NO02G01840, NO02G01840 (gene) Nannochloropsis oceanica

Overview
NameNO02G01840
Unique NameNO02G01840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4195
Alignment locationchr2:532387..536581 +

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Properties
Property NameValue
DescriptionPoc1 centriolar protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:532387..536581 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
IPR020472G-protein_beta_WD-40_rep
Homology
[Close]
BLAST of NO02G01840 vs. NCBI_GenBank
Match: EWM30491.1 (poc1 centriolar protein [Nannochloropsis gaditana])

HSP 1 Score: 124.8 bits (312), Expect = 9.100e-25
Identity = 311/416 (74.76%), Postives = 331/416 (79.57%), Query Frame = 0 
Query:    1 MVVTSFSSLSADELVTPALDKTFRGHRSGVTSLAFSPTLKQLASGGEDGTVLVWHFKPGQRAFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQQYAPAHIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFTVHGHQGPVAQAAFSQDTDSSYFASAGFQDKTVMIWQSNLTSYNRPRTKTIITAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRLPYTPHRYTSSSCGVAGARGKGGVRLPTPAYQQPS----QDDFEEVEDEEG 413
            MV+TS S L ADELVTP L++TFRGHR+GV SLAFSPT+KQLASG EDGTV VWHFKP QRAF+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VQQYAPAH +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LFTVHGH+G +AQAAFS D DSS FASAG QD+TVM+W+SNL  YNR R  T +TA                                    R PY P RY  +            + +P PAYQ+PS    +D + E E+ EG
Sbjct:    1 MVITSSSLLGADELVTPELERTFRGHRAGVLSLAFSPTIKQLASGVEDGTVHVWHFKPEQRAFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVQQYAPAHAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLFTVHGHRGRIAQAAFSPDADSSLFASAGMQDRTVMVWRSNLAPYNRVR--TTVTAKEADADWPFSSSTSPAPH-----------------ARPPYIPQRYAYAH--------TYEMDVPVPAYQRPSPVAGRDQYWETEEREG 389
[Close]
BLAST of NO02G01840 vs. NCBI_GenBank
Match: XP_005778873.1 (hypothetical protein EMIHUDRAFT_450278 [Emiliania huxleyi CCMP1516] >EOD26444.1 hypothetical protein EMIHUDRAFT_450278 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 75.1 bits (183), Expect = 8.200e-10
Identity = 32/56 (57.14%), Postives = 46/56 (82.14%), Query Frame = 0 
Query:    9 LSADELVTPALDKTFRGHRSGVTSLAFSPTLKQLASGGEDGTVLVWHFKPGQRAFK 65
            + + E + PAL+++FRGH+ GV+S++FSPT+KQL SGG DGTV+VW+FK   RAF+
Sbjct:    1 MPSPEPMDPALERSFRGHKDGVSSVSFSPTMKQLVSGGLDGTVMVWNFKMQMRAFR 56
[Close]
BLAST of NO02G01840 vs. NCBI_GenBank
Match: XP_005766379.1 (hypothetical protein EMIHUDRAFT_256702, partial [Emiliania huxleyi CCMP1516] >EOD13950.1 hypothetical protein EMIHUDRAFT_256702, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 73.9 bits (180), Expect = 1.800e-9
Identity = 31/48 (64.58%), Postives = 42/48 (87.50%), Query Frame = 0 
Query:   17 PALDKTFRGHRSGVTSLAFSPTLKQLASGGEDGTVLVWHFKPGQRAFK 65
            PAL+++FRGH+ GV+S++FSPT+KQL SGG DGTV+VW+FK   RAF+
Sbjct:    3 PALERSFRGHKDGVSSVSFSPTMKQLVSGGLDGTVMVWNFKMQMRAFR 50
[Close]
BLAST of NO02G01840 vs. NCBI_GenBank
Match: ORY33863.1 (WD40 repeat-like protein [Rhizoclosmatium globosum])

