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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:592116..594602 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02070.1 vs.
Match: EWM30518.1 (cysteinyl-trna synthetase [Nannochloropsis gaditana]) HSP 1 Score: 714.1 bits (1842), Expect = 3.100e-202 Identity = 350/453 (77.26%), Postives = 396/453 (87.42%), Query Frame = 0
Query: 74 STAMAADNNALSRKLLTSDIPFQLYNTASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYSGYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVPASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARLDFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETALGKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGGKRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTSQYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGK-EDEGG---FGMKDVIEKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREVLVALERMDEVLGIFYDPPSVEG 523
S+ A+ + A SR LT+DIPFQLYNTASRKKEPFKT +P KVSFYSCGPTIYD+AHIGNFRAFLTYDVLKRWLLYSGY VEH+CNLTDVDDKIIKRMARD +SLPELT+K+A+VFFEDL+ALN++PAS YPRATEHI DIV MVQ L++RG+AYESQGS YFRV++FP+YG LA+LDFSGME GA +GGGI+DADEYVA+KGDAKDFALWKAYK EDGPVFWETALGKGRPGWHIECSAMAR +LG TVD+HAGGVDLVFPHHENE+AQSE A+ G+RFC CWVHNGFVNVENEKMSKSKGNFLTL+GSL+ GL++RAFRYLVVTSQYR PLNFN EGL GA+KT++RLDK++ L V +GK +EGG M+ VI+KA+ GFEAGMADDLNTPRAAAALFTLVK EKALK P L PS AR VL LE+MD VLGIFY+PP +EG
Sbjct: 69 SSISASGSTARSRNFLTNDIPFQLYNTASRKKEPFKTGQPGKVSFYSCGPTIYDFAHIGNFRAFLTYDVLKRWLLYSGYDVEHVCNLTDVDDKIIKRMARDGLSLPELTDKFARVFFEDLQALNVLPASHYPRATEHIQDIVSMVQALVDRGYAYESQGSFYFRVSRFPSYGSLAKLDFSGMEMGAAKGGGISDADEYVADKGDAKDFALWKAYKAEDGPVFWETALGKGRPGWHIECSAMARRFLGPTVDLHAGGVDLVFPHHENEIAQSEGAS-GERFCRCWVHNGFVNVENEKMSKSKGNFLTLRGSLETGLDVRAFRYLVVTSQYRMPLNFNTEGLAGARKTILRLDKVKAALTRVAREGKGAEEGGEIDEEMQGVIDKAVAGFEAGMADDLNTPRAAAALFTLVKATEKALKGDSPRLRPSGARLVLATLEQMDAVLGIFYEPPLMEG 520
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02070.1 ID=NO02G02070.1|Name=NO02G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp GGACAAACACAGGGGGAACGGAGCAAGAAGAGGGGAGCTGTCTTTACTGC GGGGCACTAGCTCAGCTATGGCTGTGGCTCCAAGACCTCCACCATTACCA AGACCTCGCAGCATATTCAAGCCCTACGAGCCTCACCATCTCCAGCATGC CCTCCCCTTTCTCCTCCTGCTACTCGTCCTGGGTCAGCCTAGCACCGTCC AAGCCTTCTTATCTCCTTTTAGCCTGTCGTTATATTCCTTTATTCGATAT CCACCAAGGATTGCCACCTCGCGTGCTTCTGCTTCATCTACCGCGATGGC TGCTGATAATAATGCCCTGTCCCGCAAACTATTGACAAGCGACATACCTT