NO02G01870, NO02G01870 (gene) Nannochloropsis oceanica

Overview
NameNO02G01870
Unique NameNO02G01870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1569
Alignment locationchr2:539493..541061 +

Link to JBrowse

Properties
Property NameValue
DescriptionAtp-dependent rna helicase ddx49-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:539493..541061 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
Homology
BLAST of NO02G01870 vs. NCBI_GenBank
Match: EWM30521.1 (atp-dependent rna helicase ddx49-like protein [Nannochloropsis gaditana])

HSP 1 Score: 682.9 bits (1761), Expect = 7.600e-193
Identity = 372/534 (69.66%), Postives = 421/534 (78.84%), Query Frame = 0
Query:    1 MVSLFASSSST-TKAGKKRPRPTTTATEKDGAFVVSKTPAAPALSPDPCTDATDAAVSPSAEVEEVALGASVAFLSSSSWTQLGLAAWIQRACTTMGFKRPTPVQEKCIPSVLQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGIFGLVLTPTRELAIQISEQFQALGAPLNLRHTVVIGGVSMVHQSVELARRPHIVVATPGRLWDHLRGAVPPDLSKCRFLVLDEADRLFCDGFEKHLAAILGAMTHPRRQTLLFSATMTHSLENLKSLTRVQPVLFDLTKERTLPSSLQQQYLFMPAQVKMCYLVCLLRKVLLPNKSAT--------------SSSTSSDVKSVIIFVGTCQRCQEVTEVMIESGLAAVSLHSVLSQKRRLASLGKFKSSLVKVLVSTDVASRGLDIPEVDLVVNFDLPRVPSDYVHRVGRTARAGRRGRAVAMVTQYDVALLQRIEVLVGRKMEKCEDVREEEVVKLLNPVAKATRAAKMRLMEVGFDFEVEEHLRRKKRDRKERYQRKRNRVAREGG 520
            MVSLFA+SS    KA KKRPR       K G         APA+        +         V+E  + A    LSSS WTQLGLA WIQ AC  MGFKRPTPVQE+CIPS+LQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYG+FGLVLTPTRELAIQI+EQFQALGAPL LRH VVIGG SMV Q+VELARRPH+VVATPGRLWDHLRGA PPDLSK  FLVLDEADRLFCDGFE+HLA IL AM HPRRQTLLFSATMT++L++LK LTRVQPVLFDLT+ R LP+SLQ++YLF+PAQVKMCYL+ LL+K+LL   + T               S T+  VKS ++FVGTCQRCQEV EV++E+GL AVSLHSVLSQKRRLA+LGKFKSSLV+VLVSTDVASRGLDIP+V LV+N+DLPR+ +DY+HRVGRTARAGR GRAV+MVTQYDVALLQ +E + GRKM  CE+V EEEVV+LLNPVAKATRAA+MRLMEVGFD +V EHL RKKR +K+          +EGG
Sbjct:    1 MVSLFATSSKVLRKASKKRPRSVVEEEAKVG--------TAPAVG------GSQLKGVGRESVQEAGVDAGSDSLSSSCWTQLGLAPWIQGACNAMGFKRPTPVQEQCIPSILQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGVFGLVLTPTRELAIQIAEQFQALGAPLGLRHCVVIGGESMVQQAVELARRPHVVVATPGRLWDHLRGAAPPDLSKATFLVLDEADRLFCDGFEQHLAGILAAMRHPRRQTLLFSATMTNALKDLKRLTRVQPVLFDLTRARALPASLQEEYLFVPAQVKMCYLIRLLQKLLLGVGTETDSVRGRRGAKGAGDESGTAGPVKSAMVFVGTCQRCQEVAEVLLEAGLTAVSLHSVLSQKRRLAALGKFKSSLVRVLVSTDVASRGLDIPDVGLVLNYDLPRLSTDYIHRVGRTARAGRYGRAVSMVTQYDVALLQGVEAVTGRKMPACEEVTEEEVVRLLNPVAKATRAARMRLMEVGFDEQVHEHLERKKRGKKDXXXXXXXAGKKEGG 520          
BLAST of NO02G01870 vs. NCBI_GenBank
Match: CBJ31567.1 (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 470.7 bits (1210), Expect = 5.900e-129
Identity = 273/538 (50.74%), Postives = 354/538 (65.80%), Query Frame = 0