HSP 1 Score: 68.9 bits (167), Expect = 5.900e-8
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 0 
Query:    2 VVTSFSSLSADELVTPALDKTFRGHRSGVTSLAFSPTLKQLASGGEDGTVLVWHFKPGQRAFK 65
            ++TS    S  ++  P LD++FRGH+  +T LAF P++ Q+ASG  D +V+VWHFKP  RAF+
Sbjct:   16 LLTSPPQQSYIQMQDPTLDRSFRGHKDVITDLAFKPSMTQIASGSMDNSVMVWHFKPQMRAFR 78
[Close]
BLAST of NO02G01840 vs. NCBI_GenBank
Match: XP_009832145.1 (hypothetical protein H257_08069 [Aphanomyces astaci] >ETV78564.1 hypothetical protein H257_08069 [Aphanomyces astaci])

HSP 1 Score: 68.2 bits (165), Expect = 1.000e-7
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 0 
Query:   17 PALDKTFRGHRSGVTSLAFSPTLKQLASGGEDGTVLVWHFKPGQRAFK 65
            P+L +TFRGH+SGV  L++SP ++QLASG  D TV++W+FKP  RAF+
Sbjct:    3 PSLQRTFRGHKSGVECLSYSPNMRQLASGSLDCTVMIWNFKPQMRAFR 50
[Close]
BLAST of NO02G01840 vs. NCBI_GenBank
Match: ORY50249.1 (WD40 repeat-like protein [Rhizoclosmatium globosum])

HSP 1 Score: 68.2 bits (165), Expect = 1.000e-7
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 0 
Query:   17 PALDKTFRGHRSGVTSLAFSPTLKQLASGGEDGTVLVWHFKPGQRAFK 65
            P LD++FRGH+  +T LAF P++ Q+ASG  D +V+VWHFKP  RAF+
Sbjct:    4 PTLDRSFRGHKDVITDLAFKPSMTQIASGSMDNSVMVWHFKPQMRAFR 51
[Close]
BLAST of NO02G01840 vs. NCBI_GenBank
Match: XP_008866745.1 (hypothetical protein H310_04260 [Aphanomyces invadans] >ETW05307.1 hypothetical protein H310_04260 [Aphanomyces invadans])

HSP 1 Score: 67.0 bits (162), Expect = 2.200e-7
Identity = 27/48 (56.25%), Postives = 39/48 (81.25%), Query Frame = 0 
Query:   17 PALDKTFRGHRSGVTSLAFSPTLKQLASGGEDGTVLVWHFKPGQRAFK 65
            P+L +TFRGH+SGV  L+++P ++QLASG  D TV++W+FKP  RAF+
Sbjct:    3 PSLQRTFRGHKSGVECLSYNPNMRQLASGSLDCTVMIWNFKPQMRAFR 50
[Close]
BLAST of NO02G01840 vs. NCBI_GenBank
Match: XP_013900683.1 (WD repeat domain 51A [Monoraphidium neglectum] >KIZ01664.1 WD repeat domain 51A [Monoraphidium neglectum])

HSP 1 Score: 66.6 bits (161), Expect = 2.900e-7
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 0 
Query:   17 PALDKTFRGHRSGVTSLAFSPTLKQLASGGEDGTVLVWHFKPGQRAF 64
            P L+++FRGH+  VTS+AF+  LKQL SG  DGTV+VW+FKP  RAF
Sbjct:   20 PTLERSFRGHKDAVTSVAFNSNLKQLISGSLDGTVMVWNFKPQLRAF 66
[Close]
BLAST of NO02G01840 vs. NCBI_GenBank
Match: XP_008621062.1 (hypothetical protein SDRG_16622 [Saprolegnia diclina VS20] >EQC25498.1 hypothetical protein SDRG_16622 [Saprolegnia diclina VS20])