TCCAGCTCTACAACACGGCCTCCAGAAAAAAGGAGCCATTCAAGACCGAG GAACCCAGCAAAGTCTCCTTCTACAGCTGTGGCCCTACCATCTACGACTA CGCGCACATCGGAAATTTTCGTGCCTTTCTCACCTATGACGTGCTTAAGC GGTGGCTGCTTTACTCGGGTTATAGCGTCGAACATATATGTAATTTAACG GATGTGGACGATAAAATAATCAAGAGGATGGCGAGGGACAAAATATCCTT GCCGGAGCTGACGGAAAAATACGCCCAAGTATTCTTTGAAGATTTGAAGG CATTGAATATCGTGCCTGCAAGTCGCTACCCGCGGGCGACGGAGCATATT GATGACATAGTTCATATGGTGCAGGAATTGATGGAACGGGGTTTCGCTTA CGAAAGCCAAGGTTCCGTCTATTTCCGTGTTAACAAATTCCCCGCTTACG GGAAATTGGCTCGGCTGGATTTCTCAGGCATGGAAAGAGGGGCAGGGGAG GGGGGAGGAATCAACGATGCAGACGAGTATGTTGCAGAGAAGGGGGACGC AAAGGATTTTGCGCTGTGGAAGGCGTACAAAGAGGAAGACGGGCCTGTGT TTTGGGAGACGGCACTGGGAAAGGGTCGGCCGGGGTGGCACATCGAGTGT AGTGCTATGGCGAGGACATATCTGGGGTTAACTGTAGATGTGCACGCGGG AGGGGTTGATTTGGTTTTCCCTCATCATGAAAATGAGGTGGCACAGAGCG AAGCGGCGAATGGAGGGAAACGGTTTTGTAACTGTTGGGTCCACAACGGG TTTGTGAATGTGGAAAATGAGAAGATGTCGAAGAGTAAGGGGAATTTCCT CACGTTGAAGGGGAGCTTGAAGGGAGGGTTGGAGTTAAGAGCGTTTCGGT ATTTGGTCGTTACGAGCCAATACCGGAGTCCGTTGAATTTTAACAAGGAG GGCCTGGAGGGGGCAAAGAAGACGGTGATGAGGCTGGATAAATTGAGAAA ACGTTTGCTGGATGTGGTGGAGAAAGGGAAGGAGGACGAGGGAGGGTTTG GGATGAAGGATGTGATTGAGAAAGCTTTGAAGGGGTTTGAGGCGGGGATG GCGGATGATTTGAATACACCAAGGGCCGCGGCTGCCTTGTTTACTTTGGT GAAAGGCGCGGAGAAAGCGTTAAAATCGACCCCTCCCTTCCTCCCTCCCT CGGAGGCCCGCGAGGTTTTGGTGGCTTTGGAAAGGATGGATGAAGTGTTG GGGATTTTTTATGACCCTCCCTCAGTGGAGGGGGGGTAGAGGGAGGGGAG GAGGGAGGGGGACCGGTGATTGTGGCTTTGAATGACTTGCCTGTGGAAGC GCAGGAGTTAGTAAGGAGGAGGGGAAAGGCGAAGGAGAATAAAATCTGGG GGGAGGCAGATGGATGTAGGGATGCGTTGAAGAGTAAATTTGGGGTGATT TTAAAGGATGTGAAGGGGGGAGAGGTGCAGATCATGAAGGAGGGGTAGGG TGGAGGGAGGGAGCAGGGGGCAGAGAGCATGAGGAAGAGGAGCAGGAAAA GGAAGGGGAAGGGAAAGAAGAAGGAGGGTGGATGAGAGGAAGATGAGAGG AAATCCAAATTAAGGAGAAAGAAAGTACGTACGCATGCACATGTTCCTAT GGT back to topprotein sequence of NO02G02070.1 >NO02G02070.1-protein ID=NO02G02070.1-protein|Name=NO02G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp MAVAPRPPPLPRPRSIFKPYEPHHLQHALPFLLLLLVLGQPSTVQAFLSP FSLSLYSFIRYPPRIATSRASASSTAMAADNNALSRKLLTSDIPFQLYNT ASRKKEPFKTEEPSKVSFYSCGPTIYDYAHIGNFRAFLTYDVLKRWLLYS GYSVEHICNLTDVDDKIIKRMARDKISLPELTEKYAQVFFEDLKALNIVP ASRYPRATEHIDDIVHMVQELMERGFAYESQGSVYFRVNKFPAYGKLARL DFSGMERGAGEGGGINDADEYVAEKGDAKDFALWKAYKEEDGPVFWETAL GKGRPGWHIECSAMARTYLGLTVDVHAGGVDLVFPHHENEVAQSEAANGG KRFCNCWVHNGFVNVENEKMSKSKGNFLTLKGSLKGGLELRAFRYLVVTS QYRSPLNFNKEGLEGAKKTVMRLDKLRKRLLDVVEKGKEDEGGFGMKDVI EKALKGFEAGMADDLNTPRAAAALFTLVKGAEKALKSTPPFLPPSEAREV LVALERMDEVLGIFYDPPSVEGG* back to topmRNA from alignment at chr2:592116..594602- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02070.1 ID=NO02G02070.1|Name=NO02G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2487bp|location=Sequence derived from alignment at chr2:592116..594602- (Nannochloropsis oceanica) GGACAAACACAGGGGGAACGGAGCAAGAAGAGGGGAGCTGTCTTTACTGC
