NO02G01870.1, NO02G01870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01870.1
Unique NameNO02G01870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1569
Alignment locationchr2:539493..541061 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:539493..541061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G01870.1 vs.
Match: EWM30521.1 (atp-dependent rna helicase ddx49-like protein [Nannochloropsis gaditana])

HSP 1 Score: 692.6 bits (1786), Expect = 9.500e-196
Identity = 377/536 (70.34%), Postives = 428/536 (79.85%), Query Frame = 0 
Query:    1 MVSLFASSSSTT-KAGKKRPRPTTTATEKDGAFVVSKTPAAPALSPDPCTDATDAAVSPSAEVEEVALGASVAFLSSSSWTQLGLAAWIQRACTTMGFKRPTPVQEKCIPSVLQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGIFGLVLTPTRELAIQISEQFQALGAPLNLRHTVVIGGVSMVHQSVELARRPHIVVATPGRLWDHLRGAVPPDLSKCRFLVLDEADRLFCDGFEKHLAAILGAMTHPRRQTLLFSATMTHSLENLKSLTRVQPVLFDLTKERTLPSSLQQQYLFMPAQVKMCYLVCLLRKVLLPNKSAT--------------SSSTSSDVKSVIIFVGTCQRCQEVTEVMIESGLAAVSLHSVLSQKRRLASLGKFKSSLVKVLVSTDVASRGLDIPEVDLVVNFDLPRVPSDYVHRVGRTARAGRRGRAVAMVTQYDVALLQRIEVLVGRKMEKCEDVREEEVVKLLNPVAKATRAAKMRLMEVGFDFEVEEHLRRKKRDRKERYQRKRNRVAREGGGE 522
            MVSLFA+SS    KA KKRPR       K G         APA+           +V      +E  + A    LSSS WTQLGLA WIQ AC  MGFKRPTPVQE+CIPS+LQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYG+FGLVLTPTRELAIQI+EQFQALGAPL LRH VVIGG SMV Q+VELARRPH+VVATPGRLWDHLRGA PPDLSK  FLVLDEADRLFCDGFE+HLA IL AM HPRRQTLLFSATMT++L++LK LTRVQPVLFDLT+ R LP+SLQ++YLF+PAQVKMCYL+ LL+K+LL   + T               S T+  VKS ++FVGTCQRCQEV EV++E+GL AVSLHSVLSQKRRLA+LGKFKSSLV+VLVSTDVASRGLDIP+V LV+N+DLPR+ +DY+HRVGRTARAGR GRAV+MVTQYDVALLQ +E + GRKM  CE+V EEEVV+LLNPVAKATRAA+MRLMEVGFD +V EHL RKKR +K+R QRKR R  ++ GG+
Sbjct:    1 MVSLFATSSKVLRKASKKRPRSVVEEEAKVGT--------APAVGGSQLKGVGRESV------QEAGVDAGSDSLSSSCWTQLGLAPWIQGACNAMGFKRPTPVQEQCIPSILQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGVFGLVLTPTRELAIQIAEQFQALGAPLGLRHCVVIGGESMVQQAVELARRPHVVVATPGRLWDHLRGAAPPDLSKATFLVLDEADRLFCDGFEQHLAGILAAMRHPRRQTLLFSATMTNALKDLKRLTRVQPVLFDLTRARALPASLQEEYLFVPAQVKMCYLIRLLQKLLLGVGTETDSVRGRRGAKGAGDESGTAGPVKSAMVFVGTCQRCQEVAEVLLEAGLTAVSLHSVLSQKRRLAALGKFKSSLVRVLVSTDVASRGLDIPDVGLVLNYDLPRLSTDYIHRVGRTARAGRYGRAVSMVTQYDVALLQGVEAVTGRKMPACEEVTEEEVVRLLNPVAKATRAARMRLMEVGFDEQVHEHLERKKRGKKDR-QRKRRRAGKKEGGD 521