HSP 1 Score: 65.9 bits (159), Expect = 5.000e-7
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 0 
Query:   17 PALDKTFRGHRSGVTSLAFSPTLKQLASGGEDGTVLVWHFKPGQRAFK 65
            P+L +TFRGH+SGV +LA+ P  +QLASG  D +V+VW+FKP  RAF+
Sbjct:    3 PSLQRTFRGHKSGVAALAYGPQARQLASGAMDCSVMVWNFKPQVRAFR 50
[Close]
BLAST of NO02G01840 vs. NCBI_GenBank
Match: XP_012204022.1 (hypothetical protein SPRG_20731 [Saprolegnia parasitica CBS 223.65] >KDO25331.1 hypothetical protein SPRG_20731 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 65.9 bits (159), Expect = 5.000e-7
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 0 
Query:   17 PALDKTFRGHRSGVTSLAFSPTLKQLASGGEDGTVLVWHFKPGQRAFK 65
            P+L +TFRGH+SGV +LA+ P  +QLASG  D +V+VW+FKP  RAF+
Sbjct:    3 PSLQRTFRGHKSGVAALAYGPQARQLASGAMDCSVMVWNFKPQVRAFR 50
The following BLAST results are available for this feature:
BLAST of NO02G01840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
EWM30491.19.100e-2574.76poc1 centriolar protein [Nannochloropsis gaditana][more]
XP_005778873.18.200e-1057.14hypothetical protein EMIHUDRAFT_450278 [Emiliania ... [more]
XP_005766379.11.800e-964.58hypothetical protein EMIHUDRAFT_256702, partial [E... [more]
ORY33863.15.900e-847.62WD40 repeat-like protein [Rhizoclosmatium globosum... [more]
XP_009832145.11.000e-758.33hypothetical protein H257_08069 [Aphanomyces astac... [more]
ORY50249.11.000e-756.25WD40 repeat-like protein [Rhizoclosmatium globosum... [more]
XP_008866745.12.200e-756.25hypothetical protein H310_04260 [Aphanomyces invad... [more]
XP_013900683.12.900e-761.70WD repeat domain 51A [Monoraphidium neglectum] >KI... [more]
XP_008621062.15.000e-758.33hypothetical protein SDRG_16622 [Saprolegnia dicli... [more]
XP_012204022.15.000e-758.33hypothetical protein SPRG_20731 [Saprolegnia paras... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006812NSK006812Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01840.1NO02G01840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667768gene_768Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g31gene177Nannochloropsis gaditana (N. gaditana B-31)gene
Naga_100013g18gene190Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01840.1NO02G01840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01840 ID=NO02G01840|Name=NO02G01840|organism=Nannochloropsis oceanica|type=gene|length=4195bp
GGAAAAACACAAAGgtgaaaaccgtgaatattttggaacgcaaagttctt
ttgttaagagagatgtactaaacctcgcgctggagcaagggaaacaatca
tggatccccctgaccctctatggacccacagtcaagctcgagaggacaat
ctcagagcaggaagataaccaattcgtaacctgcttgttcgcatcagttc
gcgggggtgctgcagtgcagtccaaactcgacttgcgagcgtcgtcaaaa
ggaaaaaaatctgcttgcgcttcaatgccccactctcccacccaccccaa
ccctactagagtcctcaaatgcgatacgcaatacgcaattaatttcgaca
agatcaaccatttcagttcaaaaggtatttttatttttttctcattttat
ttatgctttctgagtttttcttcattcagtccagtatcctgcaatcctag
tccttttttagccgtgaaggagaggaggttaaatcgttcaactctggctt
gggtcccccccctgctgctgctgttcctcccgcttttctccctgaacctg
tgcatggtctttcacagcgtggaaagaagacttctttcaagttgtcgaca
aaggagatgtgataggaattttgggggtcggcgatctgacgtaaaggcag
ggctcctcctgacgttcaagggaagggagggacaaaagagaagtgagcat
catacacgacatccatgaagcggttcgagaccttgcaaatcttgcatcta
gaaaatccgttcgataagatcgagccaattttctcgtgcagtccatccct
ccccttgtccactctttcccttcttgaatccttacccgacgcctcatgcg
ccctcctcgcatggtccctcgccaacttcgcatgtgccctcaccgcagac
cacttaaacgactcgttcgtcgtgatatttctcaaggccaaacgcaagtg
atacaacaaaaaccccgccagtaccacagccatgacaaagcacaatgcaa
