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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:532387..536581 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01840.1 vs.
Match: EWM30491.1 (poc1 centriolar protein [Nannochloropsis gaditana]) HSP 1 Score: 550.4 bits (1417), Expect = 6.700e-153 Identity = 318/576 (55.21%), Postives = 378/576 (65.62%), Query Frame = 0
Query: 1 MVVTSFSSLSADELVTPALDKTFRGHRSGVTSLAFSPTLKQLASGGEDGTVLVWHFKPGQRAFKYVGHKGPVHCVQFSSSGRFLSSGAGDATVKLWEPSARGRSLTLKGHSRAVRAVTFSGDDRLLLTASDDKTVKLWSVNDRRFRGSLQGHSHWVRTVALSPDGLAAASGSDDCSVRLWDVENRECTCILTEPQGAVTSVAYHPRGACLASGGMDKCLRIWDTRSQELVQQYAPAHIKSITSLTFHQSGNFVLTSSDDSTLKIWDVREGRLLFTVHGHQGPVAQAAFSQDTDSSYFASAGFQDKTVMIWQSNLTSYNRPRTKTIITAPAAASAPAPTAATITIPAATFSRPSSASSTSSSTPRRLPYTPHRYTSSSCGVAGARGKGGVRLPTPAYQQPS----QDDFEEVEDEEGEEGRMWEGVGQDWTSKRRPQWQEEEEKVGEEQGNMVVDYHLMPPSAPPLQYEEEDEHERGEGREAGGERLVFPTANPTDRRFSPPSSSSSSSDGAATAR-------------KKGREGGEGGGGGAADANAVLLYQTLSLLAERMKTLEDRLEHLGIMDG 560
MV+TS S L ADELVTP L++TFRGHR+GV SLAFSPT+KQLASG EDGTV VWHFKP QRAF+Y GHKGPVH VQ+S SGR+L+SG GDA VKLWEPSARGR+L LK HSRAVR+V FS D RLLLT SDDKTVK+ S++DRRFRGSLQGHSHWVR+ SPD L AASGS+D +VRLWDV+NREC IL E + AV +VA+HP GACLA+GG D+CLRIWDTR+Q+LVQQYAPAH + I S+ FH SGNFVLTSS D TLK+WDVRE RLLFTVHGH+G +AQAAFS D DSS FASAG QD+TVM+W+SNL YNR RT T+T A P S SSTS + R PY P RY + + +P PAYQ+PS +D + E E+ EG + + ++ PQ E+ E Q + VVDYH+ PSAPPL E E++ R E R R PTA P P SSS G A+ K G G G D + L +TLSLLA+RM+T+E++LE L + G
Sbjct: 1 MVITSSSLLGADELVTPELERTFRGHRAGVLSLAFSPTIKQLASGVEDGTVHVWHFKPEQRAFRYPGHKGPVHSVQYSPSGRYLASGGGDAIVKLWEPSARGRALVLKNHSRAVRSVAFSADSRLLLTGSDDKTVKIISLHDRRFRGSLQGHSHWVRSATFSPDALMAASGSEDRTVRLWDVQNRECLGILMEAKDAVCAVAFHPDGACLAAGGRDRCLRIWDTRTQDLVQQYAPAHAEGINSVAFHSSGNFVLTSSQDGTLKVWDVREARLLFTVHGHRGRIAQAAFSPDADSSLFASAGMQDRTVMVWRSNLAPYNRVRT------------------TVTAKEADADWPFS-SSTSPAPHARPPYIPQRYAYAH--------TYEMDVPVPAYQRPSPVAGRDQYWETEEREGGQLSAFS------RNRGEPQRGEQAETSKAWQQDYVVDYHVEKPSAPPLLAELEEQETREEER----ARTAVPTAAPASS--FPGMHQDSSSQGRVKAQAVSGAGWQRKAREKLGVSGHCEAEEGERDFSPTHLTRTLSLLADRMRTIEEKLEKLSLGPG 537