Query:    7 SSSSTTKAG---KKRPRPTTTATEKDGAFVVSKTPAAPALSPDPCTDATDAAVSPSAEVEEVALGASVAFLSSSSWTQLGLAAWIQRACTTMGFKRPTPVQEKCIPSVLQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGIFGLVLTPTRELAIQISEQFQALGAPLNLRHTVVIGGVSMVHQSVELARRPHIVVATPGRLWDHLRGAVPPDLSKCRFLVLDEADRLFCDGFEKHLAAILGAMTHPRRQTLLFSATMTHSLENLKSLTRVQPVLFDLTKERTLPSSLQQQYLFMPAQVKMCYLVCLLRKVLLPN-----------KSATSSSTSSD-----------------VKSVIIFVGTCQRCQEVTEVMIESGLAAVSLHSVLSQKRRLASLGKFKSSLVKVLVSTDVASRGLDIPEVDLVVNFDLPRVPSDYVHRVGRTARAGRRGRAVAMVTQYDVALLQRIEVLVGRKMEKCEDVREEEVVKLLNPVAKATRAAKMRLMEVGFDFEVEEHLRRKKRDRKERYQRKRNR 514
            ++S TTKAG      P  +   T + G            + P+    A+  + +  +   EVA   +V     +++  LGL  W+  AC  MGF+RPTPVQ  CIP+VL+G+DV+GCAETGSGKTAAFALP+LH LS+DPYG+F +VLTPTRELA+QISEQF ALGA + LRHTVVIGGV ++ QS+ L+ RPH+VVATPGRL DHL+G   P L+KCR+LVLDEADRL    FE  L  I   + +  RQTLLFSATMT +LE L++L    PV +DLTK+ T+P +L QQYLFMP Q+K C++V  L  +   N           KS   +    D                  +SV+IFV  C++CQE++E ++E G+    LHS+L Q+RR A+LGKFKS   KVL+STDVASRGLDIP VDLV+NFD+PRV +DYVHRVGRTARAGRRGRAV++V+QYD+ L+  IE   G  +  C +V E++V+KLLN VAKA+R A+MRLME GFD   E     K+R+ ++R  +   R
Sbjct:   41 AASKTTKAGTGDSDVPGGSQATTSRGGK---GSRENGHDVDPNLSAGASHPSAADGSRKAEVAAEGAV-LEEEATFESLGLCDWLLTACKAMGFRRPTPVQRHCIPAVLEGKDVLGCAETGSGKTAAFALPILHELSKDPYGVFAVVLTPTRELAVQISEQFGALGALMGLRHTVVIGGVGILEQSLALSGRPHVVVATPGRLRDHLQGPAAPALAKCRYLVLDEADRLLAPTFEGELPCIPKTLPN-SRQTLLFSATMTSNLEALEALALTNPVKYDLTKKATVPKTLTQQYLFMPRQMKTCFVVQTLNMLASDNLWSDPADRKTRKSRGGAGGLHDNPEADEGQEGTGDGDGRARSVMIFVSKCRKCQELSETLVELGVDCTPLHSLLGQRRRTAALGKFKSQQTKVLISTDVASRGLDIPAVDLVINFDVPRVATDYVHRVGRTARAGRRGRAVSLVSQYDIELVHNIEQYTGTPLGLCPEVEEDDVLKLLNQVAKASRVARMRLMEQGFD---ERETSIKERNSRQRESKGEGR 570          
BLAST of NO02G01870 vs. NCBI_GenBank
Match: XP_012193990.1 (hypothetical protein SPRG_00506 [Saprolegnia parasitica CBS 223.65] >KDO35752.1 hypothetical protein SPRG_00506 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 433.3 bits (1113), Expect = 1.000e-117
Identity = 235/473 (49.68%), Postives = 321/473 (67.86%), Query Frame = 0
Query:   51 ATDAAVSPSAEVEEVALGASVAFLSSSSWTQLGLAAWIQRACTTMGFKRPTPVQEKCIPSVLQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGIFGLVLTPTRELAIQISEQFQALGAPLNLRHTVVIGGVSMVHQSVELARRPHIVVATPGRLWDHLRGAVPPDLSKCRFLVLDEADRLFCDGFEKHLAAILGAMTHPRRQTLLFSATMTHSLENLKSLTRVQPVLFDLTKERTLPSSLQQQYLFMPAQVKMCYLVCLLRKVL---LPNKSATSSS--------------TSSDVKSVIIFVGTCQRCQEVTEVMIESGLAAVSLHSVLSQKRRLASLGKFKSSLVKVLVSTDVASRGLDIPEVDLVVNFDLPRVPSDYVHRVGRTARAGRRGRAVAMVTQYDVALLQRIEVLVGRKMEKCED-VREEEVVKLLNPVAKATRAAKMRLMEVGFDFEVEEHLRRKKRDRKE 506
            A + AV+ + +   V   A V     ++++ LGL  W+   CT +G  +PTPVQ  CIP +L GRDV+GCA+TGSGKTAAFALP+LH L ++ YG F LVLTPTRELA QI EQFQALG+ ++LR  VV+GGV M+ Q++ L  RPH++VATPGRL DH+    PP+L   ++LVLDEADRL    F K LA +L  M    RQTLLFSATMT  L++L+++    P  FD T   T  S L+Q YLF+PAQ+K  YL+ L+ K++   +P++ AT  S               +   +S+++FV TC+ CQ V E+ +E  L  V LHS++ Q RRLA+LGKFKS L +VL+ TDVASRGLDIPEV  V+NFDLPR   DY+HRVGRTARAGR+G ++++VTQ+D+ LLQ IE ++ + ++  E+   E EV+K+LN V  ATR AKM++ E GFD +V++  +++K+  K+