The following BLAST results are available for this feature:
BLAST of NO02G01870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30521.19.500e-19670.34atp-dependent rna helicase ddx49-like protein [Nan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01870NO02G01870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01870.1NO02G01870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01870.1.cds1NO02G01870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01870.1 ID=NO02G01870.1|Name=NO02G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp
ATGGTCTCTCTTTTCGCGTCGTCATCGTCCACGACCAAAGCAGGCAAGAA
GCGGCCTCGCCCTACCACCACAGCGACAGAGAAGGATGGCGCTTTTGTTG
TCTCGAAGACACCTGCTGCGCCAGCGCTAAGCCCGGATCCGTGCACGGAT
GCCACCGACGCGGCTGTCTCTCCATCTGCCGAGGTAGAGGAGGTTGCTTT
AGGCGCTAGTGTGGCTTTCCTGTCCTCAAGCAGCTGGACACAGCTAGGTC
TAGCTGCGTGGATCCAGCGGGCTTGTACGACCATGGGTTTTAAGCGTCCG
ACGCCGGTACAAGAAAAGTGCATCCCCTCCGTGTTGCAAGGGCGAGACGT
GATGGGGTGCGCCGAGACGGGGTCGGGCAAGACGGCAGCATTTGCCTTGC
CCATGCTTCATCGTCTGTCCGAGGACCCCTATGGAATCTTTGGCTTGGTC
CTGACACCTACAAGGGAGCTGGCTATTCAGATTTCTGAGCAATTCCAGGC
TTTGGGGGCGCCGTTGAATTTGAGGCATACAGTGGTGATCGGCGGGGTTA
GCATGGTGCATCAATCGGTTGAGTTGGCGCGGCGCCCACACATAGTGGTG
GCGACACCTGGGAGGCTTTGGGATCATTTGCGAGGCGCAGTCCCGCCTGA
TTTGAGCAAGTGCCGGTTTTTGGTGCTGGATGAAGCGGATCGGTTGTTTT
GTGATGGATTTGAGAAGCATTTAGCGGCTATCCTGGGAGCAATGACGCAC
CCCCGGAGACAAACATTGTTATTCAGTGCCACAATGACTCATTCGTTGGA
AAATTTGAAGAGCTTGACGCGCGTACAACCCGTTTTATTCGATCTGACAA
AAGAGCGGACGTTGCCTTCATCGTTACAGCAACAGTATCTCTTCATGCCC
GCGCAAGTCAAGATGTGCTACCTCGTTTGTCTCCTCCGAAAGGTTCTCCT
CCCCAACAAGAGTGCCACCAGCAGCAGCACCTCCAGTGATGTGAAATCGG
TCATTATCTTCGTCGGGACCTGTCAACGCTGCCAGGAAGTTACCGAGGTA
ATGATAGAGTCAGGCCTAGCCGCCGTGTCTCTCCACTCTGTCTTATCACA
AAAAAGACGCTTGGCGTCTTTAGGGAAGTTTAAGAGTAGTCTTGTCAAGG
TTTTGGTGAGTACGGACGTGGCAAGCAGGGGCTTGGATATCCCTGAGGTT
GATTTGGTGGTCAATTTTGACTTGCCGCGGGTGCCGTCTGATTACGTGCA
TCGGGTAGGTAGGACGGCGAGGGCGGGAAGAAGGGGGAGGGCAGTAGCGA
TGGTGACTCAGTATGATGTTGCCCTTTTGCAAAGGATTGAGGTGTTGGTG
GGGAGGAAGATGGAGAAGTGCGAGGATGTAAGGGAGGAGGAGGTGGTGAA
GCTGTTAAATCCTGTAGCGAAGGCGACGAGGGCCGCAAAGATGCGATTGA
TGGAGGTGGGCTTTGACTTCGAGGTGGAAGAGCATTTAAGGAGGAAAAAG
CGGGATAGGAAAGAGAGGTATCAGAGGAAGAGGAACAGGGTGGCGAGGGA
AGGGGGGGGAGAGAGTTGA
back to top