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01840.1 ID=NO02G01840.1|Name=NO02G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1819bp
GGAAAAACACAAAGGTGCCCCCACCACCATGGTGGTGACGTCCTTTTCCT
CGCTGAGTGCCGATGAGCTCGTGACTCCGGCCTTGGACAAGACCTTTCGC
GGCCACCGGAGTGGTGTGACCAGCCTCGCGTTCAGTCCCACTCTCAAACA
GCTTGCCTCGGGTGGGGAGGATGGCACTGTCCTCGTCTGGCACTTCAAGC
CTGGGCAAAGGGCCTTTAAATACGTTGGACACAAAGGTCCAGTGCATTGC
GTGCAGTTTTCGTCGTCGGGCCGCTTCTTGTCGTCTGGAGCAGGGGATGC
CACGGTGAAGTTGTGGGAGCCCTCAGCGCGGGGACGTTCCTTGACCCTCA
AGGGGCATTCGCGGGCTGTGCGGGCCGTGACCTTTTCGGGCGATGACCGA
TTGCTGTTAACTGCATCGGATGACAAGACAGTCAAGCTTTGGTCCGTAAA
TGATCGCCGTTTTCGAGGGAGCTTGCAGGGACATAGTCATTGGGTGCGCA
CCGTGGCTTTGAGCCCTGATGGGCTAGCAGCTGCATCGGGGTCTGATGAT
TGCTCCGTCCGCCTATGGGACGTCGAAAATCGCGAATGCACGTGTATCTT
GACAGAGCCTCAAGGTGCCGTGACTTCAGTGGCGTATCACCCTCGGGGCG
CTTGTCTGGCCTCAGGGGGAATGGATAAATGCCTCCGCATTTGGGACACG
CGTTCCCAGGAATTGGTGCAGCAATACGCACCTGCCCACATCAAATCTAT
CACCTCTCTTACCTTTCACCAATCGGGCAATTTTGTGCTGACATCTTCCG
ACGACAGTACTCTCAAAATTTGGGATGTAAGGGAGGGGAGGTTGTTGTTC
ACAGTGCATGGCCACCAGGGCCCTGTTGCTCAAGCCGCGTTCAGTCAAGA
TACAGATAGCTCTTACTTTGCATCTGCCGGATTTCAAGATAAGACTGTCA
TGATCTGGCAATCCAACTTGACATCCTACAACCGGCCTCGCACTAAAACC
ATCATCACTGCGCCAGCTGCTGCTTCTGCTCCTGCTCCTACAGCTGCTAC
AATAACTATTCCTGCTGCCACTTTTTCTCGGCCCTCATCCGCATCATCCA
CCTCTTCCTCGACGCCCCGACGCTTGCCTTACACTCCTCATCGCTACACT
TCATCGTCTTGCGGCGTTGCCGGTGCTCGTGGAAAAGGAGGAGTGAGACT
ACCCACCCCTGCGTACCAGCAACCGTCGCAAGATGACTTTGAGGAGGTCG
AGGACGAAGAAGGGGAAGAAGGACGGATGTGGGAAGGAGTAGGGCAAGAT
TGGACATCTAAGAGGCGCCCACAATGGCAGGAGGAGGAGGAGAAAGTGGG
GGAGGAGCAGGGGAATATGGTAGTGGATTACCACCTGATGCCGCCGTCGG
CGCCACCGTTGCAGTACGAGGAAGAAGACGAGCACGAGAGGGGGGAGGGG
AGAGAAGCGGGGGGAGAAAGATTGGTGTTCCCGACAGCTAATCCTACTGA
TAGAAGGTTCTCGCCGCCTTCTTCGTCATCGTCGTCTTCAGATGGGGCAG
CAACGGCGAGAAAGAAAGGAAGAGAAGGGGGAGAGGGAGGAGGAGGAGGA
GCAGCAGATGCGAACGCGGTTTTGTTGTATCAAACCTTGTCGTTATTAGC
CGAGAGGATGAAGACACTTGAGGACCGGCTGGAGCATTTAGGTATCATGG
ATGGGGGACGGGTAGGGATGGCGACGATCCCTATCAGCCACCACCACCAC
CACCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAACAGCAGTGGGGTCG
AGAACAAGAGGGTCACTAG back to topprotein sequence of NO02G01840.1 >NO02G01840.1-protein ID=NO02G01840.1-protein|Name=NO02G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=597bp