Sbjct:   13 AVEPAVAAATDDALVPATAKVTPSILTTFSDLGLDPWLVTKCTLLGLHKPTPVQVNCIPEILAGRDVLGCAQTGSGKTAAFALPILHTLGKEMYGPFALVLTPTRELAFQIGEQFQALGSGISLRSCVVVGGVDMMTQALALQERPHVIVATPGRLHDHMLRPNPPNLKLIKYLVLDEADRLLSSTFSKDLAFLLDRMGSSSRQTLLFSATMTADLKDLEAVALTNPFRFDATPSATTVSQLKQSYLFVPAQIKTTYLMYLMSKLVDDSVPDEPATKKSFKGKKHLPIAIPDAPTDKTESMVVFVATCKSCQLVAEIALELELPCVVLHSMMGQSRRLAALGKFKSGLARVLICTDVASRGLDIPEVTHVINFDLPRDADDYIHRVGRTARAGRKGTSISIVTQHDIELLQNIEKVIEKPLDNYEEHAPETEVLKMLNDVTTATRVAKMKMTEHGFDDKVKQRQQQRKKQIKK 485          
BLAST of NO02G01870 vs. NCBI_GenBank
Match: OQS01341.1 (DEAD/DEAH box RNA helicase [Achlya hypogyna])

HSP 1 Score: 428.7 bits (1101), Expect = 2.600e-116
Identity = 225/444 (50.68%), Postives = 311/444 (70.05%), Query Frame = 0
Query:   77 SSWTQLGLAAWIQRACTTMGFKRPTPVQEKCIPSVLQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGIFGLVLTPTRELAIQISEQFQALGAPLNLRHTVVIGGVSMVHQSVELARRPHIVVATPGRLWDHLRGAVPPDLSKCRFLVLDEADRLFCDGFEKHLAAILGAMTHPRRQTLLFSATMTHSLENLKSLTRVQPVLFDLTKERTLPSSLQQQYLFMPAQVKMCYLVCLLRKVL-------LPNKSATSS--------STSSDVKSVIIFVGTCQRCQEVTEVMIESGLAAVSLHSVLSQKRRLASLGKFKSSLVKVLVSTDVASRGLDIPEVDLVVNFDLPRVPSDYVHRVGRTARAGRRGRAVAMVTQYDVALLQRIEVLVGRKMEKCE-DVREEEVVKLLNPVAKATRAAKMRLMEVGFDFEVEEHLRRKKRDRK 505
            +++  LGL  W+   C+ +G  +PTPVQ  CIP +L GRDV+GCA+TGSGKTAAFALP+LH L+++ +G F LVLTPTRELA QI EQFQALG+ ++LR  VV+GGV M+ Q++ L  RPH+++ATPGRL DH+  A PP+L   +++VLDEADRL    F K LA +L AM    RQTLLFSATMT  L++L+++    P  FD T   T  + L+Q YLF+PAQ+K  YL+ L+ K++        P K+  S         +++   +S+++FV TC+ CQ V E+ +E  L  V LHS++ Q RRLA+LGKFKS L +VL+ TDVASRGLDIPEV  V+NFDLPR   DY+HRVGRTARAGRRG ++++VTQ+D+ LLQ IE  +G+ ++  E +  E EV+K+LN V  ATR AKM++ E GFD ++++   ++++ R+
Sbjct:   39 TTFADLGLDPWLVAKCSLLGLHKPTPVQVNCIPEILAGRDVLGCAQTGSGKTAAFALPILHNLAKEMFGPFALVLTPTRELAFQIGEQFQALGSGISLRTCVVVGGVDMMTQALALQERPHVIIATPGRLRDHMLRANPPNLKLVQYVVLDEADRLLSAAFSKDLAFLLDAMGTSTRQTLLFSATMTADLKDLEAVALTNPYRFDATPSATTVAQLKQSYLFVPAQIKTTYLMYLMSKLVDDTPTEDKPVKAKKSKKAPPAVVPTSAEKTESMVVFVATCKMCQLVAEIALELELPCVVLHSMMGQARRLAALGKFKSGLARVLICTDVASRGLDIPEVTHVLNFDLPRDADDYIHRVGRTARAGRRGTSISIVTQHDIELLQNIEAAIGKPLDNYEAEAPEAEVLKMLNDVTTATRVAKMKMTEHGFDDKLKQRQLQRQKARQ 482          
BLAST of NO02G01870 vs. NCBI_GenBank
Match: GAX98757.1 (Hypothetical protein PINS_006601 [Pythium insidiosum])

HSP 1 Score: 427.6 bits (1098), Expect = 5.700e-116
Identity = 253/530 (47.74%), Postives = 352/530 (66.42%), Query Frame = 0
Query:   15 GKKRPRPTTTATEKDGAFVVSKTPAAPALSPDPCTDATDAAVSPSAEV----EEVALGASVAFLSSSSWTQLGLAAWIQRACTTMGFKRPTPVQEKCIPSVLQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGIFGLVLTPTRELAIQISEQFQALGAPLNLRHTVVIGGVSMVHQSVELARRPHIVVATPGRLWDHLRGAVPPDLSKCRFLVLDEADRLFCDGFEKHLAAILGAMTHPRRQTLLFSATMTHSLENLKSLTRVQPVLFDLTKERTLPSSLQQQYLFMPAQVKMCYLVCLL-----------------------RKVLLPNKSATSSSTSSDVKSVIIFVGTCQRCQEVTEVMIESGLAAVSLHSVLSQKRRLASLGKFKSSLVKVLVSTDVASRGLDIPEVDLVVNFDLPRVPSDYVHRVGRTARAGRRGRAVAMVTQYDVALLQRIEVLVGRKMEKCE-DVREEEVVKLLNPVAKATRAAKMRLMEVGFDFEVEEHLRRKKRDRKERYQRKRNRVAR 517