GGGGCACTAGCTCAGCTATGGCTGTGGCTCCAAGACCTCCACCATTACCA
AGACCTCGCAGCATATTCAAGCCCTACGAGCCTCACCATCTCCAGCATGC
CCTCCCCTTTCTCCTCCTGCTACTCGTCCTGGGTCAGCCTAGCACCGTCC
AAGCCTTCTTATCTCCTTTTAGCCTGTCGTTATATTCCTTTATTCGATAT
CCACCAAGGTAAGACGGGCATGCATCAACGTGTGTGAACGTTGGACAGCC
AAGTAAGCAGGGATTATGGATGATACTTTCCTTCGACCACCTTACTTACC
GTCGATACCACATCCACACATGAGCACAGGATTGCCACCTCGCGTGCTTC
TGCTTCATCTACCGCGATGGCTGCTGATAATAATGCCCTGTCCCGCAAAC
TATTGACAAGCGACATACCTTTCCAGCTCTACAACACGGCCTCCAGAAAA
AAGGAGCCATTCAAGACCGGTACGTGCCTTCCCTTCCTGTCATTTCTTCC
AGCATGTGTAGCTGTTCCCTTCATTTCTGCTTTCACACTTAGTGAAGCGA
ATCTTTGCATACTCAATTTCTTCCGTTCTCACTAACCCATCATATTCACC
TGCCCTCCCTCCCTCCCTCCCTCCCCCTCCCCTTCCCTCTCCCCAGAGGA
ACCCAGCAAAGTCTCCTTCTACAGCTGTGGCCCTACCATCTACGACTACG
CGCACATCGGAAATTTTCGTGCCTTTCTCACCTATGACGTGCTTAAGCGG
TGGCTGCTTTACTCGGGTTATAGCGTCGAACATATATGTAATTTAACGGA
TGTGGACGATAAAATAATCAAGAGGATGGCGAGGGACAAAATATCCTTGC
CGGAGCTGACGGAAAAATACGCCCAAGTATTCTTTGAAGATTTGAAGGCA
TTGAATATCGTGCCTGCAAGTCGCTACCCGCGGGCGACGGAGCATATTGA
TGACATAGTTCATATGGTGCAGGAATTGATGGAACGGTAGGTGCTTCCTC
TCTCCTTCCTTCCCTTCAATGCAGCGTACCTCCTCTCTCCCTCATAATTG
TCTCAGCGGCCTCCTCCTCCTTATAAATTTCTCTTTTTAAATTACCTCTG
ATCTCATCACAACAATTTCTGTCCGCCTTCCCTCCCTCCCTCCTTCTCTC
CATCCCTCCCTCGTCTGTCCAGGGGTTTCGCTTACGAAAGCCAAGGTTCC
GTCTATTTCCGTGTTAACAAATTCCCCGCTTACGGGAAATTGGCTCGGCT
GGATTTCTCAGGCATGGAAAGAGGGGCAGGGGAGGGGGGAGGAATCAACG
ATGCAGACGAGTATGTTGCAGAGAAGGGGGACGCAAAGGATTTTGCGCTG
TGGAAGGCGTACAAAGAGGAAGACGGGCCTGTGTTTTGGGAGACGGCACT
GGGAAAGGGTCGGCCGGGGTGGCACATCGAGTGTAGTGCTATGGCGAGGA
CATATCTGGGGTTAACTGTAGATGTGCACGCGGGAGGGGTTGATTTGGTT
TTCCCTCATCATGAAAATGAGGTGGCACAGAGCGAAGCGGCGAATGGAGG
GAAACGGTTTTGTAACTGTTGGGTCCACAACGGGTTTGTGAATGTGGAAA
ATGAGAAGATGTCGAAGAGTAAGGGGAATTTCCTCACGTTGAAGGGGAGC
TTGAAGGGAGGGTTGGAGTTAAGAGCGTTTCGGTATTTGGTCGTTACGAG
CCAATACCGGAGTCCGTTGAATTTTAACAAGGAGGGCCTGGAGGGGGCAA
AGAAGACGGTGATGAGGCTGGATAAATTGAGAAAACGTTTGCTGGATGTG
GTGGAGAAAGGGAAGGAGGACGAGGGAGGGTTTGGGATGAAGGATGTGAT
TGAGAAAGCTTTGAAGGGGTTTGAGGCGGGGATGGCGGATGATTTGAATA
CACCAAGGGCCGCGGCTGCCTTGTTTACTTTGGTGAAAGGCGCGGAGAAA
GCGTTAAAATCGACCCCTCCCTTCCTCCCTCCCTCGGAGGCCCGCGAGGT
