NO02G02070.1, NO02G02070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02070.1
Unique NameNO02G02070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2003
Alignment locationchr2:592116..594602 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:592116..594602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G02070.1 vs.
Match: EWM30518.1 (cysteinyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 714.1 bits (1842), Expect = 3.100e-202
Identity = 350/453 (77.26%), Postives = 396/453 (87.42%), Query Frame = 0
Query:   74 STAMAADNNALSRKLLTSDIPFQLYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGK-EDEGG---FGMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREVLVALERMDEVLGIFYDPPSVEG 523
            S+  A+ + A SR  LT+DIPFQLYNTASRKKEPFKT +P KVSFYSCGPTIYD+AHIGNFRAFLTYDVLKRWLLYSGY VEH+CNLTDVDDKIIKRMARD +SLPELT+K+A+VFFEDL+ALN++PAS YPRATEHI DIV MVQ L++RG+AYESQGS YFRV++FP+YG LA+LDFSGME GA +GGGI+DADEYVA+KGDAKDFALWKAYK EDGPVFWETALGKGRPGWHIECSAMAR +LG TVD+HAGGVDLVFPHHENE+AQSE A+ G+RFC CWVHNGFVNVENEKMSKSKGNFLTL+GSL+ GL++RAFRYLVVTSQYR PLNFN EGL GA+KT++RLDK++  L  V  +GK  +EGG     M+ VI+KA+ GFEAGMADDLNTPRAAAALFTLVK  EKALK   P L PS AR VL  LE+MD VLGIFY+PP +EG
Sbjct:   69 SSISASGSTARSRNFLTNDIPFQLYNTASRKKEPFKTGQPGKVSFYSCGPTIYDFAHIGNFRAFLTYDVLKRWLLYSGYDVEHVCNLTDVDDKIIKRMARDGLSLPELTDKFARVFFEDLQALNVLPASHYPRATEHIQDIVSMVQALVDRGYAYESQGSFYFRVSRFPSYGSLAKLDFSGMEMGAAKGGGISDADEYVADKGDAKDFALWKAYKAEDGPVFWETALGKGRPGWHIECSAMARRFLGPTVDLHAGGVDLVFPHHENEIAQSEGAS-GERFCRCWVHNGFVNVENEKMSKSKGNFLTLRGSLETGLDVRAFRYLVVTSQYRMPLNFNTEGLAGARKTILRLDKVKAALTRVAREGKGAEEGGEIDEEMQGVIDKAVAGFEAGMADDLNTPRAAAALFTLVKATEKALKGDSPRLRPSGARLVLATLEQMDAVLGIFYEPPLMEG 520          
The following BLAST results are available for this feature:
BLAST of NO02G02070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30518.13.100e-20277.26cysteinyl-trna synthetase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02070NO02G02070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02070.1NO02G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02070.1.cds1NO02G02070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02070.1.cds2NO02G02070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02070.1.cds3NO02G02070.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02070.1.cds4NO02G02070.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02070.1 ID=NO02G02070.1|Name=NO02G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp
GGACAAACACAGGGGGAACGGAGCAAGAAGAGGGGAGCTGTCTTTACTGC
GGGGCACTAGCTCAGCTATGGCTGTGGCTCCAAGACCTCCACCATTACCA