            GK+R   +   T       V+ TP++ A +  P + AT +A +   +     E+V + +S+A     S+  LGL  WI + C  +G + PTPVQ  CIP +L+GRDV+GCA+TGSGKTAAFALP+LH LS+DPYG F +VLTPTRELA QI++QF   G+   +R  VV+GGV M+ Q+++L  RPH+++ATPGRL DHL    PP+L+  +F+VLDEADRL    F K L  IL  +   +RQTLLFSATMT +L+ L+ +       FD T      ++L+Q YLF+P QVKM YL+ LL                       + + LP+ S+T+S++S  +  ++IFV TC+ C+ V E+  E G   V+LHSV+SQ RRLA+LGKFKS L +VLVSTDVASRGLDIPEVD+V+NFDLPR   DY+HRVGRTARAGR+G+++++VTQ+D+ALLQ IE  +G+KM+  E    E++V+KLLN V  ATR AKMRL E G D +V+   + K+ ++ E+ ++K++ ++R
Sbjct:    6 GKRRRAESKQTTS------VALTPSSTAHAALPQSVATSSAHANDDDAVDSNEKVLVDSSLAPSPLLSFLDLGLDPWIVKKCELVGIRXPTPVQANCIPPILRGRDVLGCAQTGSGKTAAFALPILHELSKDPYGPFAVVLTPTRELAFQIADQFNVFGSSFGVRCAVVVGGVDMLKQALQLQERPHVIIATPGRLHDHLLRPNPPNLALVKFVVLDEADRLLDVSFAKDLGFILDRLP-TKRQTLLFSATMTANLDRLEDMALSNVFKFDATPAVKTVTTLKQHYLFIPLQVKMTYLMYLLSMFQPQDDAEPQEDARKSKKPRTKGLALPDISSTASASSQPL--MMIFVSTCKMCELVGEIGNEMGTKCVTLHSVMSQNRRLAALGKFKSGLSRVLVSTDVASRGLDIPEVDIVINFDLPRDADDYIHRVGRTARAGRKGQSISLVTQHDIALLQNIEAKIGKKMDDMEAQAPEKDVLKLLNXVTTATRVAKMRLTERGXDDKVQSR-KAKRLEQLEKKKKKQHIMSR 525          
BLAST of NO02G01870 vs. NCBI_GenBank
Match: XP_008607217.1 (hypothetical protein SDRG_03362 [Saprolegnia diclina VS20] >EQC39156.1 hypothetical protein SDRG_03362 [Saprolegnia diclina VS20])

HSP 1 Score: 425.6 bits (1093), Expect = 2.200e-115
Identity = 238/487 (48.87%), Postives = 320/487 (65.71%), Query Frame = 0
Query:   38 PAAPALSPDPCTDATDAAVSPSAEVEEVALGASVAFLSSSSWTQLGLAAWIQRACTTMGFKRPTPVQEKCIPSVLQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGIFGLVLTPTRELAIQISEQFQALGAPLNLRHTVVIGGVSMVHQSVELARRPHIVVATPGRLWDHLRGAVPPDLSKCRFLVLDEADRLFCDGFEKHLAAILGAMTHPRRQTLLFSATMTHSLENLKSLTRVQPVLFDLTKERTLPSSLQQQYLFMPAQVKMCYLVCLLRKVL---LPNKSATSSS---------------TSSDVKSVIIFVGTCQRCQEVTEVMIESGLAAVSLHSVLSQKRRLASLGKFKSSLVKVLVSTDVASRGLDIPEVDLVVNFDLPRVPSDYVHRVGRTARAGRRGRAVAMVTQYDVALLQRIEVLVGRKMEKCE-DVREEEVVKLLNPVAKATRAAKMRLMEVGFDFEVEEHLRRKKRDRKE 506
            PAA A + D    AT A V+PS                 ++++ LGL  W+   CT +G  +PTPVQ  CIP +L GRDV+GCA+TGSGKTAAFALP+LH L ++ YG F LVLTPTRELA QI EQFQALG+ ++LR  VV+GGV M+ Q++ L  RPH++VATPGRL DH+    PP+L   ++LVLDEADRL    F K LA +L  M    RQTLLFSATMT  L++L+++    P  FD T   T  S L+Q YLF+PAQ+K  YL+ L+ K++   +P + A   S                    +S+++FV TC+ CQ V E+ +E  L  V LHS++ Q RRLA+LGKFKS L +VL+ TDVASRGLDIPEV  V+NFDLPR   DY+HRVGRTARAGR+G ++++VTQ+D+ LLQ IE ++ + ++  E    E EV+K+LN V  ATR AKM++ E GFD ++++  +++K+  K+
