NO02G02070, NO02G02070 (gene) Nannochloropsis oceanica

Overview
NameNO02G02070
Unique NameNO02G02070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2487
Alignment locationchr2:592116..594602 -

Link to JBrowse

Properties
Property NameValue
DescriptionCysteinyl-trna synthetase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:592116..594602 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
GO:0006423cysteinyl-tRNA aminoacylation
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004812aminoacyl-tRNA ligase activity
GO:0000166nucleotide binding
GO:0004817cysteine-tRNA ligase activity
GO:0005524ATP binding
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR009080tRNAsynth_1a_anticodon-bd
IPR032678tRNA-synt_1_cat_dom
IPR015273Cys-tRNA-synt_Ia_DALR
IPR024909Cys-tRNA/MSH_ligase
Homology
BLAST of NO02G02070 vs. NCBI_GenBank
Match: EWM30518.1 (cysteinyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 714.1 bits (1842), Expect = 3.100e-202
Identity = 350/453 (77.26%), Postives = 396/453 (87.42%), Query Frame = 0
Query:   74 STAMAADNNALSRKLLTSDIPFQLYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGK-EDEGG---FGMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREVLVALERMDEVLGIFYDPPSVEG 523
            S+  A+ + A SR  LT+DIPFQLYNTASRKKEPFKT +P KVSFYSCGPTIYD+AHIGNFRAFLTYDVLKRWLLYSGY VEH+CNLTDVDDKIIKRMARD +SLPELT+K+A+VFFEDL+ALN++PAS YPRATEHI DIV MVQ L++RG+AYESQGS YFRV++FP+YG LA+LDFSGME GA +GGGI+DADEYVA+KGDAKDFALWKAYK EDGPVFWETALGKGRPGWHIECSAMAR +LG TVD+HAGGVDLVFPHHENE+AQSE A+ G+RFC CWVHNGFVNVENEKMSKSKGNFLTL+GSL+ GL++RAFRYLVVTSQYR PLNFN EGL GA+KT++RLDK++  L  V  +GK  +EGG     M+ VI+KA+ GFEAGMADDLNTPRAAAALFTLVK  EKALK   P L PS AR VL  LE+MD VLGIFY+PP +EG
Sbjct:   69 SSISASGSTARSRNFLTNDIPFQLYNTASRKKEPFKTGQPGKVSFYSCGPTIYDFAHIGNFRAFLTYDVLKRWLLYSGYDVEHVCNLTDVDDKIIKRMARDGLSLPELTDKFARVFFEDLQALNVLPASHYPRATEHIQDIVSMVQALVDRGYAYESQGSFYFRVSRFPSYGSLAKLDFSGMEMGAAKGGGISDADEYVADKGDAKDFALWKAYKAEDGPVFWETALGKGRPGWHIECSAMARRFLGPTVDLHAGGVDLVFPHHENEIAQSEGAS-GERFCRCWVHNGFVNVENEKMSKSKGNFLTLRGSLETGLDVRAFRYLVVTSQYRMPLNFNTEGLAGARKTILRLDKVKAALTRVAREGKGAEEGGEIDEEMQGVIDKAVAGFEAGMADDLNTPRAAAALFTLVKATEKALKGDSPRLRPSGARLVLATLEQMDAVLGIFYEPPLMEG 520          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: CBJ26372.1 (Cysteinyl-tRNA Synthetase [Ectocarpus siliculosus])

HSP 1 Score: 572.4 bits (1474), Expect = 1.400e-159
Identity = 287/449 (63.92%), Postives = 339/449 (75.50%), Query Frame = 0