protein sequence of NO02G01870.1

>NO02G01870.1-protein ID=NO02G01870.1-protein|Name=NO02G01870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MVSLFASSSSTTKAGKKRPRPTTTATEKDGAFVVSKTPAAPALSPDPCTD
ATDAAVSPSAEVEEVALGASVAFLSSSSWTQLGLAAWIQRACTTMGFKRP
TPVQEKCIPSVLQGRDVMGCAETGSGKTAAFALPMLHRLSEDPYGIFGLV
LTPTRELAIQISEQFQALGAPLNLRHTVVIGGVSMVHQSVELARRPHIVV
ATPGRLWDHLRGAVPPDLSKCRFLVLDEADRLFCDGFEKHLAAILGAMTH
PRRQTLLFSATMTHSLENLKSLTRVQPVLFDLTKERTLPSSLQQQYLFMP
AQVKMCYLVCLLRKVLLPNKSATSSSTSSDVKSVIIFVGTCQRCQEVTEV
MIESGLAAVSLHSVLSQKRRLASLGKFKSSLVKVLVSTDVASRGLDIPEV
DLVVNFDLPRVPSDYVHRVGRTARAGRRGRAVAMVTQYDVALLQRIEVLV
GRKMEKCEDVREEEVVKLLNPVAKATRAAKMRLMEVGFDFEVEEHLRRKK
RDRKERYQRKRNRVAREGGGES*
back to top

mRNA from alignment at chr2:539493..541061+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01870.1 ID=NO02G01870.1|Name=NO02G01870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp|location=Sequence derived from alignment at chr2:539493..541061+ (Nannochloropsis oceanica)
ATGGTCTCTCTTTTCGCGTCGTCATCGTCCACGACCAAAGCAGGCAAGAA
GCGGCCTCGCCCTACCACCACAGCGACAGAGAAGGATGGCGCTTTTGTTG
TCTCGAAGACACCTGCTGCGCCAGCGCTAAGCCCGGATCCGTGCACGGAT
GCCACCGACGCGGCTGTCTCTCCATCTGCCGAGGTAGAGGAGGTTGCTTT
AGGCGCTAGTGTGGCTTTCCTGTCCTCAAGCAGCTGGACACAGCTAGGTC
TAGCTGCGTGGATCCAGCGGGCTTGTACGACCATGGGTTTTAAGCGTCCG
ACGCCGGTACAAGAAAAGTGCATCCCCTCCGTGTTGCAAGGGCGAGACGT
GATGGGGTGCGCCGAGACGGGGTCGGGCAAGACGGCAGCATTTGCCTTGC
CCATGCTTCATCGTCTGTCCGAGGACCCCTATGGAATCTTTGGCTTGGTC
CTGACACCTACAAGGGAGCTGGCTATTCAGATTTCTGAGCAATTCCAGGC
TTTGGGGGCGCCGTTGAATTTGAGGCATACAGTGGTGATCGGCGGGGTTA
GCATGGTGCATCAATCGGTTGAGTTGGCGCGGCGCCCACACATAGTGGTG
GCGACACCTGGGAGGCTTTGGGATCATTTGCGAGGCGCAGTCCCGCCTGA
TTTGAGCAAGTGCCGGTTTTTGGTGCTGGATGAAGCGGATCGGTTGTTTT
GTGATGGATTTGAGAAGCATTTAGCGGCTATCCTGGGAGCAATGACGCAC
CCCCGGAGACAAACATTGTTATTCAGTGCCACAATGACTCATTCGTTGGA
AAATTTGAAGAGCTTGACGCGCGTACAACCCGTTTTATTCGATCTGACAA
AAGAGCGGACGTTGCCTTCATCGTTACAGCAACAGTATCTCTTCATGCCC
GCGCAAGTCAAGATGTGCTACCTCGTTTGTCTCCTCCGAAAGGTTCTCCT
CCCCAACAAGAGTGCCACCAGCAGCAGCACCTCCAGTGATGTGAAATCGG
TCATTATCTTCGTCGGGACCTGTCAACGCTGCCAGGAAGTTACCGAGGTA
ATGATAGAGTCAGGCCTAGCCGCCGTGTCTCTCCACTCTGTCTTATCACA
AAAAAGACGCTTGGCGTCTTTAGGGAAGTTTAAGAGTAGTCTTGTCAAGG
TTTTGGTGAGTACGGACGTGGCAAGCAGGGGCTTGGATATCCCTGAGGTT
GATTTGGTGGTCAATTTTGACTTGCCGCGGGTGCCGTCTGATTACGTGCA