gcactccacacactgctccttcatgcaccacaagatattgcaacaccacc
actggggtcgcccccaccgtcgccccagagctcggactatagaattttgc
ctcccacaattgtttctctgccatttctttcctcaacacctcccataaac
acgaacttccccaaaagaaagtcatgctgtgcaacgccaaaaagaagaga
aaatgtctatagttcagctcacccacgcactggtttaaccacccacagtg
gtgatcaaacctcgactgacacaccccacacagacgacaatgcttgctcc
tcgccaatttgggtaccttacatgtcacacactcttttccggaagcatag
ataatctcgtccgccttgtaattgtcaaaggttggccagctcgacggggt
gatggtacccgccgggatcgagcacgctacgacaaacgaagacaaacagg
caacgaccaacgcggtagaaaaggccaagtctataggctccatgcgtccc
aagccttcatagatgaaggtggcgaaggagccgaggtaaagaaagaggta
gaggagctggaggaggggattgcgttgattcaccacatagtcgtaggagc
gggcgagtgagtcgaagagcgaggagggcaggcaacggcggagctttttg
gtgagtaatccgggaagatcttcggtaaggaggatgttgagcttgccgcc
tagtgttggaatggagttattgacgtaggtggggaaagagggaggaggag
ggtgggtctcttaaatgtgaatggatgagtggcgacatcaaaattggagc
tagacgtacaggcataactatgcagtacataagtagataaagctgcttag
cagtaagagaagaggaagcaagagagttgacgattctcactctagtaccc
tgtgtcctacatcacttcattcaagcccggaagggggacatcacttcatt
caagcccagaggcggcgtgccctcttagagagacacaaacgtacctaatg
agtcactgttggggtccgctaccacgcaaacccagaccaagaatgtaacg
aggacgatgtagacaattaaaatggtcatgatctccatggctcaggcctg
ggacgattcagcctcccggctccaggcgatggtgcgaggtgaaaatgatg
ctctccgccgcttttcagggcgccccgccctccctctttcgaggtccagc
tacctcaagcgccgctataaggtgctatgcgcgtatgttgaacggacaaa
ggatgcgcattaggatgctatgtggtggtaataatggagaaagaaatcgc
caacttttcgacaacgtgccccagggcgttcctcatctctttagcaaaac
tctccaaaactcatgcacatttcaccccatcccctgaaagGTGCCCCCAC
CACCATGGTGGTGACGTCCTTTTCCTCGCTGAGTGCCGATGAGCTCGTGA
CTCCGGCCTTGGACAAGACCTTTCGCGGCCACCGGAGTGGTGTGACCAGC
CTCGCGTTCAGTCCCACTCTCAAACAGCTTGCCTCGGGTGGGGAGGATGG
CACTGTCCTCGTCTGGCACTTCAAGCCTGGGCAAAGGGCCTTTAAATACG
TTGGACACAAAGGTCCAGTGCATTGCGTGCAGTTTTCGTCGTCGGGCCGC
TTCTTGTCGTCTGGAGCAGGGGATGCCACGGTGAAGTTGTGGGAGCCCTC
AGCGCGGGGACGTTCCTTGACCCTCAAGGGGCATTCGCGGGCTGTGCGGG
CCGTGACCTTTTCGGGCGATGACCGATTGCTGTTAACTGCATCGGATGAC
AAGACAGTCAAGCTTTGGTCCGTAAATGATCGCCGTTTTCGAGGGAGCTT
GCAGGGACATAGTCATTGGGTGCGCACCGTGGCTTTGAGCCCTGATGGGC
TAGCAGCTGCATCGGGGTCTGATGATTGCTCCGTCCGCCTATGGGACGTC
GAAAATCGCGAATGCACGTGTATCTTGACAGAGCCTCAAGGTGCCGTGAC
TTCAGTGGCGTATCACCCTCGGGGCGCTTGTCTGGCCTCAGGGGGAATGG
ATAAATGCCTCCGCATTTGGGACACGCGTTCCCAGGAATTGGTGCAGCAA
TACGCACCTGCCCACATCAAATCTATCACCTCTCTTACCTTTCACCAATC
GGGCAATTTTGTGCTGACATCTTCCGACGACAGTACTCTCAAAATTTGGG
ATGTAAGGGAGGGGAGGTTGTTGTTCACAGTGCATGGCCACCAGGGCCCT
GTTGCTCAAGCCGCGTTCAGTCAAGATACAGATAGCTCTTACTTTGCATC
TGCCGGATTTCAAGATAAGACTGTCATGATCTGGCAATCCAACTTGACAT
CCTACAACCGGCCTCGCACTAAAACCATCATCACTGCGCCAGCTGCTGCT
TCTGCTCCTGCTCCTACAGCTGCTACAATAACTATTCCTGCTGCCACTTT
TTCTCGGCCCTCATCCGCATCATCCACCTCTTCCTCGACGCCCCGACGCT
TGCCTTACACTCCTCATCGCTACACTTCATCGTCTTGCGGCGTTGCCGGT
GCTCGTGGAAAAGGAGGAGTGAGACTACCCACCCCTGCGTACCAGCAACC
GTCGCAAGATGACTTTGAGGAGGTCGAGGACGAAGAAGGGGAAGAAGGAC
GGATGTGGGAAGGAGTAGGGCAAGATTGGACATCTAAGAGGCGCCCACAA
TGGCAGGAGGAGGAGGAGAAAGTGGGGGAGGAGCAGGGGAATATGGTAGT
GGATTACCACCTGATGCCGCCGTCGGCGCCACCGTTGCAGTACGAGGAAG
AAGACGAGCACGAGAGGGGGGAGGGGAGAGAAGCGGGGGGAGAAAGATTG
GTGTTCCCGACAGCTAATCCTACTGATAGAAGGTTCTCGCCGCCTTCTTC
GTCATCGTCGTCTTCAGATGGGGCAGCAACGGCGAGAAAGAAAGGAAGAG
AAGGGGGAGAGGGAGGAGGAGGAGGAGCAGCAGATGCGAACGCGGTTTTG
TTGTATCAAACCTTGTCGTTATTAGCCGAGAGGATGAAGACACTTGAGGA
CCGGCTGGAGCATTTAGGTATCATGGATGGGGGACGGGTAGGGATGGCGA
CGATCCCTATCAGCCACCACCACCACCACCAGCAGCAACAGCAGCAGCAA
CAGCAGCAGCAACAGCAGTGGGGTCGAGAACAAGAGGGTCACTAG
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protein sequence of NO02G01840.1