Query:   97 LYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFG------MKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALK----------------STPP--FLPPSEAREVLVALERMDEVLGIFYDPPSVE 522
            L+NT  R KE F+ ++  +V FYSCGPT+YD AHIGNFRAFLTYDVLKRWLLY G+ V+H+CNLTDVDDKII RMARD +SL ELT KYA++FF+DL++LNIVPASRYPRATEHIDDIV MVQ L+++  AY+  GSVYFRV+K   YG LA LD SGME GAGEGGG+NDA E+ +EK DAKDFALWK YK EDG VFW+T LGKGRPGWHIECSAMAR +LG T+DVHAGG+DLVFPHHENEVAQSE    GK FC CWVHN FVNV+ EKMSKSKGNFLTLK +L   L++RAFRYLVV+SQYR+ L F+ + L+ AK T+ RLDKLR  L      G E+E G        + +V+ K+L+GF+AGM DDLNTPRAAA+LF +VK  E ALK                 +PP   LP  +A+ +L AL+RMD V GIFY+P   E
Sbjct:   21 LFNTEGRTKERFRPQDRRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGFEVDHVCNLTDVDDKIIARMARDGVSLEELTGKYAKLFFDDLESLNIVPASRYPRATEHIDDIVEMVQGLIDKELAYKVNGSVYFRVSKHGKYGTLACLDTSGMEDGAGEGGGVNDAAEFESEKEDAKDFALWKGYKPEDGEVFWDTLLGKGRPGWHIECSAMARKFLGDTLDVHAGGIDLVFPHHENEVAQSEGFT-GKPFCRCWVHNAFVNVDGEKMSKSKGNFLTLKSTLATALDVRAFRYLVVSSQYRTTLGFSMKSLQSAKNTLRRLDKLRVALEAAAAAGNEEERGDASEVSRELLEVVPKSLEGFDAGMNDDLNTPRAAASLFAVVKAGENALKRVRSANADGGDTAAAGGSPPQSLLPQVDAKYLLAALDRMDSVFGIFYEPAGYE 468          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: XP_005819331.1 (hypothetical protein GUITHDRAFT_82387 [Guillardia theta CCMP2712] >EKX32351.1 hypothetical protein GUITHDRAFT_82387 [Guillardia theta CCMP2712])

HSP 1 Score: 498.8 bits (1283), Expect = 2.000e-137
Identity = 250/403 (62.03%), Postives = 295/403 (73.20%), Query Frame = 0
Query:   95 FQLYNTASRKKEPFK--TEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGK--------EDEGGFGMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKS 488
            F++YNT SR KE F+   E+   V  Y+CGPTIYD+AHIGNFRAFLTYDVLKRWLLY GY V+HICNLTDVDDKII+RM RD + L ELTEK+A  FF+DLK LNI+PA +YPRATEHIDDIV M+  L+++G AYE  GS YF V+ FP YGKLARLDF  M  GA EGGGI D + +  EK  +KDFALWKAYK EDG V WET L KGRPGWHIECSAM+R YLG + D+HAGGVDL FPHHENE+AQSE A  G ++C  WVHNGFVN+ NEKMSKS GNFLTL+ + K   + RAFRYLVV+SQYR+ LNF  + L+GA+ T+ RLDK R+   +  E G+        E E       V + A +  + GM DDLNTPRA AALFT +K  EK L +
Sbjct:   22 FKIYNTLSRDKETFEPMCEDGKTVKMYTCGPTIYDFAHIGNFRAFLTYDVLKRWLLYCGYDVDHICNLTDVDDKIIQRMKRDNVGLKELTEKFADAFFDDLKRLNIIPARKYPRATEHIDDIVEMINGLVQKGNAYEKDGSYYFDVSSFPDYGKLARLDFDNMMDGASEGGGITDREGF--EKKSSKDFALWKAYKPEDGEVTWETKLSKGRPGWHIECSAMSRRYLGDSFDIHAGGVDLTFPHHENEIAQSE-AYCGCQYCRYWVHNGFVNINNEKMSKSLGNFLTLREAFKDPNDCRAFRYLVVSSQYRAALNFAPDVLQGARNTLKRLDKRRREKEEAAEGGRWEDNRMEEEAEERAESLQVEKSAARSLDGGMMDDLNTPRACAALFTFIKSTEKLLNT 421          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: EJK77487.1 (hypothetical protein THAOC_00680, partial [Thalassiosira oceanica])