MVVTSFSSLSADELVTPALDKTFRGHRSGVTSLAFSPTLKQLASGGEDGT
VLVWHFKPGQRAFKYVGHKGPVHCVQFSSSGRFLSSGAGDATVKLWEPSA
RGRSLTLKGHSRAVRAVTFSGDDRLLLTASDDKTVKLWSVNDRRFRGSLQ
GHSHWVRTVALSPDGLAAASGSDDCSVRLWDVENRECTCILTEPQGAVTS
VAYHPRGACLASGGMDKCLRIWDTRSQELVQQYAPAHIKSITSLTFHQSG
NFVLTSSDDSTLKIWDVREGRLLFTVHGHQGPVAQAAFSQDTDSSYFASA
GFQDKTVMIWQSNLTSYNRPRTKTIITAPAAASAPAPTAATITIPAATFS
RPSSASSTSSSTPRRLPYTPHRYTSSSCGVAGARGKGGVRLPTPAYQQPS
QDDFEEVEDEEGEEGRMWEGVGQDWTSKRRPQWQEEEEKVGEEQGNMVVD
YHLMPPSAPPLQYEEEDEHERGEGREAGGERLVFPTANPTDRRFSPPSSS
SSSSDGAATARKKGREGGEGGGGGAADANAVLLYQTLSLLAERMKTLEDR
LEHLGIMDGGRVGMATIPISHHHHHQQQQQQQQQQQQQWGREQEGH* back to topmRNA from alignment at chr2:532387..536581+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01840.1 ID=NO02G01840.1|Name=NO02G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=4195bp|location=Sequence derived from alignment at chr2:532387..536581+ (Nannochloropsis oceanica)
GGAAAAACACAAAGGTGAAAACCGTGAATATTTTGGAACGCAAAGTTCTT
TTGTTAAGAGAGATGTACTAAACCTCGCGCTGGAGCAAGGGAAACAATCA
TGGATCCCCCTGACCCTCTATGGACCCACAGTCAAGCTCGAGAGGACAAT
CTCAGAGCAGGAAGATAACCAATTCGTAACCTGCTTGTTCGCATCAGTTC
GCGGGGGTGCTGCAGTGCAGTCCAAACTCGACTTGCGAGCGTCGTCAAAA
GGAAAAAAATCTGCTTGCGCTTCAATGCCCCACTCTCCCACCCACCCCAA
CCCTACTAGAGTCCTCAAATGCGATACGCAATACGCAATTAATTTCGACA
AGATCAACCATTTCAGTTCAAAAGGTATTTTTATTTTTTTCTCATTTTAT
TTATGCTTTCTGAGTTTTTCTTCATTCAGTCCAGTATCCTGCAATCCTAG
TCCTTTTTTAGCCGTGAAGGAGAGGAGGTTAAATCGTTCAACTCTGGCTT
GGGTCCCCCCCCTGCTGCTGCTGTTCCTCCCGCTTTTCTCCCTGAACCTG
TGCATGGTCTTTCACAGCGTGGAAAGAAGACTTCTTTCAAGTTGTCGACA
AAGGAGATGTGATAGGAATTTTGGGGGTCGGCGATCTGACGTAAAGGCAG
GGCTCCTCCTGACGTTCAAGGGAAGGGAGGGACAAAAGAGAAGTGAGCAT
CATACACGACATCCATGAAGCGGTTCGAGACCTTGCAAATCTTGCATCTA
GAAAATCCGTTCGATAAGATCGAGCCAATTTTCTCGTGCAGTCCATCCCT
CCCCTTGTCCACTCTTTCCCTTCTTGAATCCTTACCCGACGCCTCATGCG
CCCTCCTCGCATGGTCCCTCGCCAACTTCGCATGTGCCCTCACCGCAGAC
CACTTAAACGACTCGTTCGTCGTGATATTTCTCAAGGCCAAACGCAAGTG
ATACAACAAAAACCCCGCCAGTACCACAGCCATGACAAAGCACAATGCAA
GCACTCCACACACTGCTCCTTCATGCACCACAAGATATTGCAACACCACC
ACTGGGGTCGCCCCCACCGTCGCCCCAGAGCTCGGACTATAGAATTTTGC
CTCCCACAATTGTTTCTCTGCCATTTCTTTCCTCAACACCTCCCATAAAC