>NO02G01840.1-protein ID=NO02G01840.1-protein|Name=NO02G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=597bp
MVVTSFSSLSADELVTPALDKTFRGHRSGVTSLAFSPTLKQLASGGEDGT
VLVWHFKPGQRAFKYVGHKGPVHCVQFSSSGRFLSSGAGDATVKLWEPSA
RGRSLTLKGHSRAVRAVTFSGDDRLLLTASDDKTVKLWSVNDRRFRGSLQ
GHSHWVRTVALSPDGLAAASGSDDCSVRLWDVENRECTCILTEPQGAVTS
VAYHPRGACLASGGMDKCLRIWDTRSQELVQQYAPAHIKSITSLTFHQSG
NFVLTSSDDSTLKIWDVREGRLLFTVHGHQGPVAQAAFSQDTDSSYFASA
GFQDKTVMIWQSNLTSYNRPRTKTIITAPAAASAPAPTAATITIPAATFS
RPSSASSTSSSTPRRLPYTPHRYTSSSCGVAGARGKGGVRLPTPAYQQPS
QDDFEEVEDEEGEEGRMWEGVGQDWTSKRRPQWQEEEEKVGEEQGNMVVD
YHLMPPSAPPLQYEEEDEHERGEGREAGGERLVFPTANPTDRRFSPPSSS
SSSSDGAATARKKGREGGEGGGGGAADANAVLLYQTLSLLAERMKTLEDR
LEHLGIMDGGRVGMATIPISHHHHHQQQQQQQQQQQQQWGREQEGH*
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Synonyms
Publications