HSP 1 Score: 463.8 bits (1192), Expect = 7.200e-127
Identity = 243/452 (53.76%), Postives = 310/452 (68.58%), Query Frame = 0
Query:   97 LYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYES-QGSVYFRVNKFPAYG-KLARLDFSGMERGA-GEGGGIN------DADEYVAEKGDAKDFALWKAYKEE--------DGPVFWETA----LGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFGMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALK-----STPPFLPPSEAREVLVALERMDEVLGIFYDPPSVEG 523
            LYN+ SR K PF+   P  VS Y+CGPT+YDYAH+GNFRAFLTYDVLKR L Y GY+V+HICNLTDVDDKIIKR  R+ +SL +LT KY+Q+FF+DL+ALNI+ A  YPRAT++ID++  ++ +L   G +Y+S +GS YF V+K   YG  L +LD   M++GA  E GG        DADEY A+K   +DF LWKAYK E        D  V  E      +GKGRPGWH+ECSAMAR YLG T+D+HAGGVDL FPHHENE+AQSE AN    FCNCWVHNGFVN+ NEKMSKSKGNFLTL+ +     ++RA+RYLVV+SQYR+PL+F  E L  AK  + RLD+++  +++ ++  +   G   M  ++   L  FEA +ADDL+ PRA+A+LF++VK AEK  K          L     R  L A+ +MD+V GIFYD P+V G
Sbjct:   73 LYNSLSRTKLPFEPASPPYVSMYTCGPTVYDYAHVGNFRAFLTYDVLKRALTYLGYNVDHICNLTDVDDKIIKRCDRENVSLMDLTTKYSQLFFDDLEALNIIKAREYPRATDNIDEMAKLIIDLERNGLSYQSEEGSWYFSVDKKDGYGTNLVQLDVGQMKKGASAETGGAGAQRGNLDADEYDADKEGVRDFCLWKAYKPEFDRDDATWDPVVTLEDGATKNIGKGRPGWHLECSAMARRYLGPTIDLHAGGVDLKFPHHENEIAQSEGANCAP-FCNCWVHNGFVNIGNEKMSKSKGNFLTLRTACPSADDVRAYRYLVVSSQYRNPLSFTDEALSAAKGALKRLDRVKSNIVEALDANEVTGGESEMTTLVGSQLANFEAAIADDLSMPRASASLFSIVKAAEKEFKRFAKSDDDGALDLGGLRCALDAINKMDQVFGIFYDVPAVNG 523          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: XP_005715284.1 (Cysteinyl-tRNA Synthetase [Chondrus crispus] >CDF35465.1 Cysteinyl-tRNA Synthetase [Chondrus crispus])

HSP 1 Score: 451.1 bits (1159), Expect = 4.800e-123
Identity = 233/423 (55.08%), Postives = 281/423 (66.43%), Query Frame = 0
Query:   97 LYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARLD--FSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFGMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREVLVALERMDEVLGIFYDP 518
            LYNT SR KE F T EP  V FYSCGPT+YDYAHIGNFRAFLTYDV+KRWLL  GY ++H+ NLTD+DDKII+++     SL ELT KYA  FF DL  LN++PA +YPRATEHI +I   V  L++RG+AYE  GS YF V KF +YG+LA+L+                             +DFALWK+YK  D  +FW++ LGKGRPGWHIEC+ MA  YLG  +D+H GG+DLVFPHHENE+AQSEA   G+ F   WVHNGFVN+ NEKMSKS GNF TL+   K   + RAFRYLVV+SQYRS L F  + L+ A+ TV RLD LRKRL    E    D G   + +VI KA + F  GM DD NTPRAAAA+F++V  AEK LK+    +    A   L  L+ MD V GIFY+P