TTTGGTGGCTTTGGAAAGGATGGATGAAGTGTTGGGGATTTTTTATGACC
CTCCCTCAGTGGAGGGGGGGTAGAGGGAGGGGAGGAGGGAGGGGGACCGG
TGATTGTGGCTTTGAATGACTTGCCTGTGGAAGCGCAGGAGTTAGTAAGG
AGGAGGGGAAAGGCGAAGGAGAATAAAATCTGGGGGGAGGCAGATGGATG
TAGGGATGCGTTGAAGAGTAAATTTGGGGTGATTTTAAAGGATGTGAAGG
GGGGAGAGGTGCAGATCATGAAGGAGGGGTAGGGTGGAGGGAGGGAGCAG
GGGGCAGAGAGCATGAGGAAGAGGAGCAGGAAAAGGAAGGGGAAGGGAAA
GAAGAAGGAGGGTGGATGAGAGGAAGATGAGAGGAAATCCAAATTAAGGA
GAAAGAAAGTACGTACGCATGCACATGTTCCTATGGT back to topCoding sequence (CDS) from alignment at chr2:592116..594602- >NO02G02070.1 ID=NO02G02070.1|Name=NO02G02070.1|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at chr2:592116..594602- (Nannochloropsis oceanica) ATGGCTGTGGCTCCAAGACCTCCACCATTACCAAGACCTCGCAGCATATT CAAGCCCTACGAGCCTCACCATCTCCAGCATGCCCTCCCCTTTCTCCTCC TGCTACTCGTCCTGGGTCAGCCTAGCACCGTCCAAGCCTTCTTATCTCCT TTTAGCCTGTCGTTATATTCCTTTATTCGATATCCACCAAGGATTGCCAC CTCGCGTGCTTCTGCTTCATCTACCGCGATGGCTGCTGATAATAATGCCC TGTCCCGCAAACTATTGACAAGCGACATACCTTTCCAGCTCTACAACACG GCCTCCAGAAAAAAGGAGCCATTCAAGACCGAGGAACCCAGCAAAGTCTC CTTCTACAGCTGTGGCCCTACCATCTACGACTACGCGCACATCGGAAATT TTCGTGCCTTTCTCACCTATGACGTGCTTAAGCGGTGGCTGCTTTACTCG GGTTATAGCGTCGAACATATATGTAATTTAACGGATGTGGACGATAAAAT AATCAAGAGGATGGCGAGGGACAAAATATCCTTGCCGGAGCTGACGGAAA AATACGCCCAAGTATTCTTTGAAGATTTGAAGGCATTGAATATCGTGCCT GCAAGTCGCTACCCGCGGGCGACGGAGCATATTGATGACATAGTTCATAT GGTGCAGGAATTGATGGAACGGGGTTTCGCTTACGAAAGCCAAGGTTCCG TCTATTTCCGTGTTAACAAATTCCCCGCTTACGGGAAATTGGCTCGGCTG GATTTCTCAGGCATGGAAAGAGGGGCAGGGGAGGGGGGAGGAATCAACGA TGCAGACGAGTATGTTGCAGAGAAGGGGGACGCAAAGGATTTTGCGCTGT GGAAGGCGTACAAAGAGGAAGACGGGCCTGTGTTTTGGGAGACGGCACTG GGAAAGGGTCGGCCGGGGTGGCACATCGAGTGTAGTGCTATGGCGAGGAC ATATCTGGGGTTAACTGTAGATGTGCACGCGGGAGGGGTTGATTTGGTTT TCCCTCATCATGAAAATGAGGTGGCACAGAGCGAAGCGGCGAATGGAGGG AAACGGTTTTGTAACTGTTGGGTCCACAACGGGTTTGTGAATGTGGAAAA TGAGAAGATGTCGAAGAGTAAGGGGAATTTCCTCACGTTGAAGGGGAGCT TGAAGGGAGGGTTGGAGTTAAGAGCGTTTCGGTATTTGGTCGTTACGAGC CAATACCGGAGTCCGTTGAATTTTAACAAGGAGGGCCTGGAGGGGGCAAA GAAGACGGTGATGAGGCTGGATAAATTGAGAAAACGTTTGCTGGATGTGG TGGAGAAAGGGAAGGAGGACGAGGGAGGGTTTGGGATGAAGGATGTGATT GAGAAAGCTTTGAAGGGGTTTGAGGCGGGGATGGCGGATGATTTGAATAC ACCAAGGGCCGCGGCTGCCTTGTTTACTTTGGTGAAAGGCGCGGAGAAAG CGTTAAAATCGACCCCTCCCTTCCTCCCTCCCTCGGAGGCCCGCGAGGTT TTGGTGGCTTTGGAAAGGATGGATGAAGTGTTGGGGATTTTTTATGACCC TCCCTCAGTGGAGGGGGGGTAG back to top
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