Sbjct:   16 PAAAAATDDVLVPAT-AKVTPSI---------------LTTFSDLGLDPWLVTKCTLLGLHKPTPVQVNCIPEILAGRDVLGCAQTGSGKTAAFALPILHTLGKEMYGPFALVLTPTRELAFQIGEQFQALGSGISLRSCVVVGGVDMMTQALALQERPHVIVATPGRLHDHMLRPNPPNLKLIKYLVLDEADRLLSSTFSKDLAFLLDRMGSSSRQTLLFSATMTADLKDLEAVALTNPFRFDATPSATTVSQLKQSYLFVPAQIKTTYLMYLMSKLVDDSVPEEPAKKKSFKGKKHLPIAIPEADGKDKTESMVVFVATCKSCQLVAEIALELELPCVVLHSMMGQSRRLAALGKFKSGLARVLICTDVASRGLDIPEVTHVINFDLPRDADDYIHRVGRTARAGRKGTSISIVTQHDIELLQNIEKVIEKPLDNYEAHAPETEVLKMLNDVTTATRVAKMKMTEHGFDDKLKQRQQQRKKHTKK 486          
BLAST of NO02G01870 vs. NCBI_GenBank
Match: OQS00111.1 (DEAD/DEAH box RNA helicase [Thraustotheca clavata])

HSP 1 Score: 423.3 bits (1087), Expect = 1.100e-114
Identity = 228/468 (48.72%), Postives = 313/468 (66.88%), Query Frame = 0
Query:   62 VEEVALGASVAFLSS--------SSWTQLGLAAWIQRACTTMGFKRPTPVQEKCIPSVLQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGIFGLVLTPTRELAIQISEQFQALGAPLNLRHTVVIGGVSMVHQSVELARRPHIVVATPGRLWDHLRGAVPPDLSKCRFLVLDEADRLFCDGFEKHLAAILGAMTHPRRQTLLFSATMTHSLENLKSLTRVQPVLFDLTKERTLPSSLQQQYLFMPAQVKMCYLVCLLRKVL-------------------LPNKSATSSSTSSDVKSVIIFVGTCQRCQEVTEVMIESGLAAVSLHSVLSQKRRLASLGKFKSSLVKVLVSTDVASRGLDIPEVDLVVNFDLPRVPSDYVHRVGRTARAGRRGRAVAMVTQYDVALLQRIEVLVGRKMEKCED-VREEEVVKLLNPVAKATRAAKMRLMEVGFDFEVEEHLRRKKR 502
            VEE +  ASV  +++        +++  LGL  W+   C+ +G  +PTPVQ  CIP +L GRDV+GCA+TGSGKTAAFALP+LH L+++ YG F LVLTPTRELA QI +QFQALG+ ++LR  VV+GGV M+ Q++ L  RPH+++ATPGRL DH+  A PP+L   ++LVLDEADRL    F K L  +L +M   +RQTLLFSATMT  L++L+++    P  FD T   T  S L+Q YLF+PAQ+K  YL+ L+ K++                      +      T    +S+++FV TC+ CQ V E+ +E  L  V LHS++ Q RRLASLGKFKS + +VL+ TDVASRGLDIP+V  V+NFDLPR   DY+HRVGRTARAGR+G ++++VTQ+D+ LLQ IE  + + ++  E+ V E EV+K+L  V  ATR AKM++ E GFD +V++  R+K +
Sbjct:   19 VEETSSIASVPVVAAKVSTPSILTTFGDLGLDPWLVSKCSLLGLHKPTPVQVNCIPEILAGRDVLGCAQTGSGKTAAFALPILHNLAKEMYGPFALVLTPTRELAFQIGQQFQALGSGISLRSCVVVGGVDMMTQALALQDRPHVIIATPGRLHDHMLRANPPNLKLVQYLVLDEADRLLSATFSKDLTFLLDSMGTTQRQTLLFSATMTADLKDLEAVALTNPYRFDATPTATTVSQLKQSYLFVPAQIKTTYLMYLMSKLIDDSXXXXXXXXXXXXXXXXXSKELILPDPTKDKTESMVVFVATCKMCQLVAEIALELELPCVVLHSMMGQSRRLASLGKFKSGIARVLICTDVASRGLDIPDVTHVINFDLPRDADDYIHRVGRTARAGRKGTSISIVTQHDIELLQNIEKAIEKPLDNYEENVPEAEVLKMLKDVTTATRVAKMKMTERGFDDKVKQRQRQKSK 486          
BLAST of NO02G01870 vs. NCBI_GenBank
Match: XP_009835156.1 (hypothetical protein H257_10342 [Aphanomyces astaci] >ETV75522.1 hypothetical protein H257_10342 [Aphanomyces astaci])

HSP 1 Score: 421.4 bits (1082), Expect = 4.100e-114
Identity = 243/496 (48.99%), Postives = 320/496 (64.52%), Query Frame = 0
Query:   29 DGAFVVSKTPAAPALSPDPCTDATDAAVSPSAEVEEVALGASVAFLSSSSWTQLGLAAWIQRACTTMGFKRPTPVQEKCIPSVLQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGIFGLVLTPTRELAIQISEQFQALGAPLNLRHTVVIGGVSMVHQSVELARRPHIVVATPGRLWDHLRGAVPPDLSKCRFLVLDEADRLFCDGFEKHLAAILGAMTHPRRQTLLFSATMTHSLENLKSLTRVQPVLFDLTKERTLPSSLQQQYLFMPAQVKMCYLVCLLRKVLL---PNKSATSSS----------------TSSDVKSVIIFVGTCQRCQEVTEVMIESGLAAVSLHSVLSQKRRLASLGKFKSSLVKVLVSTDVASRGLDIPEVDLVVNFDLPRVPSDYVHRVGRTARAGRRGRAVAMVTQYDVALLQRIEVLVGRKMEKCED-VREEEVVKLLNPVAKATRAAKMRLMEVGFDFEVEEHLRRKKRDRK 505