Sbjct:   22 LYNTLSRTKEAFTTVEPGVVRFYSCGPTVYDYAHIGNFRAFLTYDVIKRWLLCRGYDIKHVMNLTDIDDKIIRKVRELGCSLDELTNKYADAFFADLDLLNVIPAQQYPRATEHIKEIEETVGGLVKRGYAYERDGSTYFSVAKFESYGRLAQLEKRXXXXXXXXXXXXXXXXXXXXXXXXXXMRDFALWKSYKTNDAGIFWDSPLGKGRPGWHIECTCMAIKYLGPELDIHGGGIDLVFPHHENELAQSEALT-GRPFSRFWVHNGFVNINNEKMSKSLGNFQTLRDIAKKPDDARAFRYLVVSSQYRSALAFTDQSLKSARSTVKRLDALRKRL----ESAGGDGGEEDIAEVIAKAKENFARGMDDDFNTPRAAAAMFSVVNAAEKMLKAKK--MNEKAAGSCLKCLDDMDRVFGIFYNP 437          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: XP_005535555.1 (cysteine--tRNA ligase, chloroplast or mitochondrial [Cyanidioschyzon merolae strain 10D] >BAM79269.1 cysteine--tRNA ligase, chloroplast or mitochondrial [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 438.0 bits (1125), Expect = 4.200e-119
Identity = 219/424 (51.65%), Postives = 283/424 (66.75%), Query Frame = 0
Query:   98 YNTASRKKEPFKTEE-PSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEG---GFGMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREVLVALERMDEVLGIFYDP 518
            YNT SR+KEPF+T      V FYSCGPT+YDYAHIGNFRAFLTYD++KRWL++ GY V H+ N+TDVDDKII+R  R++    ++T ++A  FF+DLKALNI+PA  YP AT HIDD+  +V+EL+ RGFAY+   SVY+ V +F  YG LAR++F  +    GE     DA  + A K D +DF LWK +K +DG V W+T +G GRPGWH EC+AMA  YLG +VD+HAGG DLVFPHHENE+AQ EA   G  F   W+HNGFVN+  EKMSKS GN++TL+  ++  L+ RAFRY V+TS YR PLNF  + L  A  T+ RLD  RK ++D+        G     G++   E  L+ F   MADDLNT RAAA +F  ++  E   +     L P++A  +L  L  MD V G+FY+P
Sbjct:   74 YNTLSRRKEPFETSSADGVVRFYSCGPTVYDYAHIGNFRAFLTYDLVKRWLMFCGYKVRHVMNITDVDDKIIQRSQREQRRAEDITRQFAAEFFQDLKALNIIPADAYPCATAHIDDMADLVRELLSRGFAYKLGDSVYYSVERFARYGTLARINFESLLSSNGEE---EDAGPHTALKRDPRDFVLWKGHKPDDGDVKWDTPIGCGRPGWHTECAAMAMKYLGSSVDIHAGGSDLVFPHHENEIAQCEAVT-GTMFARFWIHNGFVNINGEKMSKSLGNYITLRDLVRDPLDARAFRYAVITSLYRMPLNFTDDTLGAAATTLRRLDLFRKSIIDLERSEASTPGQKADQGLRASCEAYLRDFCDHMADDLNTARAAAVIFEALRHFEALRRDAR--LRPADASLILGMLREMDRVFGVFYEP 491          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: XP_002288148.1 (probable cysteinyl-trna synthetase, partial [Thalassiosira pseudonana CCMP1335] >EED93584.1 probable cysteinyl-trna synthetase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 434.9 bits (1117), Expect = 3.600e-118
Identity = 232/438 (52.97%), Postives = 290/438 (66.21%), Query Frame = 0
Query:   97 LYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYES-QGSVYFRVNKFPAYG-KLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEE--DGPVFWE-----TALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFGMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALK---------STPPFLPPSEAREVLVALERMDEVLGIFYD 517