TCGGGTAGGTAGGACGGCGAGGGCGGGAAGAAGGGGGAGGGCAGTAGCGA
TGGTGACTCAGTATGATGTTGCCCTTTTGCAAAGGATTGAGGTGTTGGTG
GGGAGGAAGATGGAGAAGTGCGAGGATGTAAGGGAGGAGGAGGTGGTGAA
GCTGTTAAATCCTGTAGCGAAGGCGACGAGGGCCGCAAAGATGCGATTGA
TGGAGGTGGGCTTTGACTTCGAGGTGGAAGAGCATTTAAGGAGGAAAAAG
CGGGATAGGAAAGAGAGGTATCAGAGGAAGAGGAACAGGGTGGCGAGGGA
AGGGGGGGGAGAGAGTTGA
back to top

Coding sequence (CDS) from alignment at chr2:539493..541061+

>NO02G01870.1 ID=NO02G01870.1|Name=NO02G01870.1|organism=Nannochloropsis oceanica|type=CDS|length=1569bp|location=Sequence derived from alignment at chr2:539493..541061+ (Nannochloropsis oceanica)
ATGGTCTCTCTTTTCGCGTCGTCATCGTCCACGACCAAAGCAGGCAAGAA
GCGGCCTCGCCCTACCACCACAGCGACAGAGAAGGATGGCGCTTTTGTTG
TCTCGAAGACACCTGCTGCGCCAGCGCTAAGCCCGGATCCGTGCACGGAT
GCCACCGACGCGGCTGTCTCTCCATCTGCCGAGGTAGAGGAGGTTGCTTT
AGGCGCTAGTGTGGCTTTCCTGTCCTCAAGCAGCTGGACACAGCTAGGTC
TAGCTGCGTGGATCCAGCGGGCTTGTACGACCATGGGTTTTAAGCGTCCG
ACGCCGGTACAAGAAAAGTGCATCCCCTCCGTGTTGCAAGGGCGAGACGT
GATGGGGTGCGCCGAGACGGGGTCGGGCAAGACGGCAGCATTTGCCTTGC
CCATGCTTCATCGTCTGTCCGAGGACCCCTATGGAATCTTTGGCTTGGTC
CTGACACCTACAAGGGAGCTGGCTATTCAGATTTCTGAGCAATTCCAGGC
TTTGGGGGCGCCGTTGAATTTGAGGCATACAGTGGTGATCGGCGGGGTTA
GCATGGTGCATCAATCGGTTGAGTTGGCGCGGCGCCCACACATAGTGGTG
GCGACACCTGGGAGGCTTTGGGATCATTTGCGAGGCGCAGTCCCGCCTGA
TTTGAGCAAGTGCCGGTTTTTGGTGCTGGATGAAGCGGATCGGTTGTTTT
GTGATGGATTTGAGAAGCATTTAGCGGCTATCCTGGGAGCAATGACGCAC
CCCCGGAGACAAACATTGTTATTCAGTGCCACAATGACTCATTCGTTGGA
AAATTTGAAGAGCTTGACGCGCGTACAACCCGTTTTATTCGATCTGACAA
AAGAGCGGACGTTGCCTTCATCGTTACAGCAACAGTATCTCTTCATGCCC
GCGCAAGTCAAGATGTGCTACCTCGTTTGTCTCCTCCGAAAGGTTCTCCT
CCCCAACAAGAGTGCCACCAGCAGCAGCACCTCCAGTGATGTGAAATCGG
TCATTATCTTCGTCGGGACCTGTCAACGCTGCCAGGAAGTTACCGAGGTA
ATGATAGAGTCAGGCCTAGCCGCCGTGTCTCTCCACTCTGTCTTATCACA
AAAAAGACGCTTGGCGTCTTTAGGGAAGTTTAAGAGTAGTCTTGTCAAGG
TTTTGGTGAGTACGGACGTGGCAAGCAGGGGCTTGGATATCCCTGAGGTT
GATTTGGTGGTCAATTTTGACTTGCCGCGGGTGCCGTCTGATTACGTGCA
TCGGGTAGGTAGGACGGCGAGGGCGGGAAGAAGGGGGAGGGCAGTAGCGA
TGGTGACTCAGTATGATGTTGCCCTTTTGCAAAGGATTGAGGTGTTGGTG
GGGAGGAAGATGGAGAAGTGCGAGGATGTAAGGGAGGAGGAGGTGGTGAA
GCTGTTAAATCCTGTAGCGAAGGCGACGAGGGCCGCAAAGATGCGATTGA
TGGAGGTGGGCTTTGACTTCGAGGTGGAAGAGCATTTAAGGAGGAAAAAG
CGGGATAGGAAAGAGAGGTATCAGAGGAAGAGGAACAGGGTGGCGAGGGA
AGGGGGGGGAGAGAGTTGA
back to top
Synonyms
Publications