AGACCTCGCAGCATATTCAAGCCCTACGAGCCTCACCATCTCCAGCATGC
CCTCCCCTTTCTCCTCCTGCTACTCGTCCTGGGTCAGCCTAGCACCGTCC
AAGCCTTCTTATCTCCTTTTAGCCTGTCGTTATATTCCTTTATTCGATAT
CCACCAAGGATTGCCACCTCGCGTGCTTCTGCTTCATCTACCGCGATGGC
TGCTGATAATAATGCCCTGTCCCGCAAACTATTGACAAGCGACATACCTT
TCCAGCTCTACAACACGGCCTCCAGAAAAAAGGAGCCATTCAAGACCGAG
GAACCCAGCAAAGTCTCCTTCTACAGCTGTGGCCCTACCATCTACGACTA
CGCGCACATCGGAAATTTTCGTGCCTTTCTCACCTATGACGTGCTTAAGC
GGTGGCTGCTTTACTCGGGTTATAGCGTCGAACATATATGTAATTTAACG
GATGTGGACGATAAAATAATCAAGAGGATGGCGAGGGACAAAATATCCTT
GCCGGAGCTGACGGAAAAATACGCCCAAGTATTCTTTGAAGATTTGAAGG
CATTGAATATCGTGCCTGCAAGTCGCTACCCGCGGGCGACGGAGCATATT
GATGACATAGTTCATATGGTGCAGGAATTGATGGAACGGGGTTTCGCTTA
CGAAAGCCAAGGTTCCGTCTATTTCCGTGTTAACAAATTCCCCGCTTACG
GGAAATTGGCTCGGCTGGATTTCTCAGGCATGGAAAGAGGGGCAGGGGAG
GGGGGAGGAATCAACGATGCAGACGAGTATGTTGCAGAGAAGGGGGACGC
AAAGGATTTTGCGCTGTGGAAGGCGTACAAAGAGGAAGACGGGCCTGTGT
TTTGGGAGACGGCACTGGGAAAGGGTCGGCCGGGGTGGCACATCGAGTGT
AGTGCTATGGCGAGGACATATCTGGGGTTAACTGTAGATGTGCACGCGGG
AGGGGTTGATTTGGTTTTCCCTCATCATGAAAATGAGGTGGCACAGAGCG
AAGCGGCGAATGGAGGGAAACGGTTTTGTAACTGTTGGGTCCACAACGGG
TTTGTGAATGTGGAAAATGAGAAGATGTCGAAGAGTAAGGGGAATTTCCT
CACGTTGAAGGGGAGCTTGAAGGGAGGGTTGGAGTTAAGAGCGTTTCGGT
ATTTGGTCGTTACGAGCCAATACCGGAGTCCGTTGAATTTTAACAAGGAG
GGCCTGGAGGGGGCAAAGAAGACGGTGATGAGGCTGGATAAATTGAGAAA
ACGTTTGCTGGATGTGGTGGAGAAAGGGAAGGAGGACGAGGGAGGGTTTG
GGATGAAGGATGTGATTGAGAAAGCTTTGAAGGGGTTTGAGGCGGGGATG
GCGGATGATTTGAATACACCAAGGGCCGCGGCTGCCTTGTTTACTTTGGT
GAAAGGCGCGGAGAAAGCGTTAAAATCGACCCCTCCCTTCCTCCCTCCCT
CGGAGGCCCGCGAGGTTTTGGTGGCTTTGGAAAGGATGGATGAAGTGTTG
GGGATTTTTTATGACCCTCCCTCAGTGGAGGGGGGGTAGAGGGAGGGGAG
GAGGGAGGGGGACCGGTGATTGTGGCTTTGAATGACTTGCCTGTGGAAGC
GCAGGAGTTAGTAAGGAGGAGGGGAAAGGCGAAGGAGAATAAAATCTGGG
GGGAGGCAGATGGATGTAGGGATGCGTTGAAGAGTAAATTTGGGGTGATT
TTAAAGGATGTGAAGGGGGGAGAGGTGCAGATCATGAAGGAGGGGTAGGG
TGGAGGGAGGGAGCAGGGGGCAGAGAGCATGAGGAAGAGGAGCAGGAAAA
GGAAGGGGAAGGGAAAGAAGAAGGAGGGTGGATGAGAGGAAGATGAGAGG
AAATCCAAATTAAGGAGAAAGAAAGTACGTACGCATGCACATGTTCCTAT
GGT
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protein sequence of NO02G02070.1

>NO02G02070.1-protein ID=NO02G02070.1-protein|Name=NO02G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp
MAVAPRPPPLPRPRSIFKPYEPHHLQHALPFLLLLLVLGQPSTVQAFLSP
FSLSLYSFIRYPPRIATSRASASSTAMAADNNALSRKLLTSDIPFQLYNT
ASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYS
GYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVP
ASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARL
DFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETAL
GKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGG
KRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTS
QYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFGMKDVI
EKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREV
LVALERMDEVLGIFYDPPSVEGG*
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mRNA from alignment at chr2:592116..594602-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02070.1 ID=NO02G02070.1|Name=NO02G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2487bp|location=Sequence derived from alignment at chr2:592116..594602- (Nannochloropsis oceanica)
GGACAAACACAGGGGGAACGGAGCAAGAAGAGGGGAGCTGTCTTTACTGC GGGGCACTAGCTCAGCTATGGCTGTGGCTCCAAGACCTCCACCATTACCA AGACCTCGCAGCATATTCAAGCCCTACGAGCCTCACCATCTCCAGCATGC CCTCCCCTTTCTCCTCCTGCTACTCGTCCTGGGTCAGCCTAGCACCGTCC AAGCCTTCTTATCTCCTTTTAGCCTGTCGTTATATTCCTTTATTCGATAT CCACCAAGGTAAGACGGGCATGCATCAACGTGTGTGAACGTTGGACAGCC AAGTAAGCAGGGATTATGGATGATACTTTCCTTCGACCACCTTACTTACC GTCGATACCACATCCACACATGAGCACAGGATTGCCACCTCGCGTGCTTC TGCTTCATCTACCGCGATGGCTGCTGATAATAATGCCCTGTCCCGCAAAC TATTGACAAGCGACATACCTTTCCAGCTCTACAACACGGCCTCCAGAAAA AAGGAGCCATTCAAGACCGGTACGTGCCTTCCCTTCCTGTCATTTCTTCC AGCATGTGTAGCTGTTCCCTTCATTTCTGCTTTCACACTTAGTGAAGCGA ATCTTTGCATACTCAATTTCTTCCGTTCTCACTAACCCATCATATTCACC TGCCCTCCCTCCCTCCCTCCCTCCCCCTCCCCTTCCCTCTCCCCAGAGGA ACCCAGCAAAGTCTCCTTCTACAGCTGTGGCCCTACCATCTACGACTACG CGCACATCGGAAATTTTCGTGCCTTTCTCACCTATGACGTGCTTAAGCGG TGGCTGCTTTACTCGGGTTATAGCGTCGAACATATATGTAATTTAACGGA TGTGGACGATAAAATAATCAAGAGGATGGCGAGGGACAAAATATCCTTGC CGGAGCTGACGGAAAAATACGCCCAAGTATTCTTTGAAGATTTGAAGGCA TTGAATATCGTGCCTGCAAGTCGCTACCCGCGGGCGACGGAGCATATTGA TGACATAGTTCATATGGTGCAGGAATTGATGGAACGGTAGGTGCTTCCTC TCTCCTTCCTTCCCTTCAATGCAGCGTACCTCCTCTCTCCCTCATAATTG TCTCAGCGGCCTCCTCCTCCTTATAAATTTCTCTTTTTAAATTACCTCTG ATCTCATCACAACAATTTCTGTCCGCCTTCCCTCCCTCCCTCCTTCTCTC CATCCCTCCCTCGTCTGTCCAGGGGTTTCGCTTACGAAAGCCAAGGTTCC GTCTATTTCCGTGTTAACAAATTCCCCGCTTACGGGAAATTGGCTCGGCT GGATTTCTCAGGCATGGAAAGAGGGGCAGGGGAGGGGGGAGGAATCAACG ATGCAGACGAGTATGTTGCAGAGAAGGGGGACGCAAAGGATTTTGCGCTG TGGAAGGCGTACAAAGAGGAAGACGGGCCTGTGTTTTGGGAGACGGCACT GGGAAAGGGTCGGCCGGGGTGGCACATCGAGTGTAGTGCTATGGCGAGGA CATATCTGGGGTTAACTGTAGATGTGCACGCGGGAGGGGTTGATTTGGTT TTCCCTCATCATGAAAATGAGGTGGCACAGAGCGAAGCGGCGAATGGAGG GAAACGGTTTTGTAACTGTTGGGTCCACAACGGGTTTGTGAATGTGGAAA ATGAGAAGATGTCGAAGAGTAAGGGGAATTTCCTCACGTTGAAGGGGAGC TTGAAGGGAGGGTTGGAGTTAAGAGCGTTTCGGTATTTGGTCGTTACGAG CCAATACCGGAGTCCGTTGAATTTTAACAAGGAGGGCCTGGAGGGGGCAA AGAAGACGGTGATGAGGCTGGATAAATTGAGAAAACGTTTGCTGGATGTG GTGGAGAAAGGGAAGGAGGACGAGGGAGGGTTTGGGATGAAGGATGTGAT