            LYN+ +R K PF       VS Y+CGPT+YD AH+GNFRAFLTYDVLKR LLY GY V+H+CNLTDVDDKIIKR  R+ +SL ELT K+   FFEDL+ALNI+ A  YPRATEHID++  ++ +L   G AY+S +GS YF V+K   YG +L +LD   ++ GA    G  DADEY  EK   +DF LWKAYK E       W+       +G+GRPGWH+ECSAMAR YLG T+D+HAGGVDL FPHHENE+AQSE AN    FCNCW+HNGFVN+ +EKMSKSKGNFLTL+G+     ++RA+RYLVV+SQYR+PL+F    L  AK  + RLDK++  L + +E   ++ G     D   + L  FE  +ADDL+ PRA+A LF++VK AEK  K            P L     + V  AL+ MD V  I  D
Sbjct:    3 LYNSLTRSKTPFTPLRSPSVSMYTCGPTVYDSAHVGNFRAFLTYDVLKRVLLYLGYDVDHVCNLTDVDDKIIKRCEREGVSLIELTRKFEGKFFEDLEALNIIKAREYPRATEHIDEMAKLILDLERNGLAYQSEEGSWYFSVSKKEGYGTRLVQLDPEQLKIGASAQRGSLDADEYDTEKEGVRDFCLWKAYKPEFDREDATWDPDGVTRNIGRGRPGWHLECSAMARKYLGDTIDLHAGGVDLKFPHHENEIAQSEGANCAP-FCNCWIHNGFVNIGDEKMSKSKGNFLTLRGACPTADDVRAYRYLVVSSQYRNPLSFTDAALGAAKGALKRLDKVKTLLDEALESSNDNSG-----DASAEKLTNFEVAIADDLSMPRASACLFSIVKAAEKEFKRVDKAKDEDDNAPPLDLVGLQRVRDALDLMDNVFEIPQD 434          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: CEL93242.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 427.6 bits (1098), Expect = 5.700e-116
Identity = 238/504 (47.22%), Postives = 314/504 (62.30%), Query Frame = 0
Query:   55 LYSFIRYPPRIATSRASASSTAMAADNNALSRKLLTSDIPFQLYNTASRKKEPFKTEEPSK----------VSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQ-------------GSVYFRVNKFPAYGKLA-RLDFSGMERGAGE-GGGINDADEYVAE---------KGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDV-------VEKGKEDEGGFGMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREVLVALERMDEVLGIFYDP 518
            L SF R P   ++SR   S+ + ++  +A        D  F+L++T  R K  F    PS           V FYSCGPT+YD AHIGNFRAFLTYD+LKR+L+Y GY+V H+CNLTDVDDKII+RM  + +S  ELT  Y Q+FF+D+KALN++PA+ YPRA+++I  +  M+Q L++ G AY +Q              SVYF V+K   YG L  R   SG+  G GE  G  ++  E VA          K +A+DFALWKAYKEEDG V+W +  G+GRPGWHIECSAMA+  LG T+D+HAGG+DL+FPHHENE+AQSE A+ G+ FC  WVHNGFVN+  EKMSKSK NFLTL+       ++RAFR+LVV S YR PLNF+   L+ A+ +V RLD  R+RL          ++     +    + +   + +  FEA + DDLNTPRA AA+F L+   E+AL+     L     + V  AL+RMD V G++YDP
Sbjct:   10 LISF-RGPQHPSSSRGGLSTVSGSSIGSA--------DRRFRLFDTGERTKRSFDAGMPSSSAAPLDSERVVRFYSCGPTVYDAAHIGNFRAFLTYDLLKRFLIYLGYTVVHVCNLTDVDDKIIQRMRDEGVSRTELTNTYTQLFFQDIKALNVLPATHYPRASDYIPQMQAMIQTLIDNGLAYTAQEQPRQQGAIELPAASVYFNVSKCERYGVLTDRRFLSGIRAGGGERDGSASEESEEVASDHADAAGTGKVEAEDFALWKAYKEEDGDVWWNSPWGRGRPGWHIECSAMAKALLGDTIDIHAGGIDLIFPHHENEIAQSEGAS-GQPFCRYWVHNGFVNINQEKMSKSKRNFLTLRQCCPTKDDVRAFRFLVVGSNYRRPLNFSAAALQSARNSVRRLDAFRRRLKAAAAQEAPHLQDLPSGDWNAQLINASSECVNDFEAHLLDDLNTPRAFAAMFKLIATCERALQECQGALLGEGLKGVSSALDRMDSVFGLWYDP 503          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: ETX02520.1 (cysteinyl-tRNA synthetase [Candidatus Entotheonella factor])

