NO02G02110.1, NO02G02110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02110.1
Unique NameNO02G02110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length717
Alignment locationchr2:599775..600491 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:599775..600491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02110.1 vs.
Match: EWM30485.1 (hypothetical protein Naga_100013g6 [Nannochloropsis gaditana])

HSP 1 Score: 198.7 bits (504), Expect = 1.500e-47
Identity = 106/178 (59.55%), Postives = 136/178 (76.40%), Query Frame = 0 
Query:    1 MNRLPMPPGLGSNGEDRPSKETLQKAARVRIDVMAGSMRGLGFGLIIGAGGFPIFKRYMPATWRTTKHHVFIALATSALGSFIGSATATRNSLEHVVSGMERVVPPGQRAADEAFQRRQKAMATRDQLARGGQRSGGEGFWVLPPNNSQAVGEVDARATGTPPGAEGRPSGRRSTPPS 179
            MNRLP+  G GS+ ++RPSKETL+KAARVRIDV+AGS+RGLG+GL++GAGGFP+ KR++P TW+ +KHHVFIALATSALGSF+GSATATRNSLEHVVSG++RVVPP  +AA++AF+RR+KA+AT++      Q     GFW LPP     +G+   R +G    AE    G+  T  S
Sbjct:    1 MNRLPIR-GSGSSEDERPSKETLKKAARVRIDVLAGSLRGLGYGLLLGAGGFPLLKRFLPITWQGSKHHVFIALATSALGSFVGSATATRNSLEHVVSGLQRVVPPEVQAAEDAFRRRRKALATKEN-TNISQNEREGGFWGLPPEPGNGLGDTRYRQSGP---AENLRHGKPPTTSS 173
The following BLAST results are available for this feature:
BLAST of NO02G02110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30485.11.500e-4759.55hypothetical protein Naga_100013g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02110NO02G02110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02110.1NO02G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02110.1.cds1NO02G02110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02110.1 ID=NO02G02110.1|Name=NO02G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=717bp
TCCCCACCCACCTAACGCCCGCAGCAACGCTACCACAGACAACACACAAC
ACACACAACACAAGCTCATGAATCGACTACCCATGCCTCCTGGTCTGGGC
TCCAATGGGGAGGACCGGCCGTCCAAGGAAACGCTGCAAAAGGCGGCTCG
AGTACGAATCGACGTCATGGCTGGGTCCATGCGCGGCCTGGGATTTGGAT
TGATCATTGGAGCAGGAGGGTTTCCAATATTCAAGCGCTACATGCCGGCC
ACGTGGCGGACCACTAAACACCATGTCTTCATTGCCCTGGCGACCAGCGC
GCTAGGAAGCTTTATTGGTTCTGCGACGGCCACGCGCAATTCCCTAGAGC
ACGTCGTCTCGGGCATGGAGCGAGTCGTACCGCCGGGGCAGCGGGCAGCA
GACGAAGCTTTTCAACGGCGTCAAAAAGCTATGGCGACGAGAGACCAATT
GGCTAGAGGTGGACAGCGTTCGGGAGGGGAAGGATTTTGGGTGTTGCCAC
CTAACAACAGCCAGGCAGTGGGTGAGGTGGACGCTCGGGCGACTGGAACT
CCTCCGGGAGCAGAGGGAAGACCATCAGGCCGCCGATCCACACCACCTTC
CGCAACTCGATCATTCTAAATGTATGAAGTACGCGATATTTTAGGGTTAA
AGACATTTAGTCAAAGATATATGTACAAGAAAATGTAAGCATGATATATA
ATATATAACCGCCGCCA
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protein sequence of NO02G02110.1

>NO02G02110.1-protein ID=NO02G02110.1-protein|Name=NO02G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MNRLPMPPGLGSNGEDRPSKETLQKAARVRIDVMAGSMRGLGFGLIIGAG
GFPIFKRYMPATWRTTKHHVFIALATSALGSFIGSATATRNSLEHVVSGM
ERVVPPGQRAADEAFQRRQKAMATRDQLARGGQRSGGEGFWVLPPNNSQA
VGEVDARATGTPPGAEGRPSGRRSTPPSATRSF*
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mRNA from alignment at chr2:599775..600491+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02110.1 ID=NO02G02110.1|Name=NO02G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=717bp|location=Sequence derived from alignment at chr2:599775..600491+ (Nannochloropsis oceanica)
TCCCCACCCACCTAACGCCCGCAGCAACGCTACCACAGACAACACACAAC
ACACACAACACAAGCTCATGAATCGACTACCCATGCCTCCTGGTCTGGGC
TCCAATGGGGAGGACCGGCCGTCCAAGGAAACGCTGCAAAAGGCGGCTCG
AGTACGAATCGACGTCATGGCTGGGTCCATGCGCGGCCTGGGATTTGGAT
TGATCATTGGAGCAGGAGGGTTTCCAATATTCAAGCGCTACATGCCGGCC
ACGTGGCGGACCACTAAACACCATGTCTTCATTGCCCTGGCGACCAGCGC
GCTAGGAAGCTTTATTGGTTCTGCGACGGCCACGCGCAATTCCCTAGAGC
ACGTCGTCTCGGGCATGGAGCGAGTCGTACCGCCGGGGCAGCGGGCAGCA
GACGAAGCTTTTCAACGGCGTCAAAAAGCTATGGCGACGAGAGACCAATT
GGCTAGAGGTGGACAGCGTTCGGGAGGGGAAGGATTTTGGGTGTTGCCAC
CTAACAACAGCCAGGCAGTGGGTGAGGTGGACGCTCGGGCGACTGGAACT
CCTCCGGGAGCAGAGGGAAGACCATCAGGCCGCCGATCCACACCACCTTC
CGCAACTCGATCATTCTAAATGTATGAAGTACGCGATATTTTAGGGTTAA
AGACATTTAGTCAAAGATATATGTACAAGAAAATGTAAGCATGATATATA
ATATATAACCGCCGCCA
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Coding sequence (CDS) from alignment at chr2:599775..600491+

>NO02G02110.1 ID=NO02G02110.1|Name=NO02G02110.1|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at chr2:599775..600491+ (Nannochloropsis oceanica)
ATGAATCGACTACCCATGCCTCCTGGTCTGGGCTCCAATGGGGAGGACCG
GCCGTCCAAGGAAACGCTGCAAAAGGCGGCTCGAGTACGAATCGACGTCA
TGGCTGGGTCCATGCGCGGCCTGGGATTTGGATTGATCATTGGAGCAGGA
GGGTTTCCAATATTCAAGCGCTACATGCCGGCCACGTGGCGGACCACTAA
ACACCATGTCTTCATTGCCCTGGCGACCAGCGCGCTAGGAAGCTTTATTG
GTTCTGCGACGGCCACGCGCAATTCCCTAGAGCACGTCGTCTCGGGCATG
GAGCGAGTCGTACCGCCGGGGCAGCGGGCAGCAGACGAAGCTTTTCAACG
GCGTCAAAAAGCTATGGCGACGAGAGACCAATTGGCTAGAGGTGGACAGC
GTTCGGGAGGGGAAGGATTTTGGGTGTTGCCACCTAACAACAGCCAGGCA
GTGGGTGAGGTGGACGCTCGGGCGACTGGAACTCCTCCGGGAGCAGAGGG
AAGACCATCAGGCCGCCGATCCACACCACCTTCCGCAACTCGATCATTCT
AA
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Synonyms
Publications