TGAGAAAGCTTTGAAGGGGTTTGAGGCGGGGATGGCGGATGATTTGAATA CACCAAGGGCCGCGGCTGCCTTGTTTACTTTGGTGAAAGGCGCGGAGAAA GCGTTAAAATCGACCCCTCCCTTCCTCCCTCCCTCGGAGGCCCGCGAGGT TTTGGTGGCTTTGGAAAGGATGGATGAAGTGTTGGGGATTTTTTATGACC CTCCCTCAGTGGAGGGGGGGTAGAGGGAGGGGAGGAGGGAGGGGGACCGG TGATTGTGGCTTTGAATGACTTGCCTGTGGAAGCGCAGGAGTTAGTAAGG AGGAGGGGAAAGGCGAAGGAGAATAAAATCTGGGGGGAGGCAGATGGATG TAGGGATGCGTTGAAGAGTAAATTTGGGGTGATTTTAAAGGATGTGAAGG GGGGAGAGGTGCAGATCATGAAGGAGGGGTAGGGTGGAGGGAGGGAGCAG GGGGCAGAGAGCATGAGGAAGAGGAGCAGGAAAAGGAAGGGGAAGGGAAA GAAGAAGGAGGGTGGATGAGAGGAAGATGAGAGGAAATCCAAATTAAGGA GAAAGAAAGTACGTACGCATGCACATGTTCCTATGGT
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Coding sequence (CDS) from alignment at chr2:592116..594602-

>NO02G02070.1 ID=NO02G02070.1|Name=NO02G02070.1|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at chr2:592116..594602- (Nannochloropsis oceanica)
ATGGCTGTGGCTCCAAGACCTCCACCATTACCAAGACCTCGCAGCATATT
CAAGCCCTACGAGCCTCACCATCTCCAGCATGCCCTCCCCTTTCTCCTCC
TGCTACTCGTCCTGGGTCAGCCTAGCACCGTCCAAGCCTTCTTATCTCCT
TTTAGCCTGTCGTTATATTCCTTTATTCGATATCCACCAAGGATTGCCAC
CTCGCGTGCTTCTGCTTCATCTACCGCGATGGCTGCTGATAATAATGCCC
TGTCCCGCAAACTATTGACAAGCGACATACCTTTCCAGCTCTACAACACG
GCCTCCAGAAAAAAGGAGCCATTCAAGACCGAGGAACCCAGCAAAGTCTC
CTTCTACAGCTGTGGCCCTACCATCTACGACTACGCGCACATCGGAAATT
TTCGTGCCTTTCTCACCTATGACGTGCTTAAGCGGTGGCTGCTTTACTCG
GGTTATAGCGTCGAACATATATGTAATTTAACGGATGTGGACGATAAAAT
AATCAAGAGGATGGCGAGGGACAAAATATCCTTGCCGGAGCTGACGGAAA
AATACGCCCAAGTATTCTTTGAAGATTTGAAGGCATTGAATATCGTGCCT
GCAAGTCGCTACCCGCGGGCGACGGAGCATATTGATGACATAGTTCATAT
GGTGCAGGAATTGATGGAACGGGGTTTCGCTTACGAAAGCCAAGGTTCCG
TCTATTTCCGTGTTAACAAATTCCCCGCTTACGGGAAATTGGCTCGGCTG
GATTTCTCAGGCATGGAAAGAGGGGCAGGGGAGGGGGGAGGAATCAACGA
TGCAGACGAGTATGTTGCAGAGAAGGGGGACGCAAAGGATTTTGCGCTGT
GGAAGGCGTACAAAGAGGAAGACGGGCCTGTGTTTTGGGAGACGGCACTG
GGAAAGGGTCGGCCGGGGTGGCACATCGAGTGTAGTGCTATGGCGAGGAC
ATATCTGGGGTTAACTGTAGATGTGCACGCGGGAGGGGTTGATTTGGTTT
TCCCTCATCATGAAAATGAGGTGGCACAGAGCGAAGCGGCGAATGGAGGG
AAACGGTTTTGTAACTGTTGGGTCCACAACGGGTTTGTGAATGTGGAAAA
TGAGAAGATGTCGAAGAGTAAGGGGAATTTCCTCACGTTGAAGGGGAGCT
TGAAGGGAGGGTTGGAGTTAAGAGCGTTTCGGTATTTGGTCGTTACGAGC
CAATACCGGAGTCCGTTGAATTTTAACAAGGAGGGCCTGGAGGGGGCAAA
GAAGACGGTGATGAGGCTGGATAAATTGAGAAAACGTTTGCTGGATGTGG
TGGAGAAAGGGAAGGAGGACGAGGGAGGGTTTGGGATGAAGGATGTGATT
GAGAAAGCTTTGAAGGGGTTTGAGGCGGGGATGGCGGATGATTTGAATAC
ACCAAGGGCCGCGGCTGCCTTGTTTACTTTGGTGAAAGGCGCGGAGAAAG
CGTTAAAATCGACCCCTCCCTTCCTCCCTCCCTCGGAGGCCCGCGAGGTT
TTGGTGGCTTTGGAAAGGATGGATGAAGTGTTGGGGATTTTTTATGACCC
TCCCTCAGTGGAGGGGGGGTAG
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Synonyms
Publications