HSP 1 Score: 401.0 bits (1029), Expect = 5.800e-108
Identity = 197/426 (46.24%), Postives = 278/426 (65.26%), Query Frame = 0
Query:   96 QLYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFGMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREVLVALERMDEVLGIFYDPPSVE 522
            + YNT +R+KE F   EP KV+ Y+CGPT+Y+Y HIGN+RA++  D+L+R+L Y  Y V  + NLTDV+DKII+   +  ++L   T++Y   FFEDLK LNI  A  YP AT HI ++V M+Q L+ERG+AYE++GS+Y+R+++FPAYGKLA  D S ++RGA    G  D DEY  +K D  DFALWK +  EDG ++W+TALG+GRPGWHIECSAM+  YLG   D+H GG D +FPHHENE+AQSEAA  G+RF N W+H   + V+N+KMSKS GNF TL+  L+ G + +  RY ++ + YR P+NF  EG+ GA+  V RL      L     +  + +G   +  ++++    FE  + DDLN   A  A+F +V+   +A+      L P +A +V   + R D VLG+  +  +V+
Sbjct:    3 RFYNTMTRQKEDFHPIEPGKVNMYTCGPTVYNYPHIGNYRAYMFEDLLRRYLKYRHYQVTQVMNLTDVEDKIIRDSQQTSMTLDAFTQQYKTAFFEDLKTLNIEAAEVYPEATTHIPEMVDMIQTLLERGYAYEAEGSIYYRIDRFPAYGKLAHFDPSELQRGA---SGRIDIDEY--DKDDVHDFALWKVWSPEDGDIYWDTALGRGRPGWHIECSAMSMKYLGSHFDIHTGGEDNIFPHHENEIAQSEAAT-GERFVNYWLHCRHLLVDNQKMSKSLGNFYTLRDLLERGYKPKGLRYALLATHYRQPMNFTLEGISGAENAVQRLLDFMNTL-----QTTDGDGTAEVSALLQQTQTRFEESLDDDLNIAGALGAIFEMVREVNRAIADRQ--LSPDDAEQVSALMHRFDTVLGVLAEDDAVD 415          
BLAST of NO02G02070 vs. NCBI_GenBank
Match: WP_089721306.1 (cysteine--tRNA ligase [Candidatus Entotheonella palauensis])

HSP 1 Score: 401.0 bits (1029), Expect = 5.800e-108
Identity = 198/426 (46.48%), Postives = 278/426 (65.26%), Query Frame = 0
Query:   96 QLYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFGMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREVLVALERMDEVLGIFYDPPSVE 522
            + YNT +R+KE F   EP KV+ Y+CGPT+Y+Y HIGN+RA++  D+L+R+L Y  Y V  + NLTDV+DKII+   +  ++L   T++Y   FFEDLK LNI  A  YP AT HI ++V M+Q L+ERG+AYE++GS+Y+R+++FPAYGKLA  D S ++RGA    G  D DEY  +K D  DFALWKA+  EDG ++W+TALG+GRPGWHIECSAM+  YLG   D+H GG D +FPHHENE+AQSEAA  G+RF N W+H   + V+N+KMSKS GNF TL+  L+ G + +  RY ++ + YR P+NF  EG+ GA+  V RL      L     +  + +G   +  ++++    FE  + DDLN   A  A+F +V+   +A+      L P  A +V   + R D VLG+  +  +V+
Sbjct:    3 RFYNTMTRQKEDFHPIEPGKVNMYTCGPTVYNYPHIGNYRAYMFEDLLRRYLKYRHYQVTQVMNLTDVEDKIIRDSQQTSMTLDAFTQQYKTAFFEDLKTLNIEAAEVYPEATTHIPEMVDMIQTLLERGYAYEAEGSIYYRIDRFPAYGKLAHFDPSELQRGA---SGRIDIDEY--DKDDVHDFALWKAWSPEDGDIYWDTALGRGRPGWHIECSAMSMKYLGSHFDIHTGGEDNIFPHHENEIAQSEAAT-GERFVNYWLHCRHLLVDNQKMSKSLGNFYTLRDLLERGYKPKGLRYALLATHYRQPMNFTLEGISGAENAVQRLLDFMNTL-----QTTDGDGTAEVSALLQQTQTRFEESLDDDLNIAGALGAIFEMVREVNRAIADRQ--LSPDGAEQVSALMHRFDTVLGVLAEDDAVD 415          
