCCTTTTTTCGGCCATGGGCTCAGCTGGCTTGATGGGAATGATGGAG
AGCGTGGAGGGCATCTTCGGAGGGGCAGGGAAAGGTGGTGGTGGACTAGG
AGACGGTGGGGGAGACTGA
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Coding sequence (CDS) from alignment at chr2:649861..650779+

>NO02G02320.1 ID=NO02G02320.1|Name=NO02G02320.1|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at chr2:649861..650779+ (Nannochloropsis oceanica)
ATGTCTTGGGGAAGAGGCAGCGGCAGCCCTGGAGACAGGGTAAAGAACAC
AAATGATTGGAATGAAGGCGGAGGGCAAGAAGAAGATGTCCTTGGAGGGG
GATTCGAGGACACGTACGACTCGGGCGTCGTAAGCTCAGGGGCAACCGAT
TGGGGCTCGACCACCACAACGGACACGACGGGATGGGGCAGCAACGAGGA
AGGCACCGAAGGCTTCGATGATTATGCCGACGATCGAGGTCCTAGGGCGC
CTCCGGGGCAATTGGGGGGTTCCCAGCAGCAGCAGCAACCGCCATCTCGG
TATCCTCCGCGGCAAGGGCAACCGGAGCAGGGGATGATGGACCAGGAGAA
GACCCGGAAGCGGCTGGGGTACGGGCTGTGCGTGGCCCAATTTCTGATCA
ATGGCGTGCAGGGCGGTATGATTGGATCGATATTTGGTGCATTCTCGGGA
GCTAGCGAGGGGTACTCAGCAGGAGCAAGGGGCAAGCCTCTGGTGGTGCA
TATCCTTTACAGGGCTCGCTCATCCGCCTTCTCGTTTGGCGTGTGGATAG
GCTCCTACAGTGGTGCCAAGTGCGCGTTTATTACCATGCGAAATGGGAAG
AAGGATGCGTTCAACGCTTTCTTAGCCGGGGCCGTGGCTGGGGCGTTACC
CGCCTTAGCGAGCCGAAATCCCCGCACGATCCTTTTTTCGGCCATGGGCT
CAGCTGGCTTGATGGGAATGATGGAGAGCGTGGAGGGCATCTTCGGAGGG
GCAGGGAAAGGTGGTGGTGGACTAGGAGACGGTGGGGGAGACTGA
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Synonyms
Publications