            D A +V  +  A     D        A +P+   E  +  + +     +++  LGL  WI   C  +G  +PTPVQ  CIP +L GRDVMGCA+TGSGKTAAFALP+LH L+++ YG F LVLTPTRELA QI+EQFQALG+ L+LR  VV+GGV M+ Q++ L +RPH++VATPGRL DH+  A PP+L   ++LVLDEADRL    F K LA +LG       QTLLFSATMT  L +L+ +    P  FD T   T  ++L+Q YLF+PAQ+K  YL+ LL+ ++    P++S+ S                   +S  +S+I+FV TC+ CQ + E+ IE  L  V+LH+V+ Q RRLA+LGKFK+   ++L+STDVASRGLDIP+V  VVN+DLPR   DY+HRVGRTARAGR G A+++VTQ+D+ LL  IE  VG+ +   ED   E +V+KLLN V  ATR AKMRL E GFD  V    R+KK  +K
Sbjct:   16 DTAPLVPTSKDAAKKEEDVSVSTNIVAAAPTPTTEPTSTTSIL-----TTFADLGLDPWIAAKCKLLGLIKPTPVQANCIPPILAGRDVMGCAQTGSGKTAAFALPILHDLAKEIYGPFALVLTPTRELAYQIAEQFQALGSGLSLRTCVVVGGVDMMTQALTLQQRPHVLVATPGRLRDHMLRANPPNLKLIKYLVLDEADRLLTATFAKDLAYLLGTSVGTSHQTLLFSATMTADLTSLEKMAMTNPFRFDATPTATTVTTLKQSYLFVPAQIKPTYLLFLLQTLVHIDDPDESSPSKKPKKHRRQEVVGPVAMPNNSSSQSMIVFVATCRMCQLLCEIAIEFNLPVVALHAVMGQSRRLAALGKFKAGTARILISTDVASRGLDIPDVSTVVNYDLPRDADDYIHRVGRTARAGRHGSAISLVTQHDIQLLHNIEAKVGKPLANYEDHAPEPQVLKLLNDVTTATRVAKMRLTEHGFDDRVA--ARKKKWTKK 504          
BLAST of NO02G01870 vs. NCBI_GenBank
Match: XP_008864595.1 (hypothetical protein H310_02751 [Aphanomyces invadans] >ETW06520.1 hypothetical protein H310_02751 [Aphanomyces invadans])

HSP 1 Score: 416.8 bits (1070), Expect = 1.000e-112
Identity = 244/489 (49.90%), Postives = 323/489 (66.05%), Query Frame = 0
Query:   40 APALSPDPCTDATDAAVSPSAEVEEVALGASVAFLSS--SSWTQLGLAAWIQRACTTMGFKRPTPVQEKCIPSVLQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGIFGLVLTPTRELAIQISEQFQALGAPLNLRHTVVIGGVSMVHQSVELARRPHIVVATPGRLWDHLRGAVPPDLSKCRFLVLDEADRLFCDGFEKHLAAILGAMTHPRRQTLLFSATMTHSLENLKSLTRVQPVLFDLTKERTLPSSLQQQYLFMPAQVKMCYLVCLLRKVLLPNKS--------------------ATSSSTSSD-VKSVIIFVGTCQRCQEVTEVMIESGLAAVSLHSVLSQKRRLASLGKFKSSLVKVLVSTDVASRGLDIPEVDLVVNFDLPRVPSDYVHRVGRTARAGRRGRAVAMVTQYDVALLQRIEVLVGRKMEKCED-VREEEVVKLLNPVAKATRAAKMRLMEVGFDFEVEEHLRRKKRDRK 505
            AP L P     A D A      V EV   ++ A  +S  +++  LGL  WI   C  +G  +PTPVQ  CIP +L GRDVMGCA+TGSGKTAAFALP+LH L+++ YG F +VLTPTRELA QI+EQFQALG+ L+LR  VV+GGV M+ Q++ L +RPH++VATPGRL DH+  A PP+L   ++LVLDEADRL    F K L  +L  +     QTLLFSATMT  L +L+ +    P  FD T   T  + L+Q YLF+PAQ+K  YL+ L++K++  + S                    A +++TS+D  KS+++FV TC+ CQ + E+  E  L  V+LH+V+ Q RRLA+LGKFKS L ++L+STDVASRGLDIP+V  V+N+DLPR   DY+HRVGRTARAGR G A+++VTQ+D+ALL  +E  VG+ +   ED   E +V+KLLN V  ATR +KMRL E GFD  V+   R+KK  +K
Sbjct:   15 APPLQP-TSKHADDGA------VVEVPASSTTADPTSILTTFADLGLDPWIAAKCKLLGLHKPTPVQAHCIPPILAGRDVMGCAQTGSGKTAAFALPILHDLAKEIYGPFAVVLTPTRELAYQIAEQFQALGSGLSLRTCVVVGGVDMMTQALSLQQRPHVLVATPGRLRDHMLRANPPNLKLIKYLVLDEADRLLNATFAKDLEFLLDTV-GTSHQTLLFSATMTADLASLEKMAMTNPFRFDATPTATTVTQLKQSYLFVPAQIKPTYLMYLMQKLIDVDDSSVDASEKVKKARRRHDRLEAALAATTSADRSKSMVVFVATCRMCQLMCEIATEFRLPVVALHAVMGQSRRLAALGKFKSGLARILISTDVASRGLDIPDVTHVINYDLPRDADDYIHRVGRTARAGRHGTAISLVTQHDIALLHNVEAKVGKPLTNYEDEAPEADVLKLLNDVTTATRVSKMRLTEHGFDDRVQ--ARKKKWSKK 493          
