NO02G02110, NO02G02110 (gene) Nannochloropsis oceanica

Overview
NameNO02G02110
Unique NameNO02G02110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length717
Alignment locationchr2:599775..600491 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:599775..600491 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G02110 vs. NCBI_GenBank
Match: EWM30485.1 (hypothetical protein Naga_100013g6 [Nannochloropsis gaditana])

HSP 1 Score: 198.7 bits (504), Expect = 1.500e-47
Identity = 106/178 (59.55%), Postives = 136/178 (76.40%), Query Frame = 0 
Query:    1 MNRLPMPPGLGSNGEDRPSKETLQKAARVRIDVMAGSMRGLGFGLIIGAGGFPIFKRYMPATWRTTKHHVFIALATSALGSFIGSATATRNSLEHVVSGMERVVPPGQRAADEAFQRRQKAMATRDQLARGGQRSGGEGFWVLPPNNSQAVGEVDARATGTPPGAEGRPSGRRSTPPS 179
            MNRLP+  G GS+ ++RPSKETL+KAARVRIDV+AGS+RGLG+GL++GAGGFP+ KR++P TW+ +KHHVFIALATSALGSF+GSATATRNSLEHVVSG++RVVPP  +AA++AF+RR+KA+AT++      Q     GFW LPP     +G+   R +G    AE    G+  T  S
Sbjct:    1 MNRLPI-RGSGSSEDERPSKETLKKAARVRIDVLAGSLRGLGYGLLLGAGGFPLLKRFLPITWQGSKHHVFIALATSALGSFVGSATATRNSLEHVVSGLQRVVPPEVQAAEDAFRRRRKALATKEN-TNISQNEREGGFWGLPPEPGNGLGDTRYRQSGP---AENLRHGKPPTTSS 173
The following BLAST results are available for this feature:
BLAST of NO02G02110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30485.11.500e-4759.55hypothetical protein Naga_100013g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL020nonsL020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR005ngnoR005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006824NSK006824Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02110.1NO02G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574179gene_797Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g6gene200Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02110.1NO02G02110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02110 ID=NO02G02110|Name=NO02G02110|organism=Nannochloropsis oceanica|type=gene|length=717bp
TCCCCACCCACCTAACGCCCGCAGCAACGCTACCACAGACAACACACAAC
ACACACAACACAAGCTCATGAATCGACTACCCATGCCTCCTGGTCTGGGC
TCCAATGGGGAGGACCGGCCGTCCAAGGAAACGCTGCAAAAGGCGGCTCG
AGTACGAATCGACGTCATGGCTGGGTCCATGCGCGGCCTGGGATTTGGAT
TGATCATTGGAGCAGGAGGGTTTCCAATATTCAAGCGCTACATGCCGGCC
ACGTGGCGGACCACTAAACACCATGTCTTCATTGCCCTGGCGACCAGCGC
GCTAGGAAGCTTTATTGGTTCTGCGACGGCCACGCGCAATTCCCTAGAGC
ACGTCGTCTCGGGCATGGAGCGAGTCGTACCGCCGGGGCAGCGGGCAGCA
GACGAAGCTTTTCAACGGCGTCAAAAAGCTATGGCGACGAGAGACCAATT
GGCTAGAGGTGGACAGCGTTCGGGAGGGGAAGGATTTTGGGTGTTGCCAC
CTAACAACAGCCAGGCAGTGGGTGAGGTGGACGCTCGGGCGACTGGAACT
CCTCCGGGAGCAGAGGGAAGACCATCAGGCCGCCGATCCACACCACCTTC
CGCAACTCGATCATTCTAAATGTATGAAGTACGCGATATTTTAGGGTTAA
AGACATTTAGTCAAAGATATATGTACAAGAAAATGTAAGCATGATATATA
ATATATAACCGCCGCCA
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protein sequence of NO02G02110.1

>NO02G02110.1-protein ID=NO02G02110.1-protein|Name=NO02G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MNRLPMPPGLGSNGEDRPSKETLQKAARVRIDVMAGSMRGLGFGLIIGAG
GFPIFKRYMPATWRTTKHHVFIALATSALGSFIGSATATRNSLEHVVSGM
ERVVPPGQRAADEAFQRRQKAMATRDQLARGGQRSGGEGFWVLPPNNSQA
VGEVDARATGTPPGAEGRPSGRRSTPPSATRSF*
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Synonyms
Publications