The following BLAST results are available for this feature:
BLAST of NO02G02070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30518.13.100e-20277.26cysteinyl-trna synthetase [Nannochloropsis gaditan... [more]
CBJ26372.11.400e-15963.92Cysteinyl-tRNA Synthetase [Ectocarpus siliculosus][more]
XP_005819331.12.000e-13762.03hypothetical protein GUITHDRAFT_82387 [Guillardia ... [more]
EJK77487.17.200e-12753.76hypothetical protein THAOC_00680, partial [Thalass... [more]
XP_005715284.14.800e-12355.08Cysteinyl-tRNA Synthetase [Chondrus crispus] >CDF3... [more]
XP_005535555.14.200e-11951.65cysteine--tRNA ligase, chloroplast or mitochondria... [more]
XP_002288148.13.600e-11852.97probable cysteinyl-trna synthetase, partial [Thala... [more]
CEL93242.15.700e-11647.22unnamed protein product [Vitrella brassicaformis C... [more]
ETX02520.15.800e-10846.24cysteinyl-tRNA synthetase [Candidatus Entotheonell... [more]
WP_089721306.15.800e-10846.48cysteine--tRNA ligase [Candidatus Entotheonella pa... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL020nonsL020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR005ngnoR005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006829NSK006829Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G02070.1NO02G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636094gene_793Nannochloropsis oceanica (N. oceanica CCMP1779)gene
CYSRSgene204Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G02070.1NO02G02070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G02070 ID=NO02G02070|Name=NO02G02070|organism=Nannochloropsis oceanica|type=gene|length=2487bp
GGACAAACACAGGGGGAACGGAGCAAGAAGAGGGGAGCTGTCTTTACTGC
GGGGCACTAGCTCAGCTATGGCTGTGGCTCCAAGACCTCCACCATTACCA
AGACCTCGCAGCATATTCAAGCCCTACGAGCCTCACCATCTCCAGCATGC
CCTCCCCTTTCTCCTCCTGCTACTCGTCCTGGGTCAGCCTAGCACCGTCC
AAGCCTTCTTATCTCCTTTTAGCCTGTCGTTATATTCCTTTATTCGATAT
CCACCAAGgtaagacgggcatgcatcaacgtgtgtgaacgttggacagcc
aagtaagcagggattatggatgatactttccttcgaccaccttacttacc
gtcgataccacatccacacatgagcacagGATTGCCACCTCGCGTGCTTC
TGCTTCATCTACCGCGATGGCTGCTGATAATAATGCCCTGTCCCGCAAAC
TATTGACAAGCGACATACCTTTCCAGCTCTACAACACGGCCTCCAGAAAA
AAGGAGCCATTCAAGACCGgtacgtgccttcccttcctgtcatttcttcc
agcatgtgtagctgttcccttcatttctgctttcacacttagtgaagcga
atctttgcatactcaatttcttccgttctcactaacccatcatattcacc
tgccctccctccctccctccctccccctccccttccctctccccagAGGA
ACCCAGCAAAGTCTCCTTCTACAGCTGTGGCCCTACCATCTACGACTACG
CGCACATCGGAAATTTTCGTGCCTTTCTCACCTATGACGTGCTTAAGCGG