BLAST of NO02G01870 vs. NCBI_GenBank
Match: XP_009529632.1 (hypothetical protein PHYSODRAFT_504921 [Phytophthora sojae] >EGZ15883.1 hypothetical protein PHYSODRAFT_504921 [Phytophthora sojae])

HSP 1 Score: 413.3 bits (1061), Expect = 1.100e-111
Identity = 226/426 (53.05%), Postives = 299/426 (70.19%), Query Frame = 0
Query:   78 SWTQLGLAAWIQRACTTMGFKRPTPVQEKCIPSVLQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGIFGLVLTPTRELAIQISEQFQALGAPLNLRHTVVIGGVSMVHQSVELARRPHIVVATPGRLWDHLRGAVPPDLSKCRFLVLDEADRLFCDGFEKHLAAILGAMTHPRRQTLLFSATMTHSLENLKSLTRVQPVL-FDLTKERTLPSSLQQQYLFMPAQVKMCYLVCLLRKVLLPNKSATSSSTSSDVKSVIIFVGTCQRCQEVTEVMIESGLAAVSLHSVLSQKRRLASLGKFKSSLVKVLVSTDVASRGLDIPEVDLVVNFDLPRVPSDYVHRVGRTARAGRRGRAVAMVTQYDVALLQRIEVLVGRKMEKCE-DVREEEVVKLLNPVAKATRAAKMRLMEVGFDFEVEEHLRRKKR 502
            S+  LG+  W+ + C  +G + PTPVQ  CIP +L GRDV+GCA+TGSGKTAAFALP+LH LS+DPYG + LVLTPTRELA QI++QF A G+ + +R  V++GGV M+ QS+ L +RPHI+VATPGR  DHL    PP++S  +++VLDEADRL    F K L+ I   +   +RQTLLFSATMT +L+ L+          FD T      ++L+Q YLF+PAQ K         + L     A +SS+   ++S++IFV TC+ C+ V E+  E G   V+LHS++SQ RRLA+LGKFKS L  +L+STDVASRGLDIPEVD+V+NFDLPR   DY+HRVGRTARAGR G+A+++VTQ+D+ LLQ IE  VG+KM+  E +  E++V++LLN V  ATR AKM+L E GFD +V  H R+ KR
Sbjct:    4 SFLNLGVDPWLVKRCELLGIRHPTPVQVHCIPPILSGRDVIGCAQTGSGKTAAFALPILHTLSKDPYGPYALVLTPTRELAFQIADQFNAFGSSMAVRCAVIVGGVDMLKQSLTLQQRPHIIVATPGRFRDHLLRVEPPNISLVKYVVLDEADRLLDVSFAKDLSFIFDKLP-AKRQTLLFSATMTANLDRLEQTALSDDAFRFDTTPSVKTVATLKQFYLFIPAQGKK-------DQDLEQLLEAATSSSKRQLRSMMIFVSTCKMCELVGEIGNELGTKCVTLHSMMSQNRRLAALGKFKSGLSHILISTDVASRGLDIPEVDVVLNFDLPRDADDYIHRVGRTARAGRSGQAISLVTQHDIELLQNIEAKVGKKMDDYEAEAPEKKVLELLNDVTTATRVAKMKLTERGFDDKV--HARKAKR 419          
The following BLAST results are available for this feature:
BLAST of NO02G01870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM30521.17.600e-19369.66atp-dependent rna helicase ddx49-like protein [Nan... [more]
CBJ31567.15.900e-12950.74DEAD box helicase [Ectocarpus siliculosus][more]
XP_012193990.11.000e-11749.68hypothetical protein SPRG_00506 [Saprolegnia paras... [more]
OQS01341.12.600e-11650.68DEAD/DEAH box RNA helicase [Achlya hypogyna][more]
GAX98757.15.700e-11647.74Hypothetical protein PINS_006601 [Pythium insidios... [more]
XP_008607217.12.200e-11548.87hypothetical protein SDRG_03362 [Saprolegnia dicli... [more]
OQS00111.11.100e-11448.72DEAD/DEAH box RNA helicase [Thraustotheca clavata][more]
XP_009835156.14.100e-11448.99hypothetical protein H257_10342 [Aphanomyces astac... [more]
XP_008864595.11.000e-11249.90hypothetical protein H310_02751 [Aphanomyces invad... [more]