TGGCTGCTTTACTCGGGTTATAGCGTCGAACATATATGTAATTTAACGGA
TGTGGACGATAAAATAATCAAGAGGATGGCGAGGGACAAAATATCCTTGC
CGGAGCTGACGGAAAAATACGCCCAAGTATTCTTTGAAGATTTGAAGGCA
TTGAATATCGTGCCTGCAAGTCGCTACCCGCGGGCGACGGAGCATATTGA
TGACATAGTTCATATGGTGCAGGAATTGATGGAACGgtaggtgcttcctc
tctccttccttcccttcaatgcagcgtacctcctctctccctcataattg
tctcagcggcctcctcctccttataaatttctctttttaaattacctctg
atctcatcacaacaatttctgtccgccttccctccctccctccttctctc
catccctccctcgtctgtccagGGGTTTCGCTTACGAAAGCCAAGGTTCC
GTCTATTTCCGTGTTAACAAATTCCCCGCTTACGGGAAATTGGCTCGGCT
GGATTTCTCAGGCATGGAAAGAGGGGCAGGGGAGGGGGGAGGAATCAACG
ATGCAGACGAGTATGTTGCAGAGAAGGGGGACGCAAAGGATTTTGCGCTG
TGGAAGGCGTACAAAGAGGAAGACGGGCCTGTGTTTTGGGAGACGGCACT
GGGAAAGGGTCGGCCGGGGTGGCACATCGAGTGTAGTGCTATGGCGAGGA
CATATCTGGGGTTAACTGTAGATGTGCACGCGGGAGGGGTTGATTTGGTT
TTCCCTCATCATGAAAATGAGGTGGCACAGAGCGAAGCGGCGAATGGAGG
GAAACGGTTTTGTAACTGTTGGGTCCACAACGGGTTTGTGAATGTGGAAA
ATGAGAAGATGTCGAAGAGTAAGGGGAATTTCCTCACGTTGAAGGGGAGC
TTGAAGGGAGGGTTGGAGTTAAGAGCGTTTCGGTATTTGGTCGTTACGAG
CCAATACCGGAGTCCGTTGAATTTTAACAAGGAGGGCCTGGAGGGGGCAA
AGAAGACGGTGATGAGGCTGGATAAATTGAGAAAACGTTTGCTGGATGTG
GTGGAGAAAGGGAAGGAGGACGAGGGAGGGTTTGGGATGAAGGATGTGAT
TGAGAAAGCTTTGAAGGGGTTTGAGGCGGGGATGGCGGATGATTTGAATA
CACCAAGGGCCGCGGCTGCCTTGTTTACTTTGGTGAAAGGCGCGGAGAAA
GCGTTAAAATCGACCCCTCCCTTCCTCCCTCCCTCGGAGGCCCGCGAGGT
TTTGGTGGCTTTGGAAAGGATGGATGAAGTGTTGGGGATTTTTTATGACC
CTCCCTCAGTGGAGGGGGGGTAGAGGGAGGGGAGGAGGGAGGGGGACCGG
TGATTGTGGCTTTGAATGACTTGCCTGTGGAAGCGCAGGAGTTAGTAAGG
AGGAGGGGAAAGGCGAAGGAGAATAAAATCTGGGGGGAGGCAGATGGATG
TAGGGATGCGTTGAAGAGTAAATTTGGGGTGATTTTAAAGGATGTGAAGG
GGGGAGAGGTGCAGATCATGAAGGAGGGGTAGGGTGGAGGGAGGGAGCAG
GGGGCAGAGAGCATGAGGAAGAGGAGCAGGAAAAGGAAGGGGAAGGGAAA
GAAGAAGGAGGGTGGATGAGAGGAAGATGAGAGGAAATCCAAATTAAGGA
GAAAGAAAGTACGTACGCATGCACATGTTCCTATGGT
back to top

protein sequence of NO02G02070.1

>NO02G02070.1-protein ID=NO02G02070.1-protein|Name=NO02G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp
MAVAPRPPPLPRPRSIFKPYEPHHLQHALPFLLLLLVLGQPSTVQAFLSP
FSLSLYSFIRYPPRIATSRASASSTAMAADNNALSRKLLTSDIPFQLYNT
ASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYS
GYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVP
ASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARL
DFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETAL
GKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGG
KRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTS
QYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFGMKDVI
EKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREV
LVALERMDEVLGIFYDPPSVEGG*
back to top
Synonyms
Publications