XP_009529632.11.100e-11153.05hypothetical protein PHYSODRAFT_504921 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006815NSK006815Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01870.1NO02G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574077gene_771Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g16gene192Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01870.1NO02G01870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01870 ID=NO02G01870|Name=NO02G01870|organism=Nannochloropsis oceanica|type=gene|length=1569bp
ATGGTCTCTCTTTTCGCGTCGTCATCGTCCACGACCAAAGCAGGCAAGAA
GCGGCCTCGCCCTACCACCACAGCGACAGAGAAGGATGGCGCTTTTGTTG
TCTCGAAGACACCTGCTGCGCCAGCGCTAAGCCCGGATCCGTGCACGGAT
GCCACCGACGCGGCTGTCTCTCCATCTGCCGAGGTAGAGGAGGTTGCTTT
AGGCGCTAGTGTGGCTTTCCTGTCCTCAAGCAGCTGGACACAGCTAGGTC
TAGCTGCGTGGATCCAGCGGGCTTGTACGACCATGGGTTTTAAGCGTCCG
ACGCCGGTACAAGAAAAGTGCATCCCCTCCGTGTTGCAAGGGCGAGACGT
GATGGGGTGCGCCGAGACGGGGTCGGGCAAGACGGCAGCATTTGCCTTGC
CCATGCTTCATCGTCTGTCCGAGGACCCCTATGGAATCTTTGGCTTGGTC
CTGACACCTACAAGGGAGCTGGCTATTCAGATTTCTGAGCAATTCCAGGC
TTTGGGGGCGCCGTTGAATTTGAGGCATACAGTGGTGATCGGCGGGGTTA
GCATGGTGCATCAATCGGTTGAGTTGGCGCGGCGCCCACACATAGTGGTG
GCGACACCTGGGAGGCTTTGGGATCATTTGCGAGGCGCAGTCCCGCCTGA
TTTGAGCAAGTGCCGGTTTTTGGTGCTGGATGAAGCGGATCGGTTGTTTT
GTGATGGATTTGAGAAGCATTTAGCGGCTATCCTGGGAGCAATGACGCAC
CCCCGGAGACAAACATTGTTATTCAGTGCCACAATGACTCATTCGTTGGA
AAATTTGAAGAGCTTGACGCGCGTACAACCCGTTTTATTCGATCTGACAA
AAGAGCGGACGTTGCCTTCATCGTTACAGCAACAGTATCTCTTCATGCCC
GCGCAAGTCAAGATGTGCTACCTCGTTTGTCTCCTCCGAAAGGTTCTCCT
CCCCAACAAGAGTGCCACCAGCAGCAGCACCTCCAGTGATGTGAAATCGG
TCATTATCTTCGTCGGGACCTGTCAACGCTGCCAGGAAGTTACCGAGGTA
ATGATAGAGTCAGGCCTAGCCGCCGTGTCTCTCCACTCTGTCTTATCACA
AAAAAGACGCTTGGCGTCTTTAGGGAAGTTTAAGAGTAGTCTTGTCAAGG
TTTTGGTGAGTACGGACGTGGCAAGCAGGGGCTTGGATATCCCTGAGGTT
GATTTGGTGGTCAATTTTGACTTGCCGCGGGTGCCGTCTGATTACGTGCA
TCGGGTAGGTAGGACGGCGAGGGCGGGAAGAAGGGGGAGGGCAGTAGCGA
TGGTGACTCAGTATGATGTTGCCCTTTTGCAAAGGATTGAGGTGTTGGTG
GGGAGGAAGATGGAGAAGTGCGAGGATGTAAGGGAGGAGGAGGTGGTGAA
GCTGTTAAATCCTGTAGCGAAGGCGACGAGGGCCGCAAAGATGCGATTGA
TGGAGGTGGGCTTTGACTTCGAGGTGGAAGAGCATTTAAGGAGGAAAAAG
CGGGATAGGAAAGAGAGGTATCAGAGGAAGAGGAACAGGGTGGCGAGGGA
AGGGGGGGGAGAGAGTTGA
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protein sequence of NO02G01870.1

>NO02G01870.1-protein ID=NO02G01870.1-protein|Name=NO02G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MVSLFASSSSTTKAGKKRPRPTTTATEKDGAFVVSKTPAAPALSPDPCTD
ATDAAVSPSAEVEEVALGASVAFLSSSSWTQLGLAAWIQRACTTMGFKRP
TPVQEKCIPSVLQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGIFGLV
LTPTRELAIQISEQFQALGAPLNLRHTVVIGGVSMVHQSVELARRPHIVV
ATPGRLWDHLRGAVPPDLSKCRFLVLDEADRLFCDGFEKHLAAILGAMTH
PRRQTLLFSATMTHSLENLKSLTRVQPVLFDLTKERTLPSSLQQQYLFMP
AQVKMCYLVCLLRKVLLPNKSATSSSTSSDVKSVIIFVGTCQRCQEVTEV
MIESGLAAVSLHSVLSQKRRLASLGKFKSSLVKVLVSTDVASRGLDIPEV
DLVVNFDLPRVPSDYVHRVGRTARAGRRGRAVAMVTQYDVALLQRIEVLV
GRKMEKCEDVREEEVVKLLNPVAKATRAAKMRLMEVGFDFEVEEHLRRKK
RDRKERYQRKRNRVAREGGGES*
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Synonyms
Publications