ACGAACTTCCCCAAAAGAAAGTCATGCTGTGCAACGCCAAAAAGAAGAGA
AAATGTCTATAGTTCAGCTCACCCACGCACTGGTTTAACCACCCACAGTG
GTGATCAAACCTCGACTGACACACCCCACACAGACGACAATGCTTGCTCC
TCGCCAATTTGGGTACCTTACATGTCACACACTCTTTTCCGGAAGCATAG
ATAATCTCGTCCGCCTTGTAATTGTCAAAGGTTGGCCAGCTCGACGGGGT
GATGGTACCCGCCGGGATCGAGCACGCTACGACAAACGAAGACAAACAGG
CAACGACCAACGCGGTAGAAAAGGCCAAGTCTATAGGCTCCATGCGTCCC
AAGCCTTCATAGATGAAGGTGGCGAAGGAGCCGAGGTAAAGAAAGAGGTA
GAGGAGCTGGAGGAGGGGATTGCGTTGATTCACCACATAGTCGTAGGAGC
GGGCGAGTGAGTCGAAGAGCGAGGAGGGCAGGCAACGGCGGAGCTTTTTG
GTGAGTAATCCGGGAAGATCTTCGGTAAGGAGGATGTTGAGCTTGCCGCC
TAGTGTTGGAATGGAGTTATTGACGTAGGTGGGGAAAGAGGGAGGAGGAG
GGTGGGTCTCTTAAATGTGAATGGATGAGTGGCGACATCAAAATTGGAGC
TAGACGTACAGGCATAACTATGCAGTACATAAGTAGATAAAGCTGCTTAG
CAGTAAGAGAAGAGGAAGCAAGAGAGTTGACGATTCTCACTCTAGTACCC
TGTGTCCTACATCACTTCATTCAAGCCCGGAAGGGGGACATCACTTCATT
CAAGCCCAGAGGCGGCGTGCCCTCTTAGAGAGACACAAACGTACCTAATG
AGTCACTGTTGGGGTCCGCTACCACGCAAACCCAGACCAAGAATGTAACG
AGGACGATGTAGACAATTAAAATGGTCATGATCTCCATGGCTCAGGCCTG
GGACGATTCAGCCTCCCGGCTCCAGGCGATGGTGCGAGGTGAAAATGATG
CTCTCCGCCGCTTTTCAGGGCGCCCCGCCCTCCCTCTTTCGAGGTCCAGC
TACCTCAAGCGCCGCTATAAGGTGCTATGCGCGTATGTTGAACGGACAAA
GGATGCGCATTAGGATGCTATGTGGTGGTAATAATGGAGAAAGAAATCGC
CAACTTTTCGACAACGTGCCCCAGGGCGTTCCTCATCTCTTTAGCAAAAC
TCTCCAAAACTCATGCACATTTCACCCCATCCCCTGAAAGGTGCCCCCAC
CACCATGGTGGTGACGTCCTTTTCCTCGCTGAGTGCCGATGAGCTCGTGA
CTCCGGCCTTGGACAAGACCTTTCGCGGCCACCGGAGTGGTGTGACCAGC
CTCGCGTTCAGTCCCACTCTCAAACAGCTTGCCTCGGGTGGGGAGGATGG
CACTGTCCTCGTCTGGCACTTCAAGCCTGGGCAAAGGGCCTTTAAATACG
TTGGACACAAAGGTCCAGTGCATTGCGTGCAGTTTTCGTCGTCGGGCCGC
TTCTTGTCGTCTGGAGCAGGGGATGCCACGGTGAAGTTGTGGGAGCCCTC
AGCGCGGGGACGTTCCTTGACCCTCAAGGGGCATTCGCGGGCTGTGCGGG
CCGTGACCTTTTCGGGCGATGACCGATTGCTGTTAACTGCATCGGATGAC
AAGACAGTCAAGCTTTGGTCCGTAAATGATCGCCGTTTTCGAGGGAGCTT
GCAGGGACATAGTCATTGGGTGCGCACCGTGGCTTTGAGCCCTGATGGGC
TAGCAGCTGCATCGGGGTCTGATGATTGCTCCGTCCGCCTATGGGACGTC
GAAAATCGCGAATGCACGTGTATCTTGACAGAGCCTCAAGGTGCCGTGAC
TTCAGTGGCGTATCACCCTCGGGGCGCTTGTCTGGCCTCAGGGGGAATGG
ATAAATGCCTCCGCATTTGGGACACGCGTTCCCAGGAATTGGTGCAGCAA
TACGCACCTGCCCACATCAAATCTATCACCTCTCTTACCTTTCACCAATC
GGGCAATTTTGTGCTGACATCTTCCGACGACAGTACTCTCAAAATTTGGG
ATGTAAGGGAGGGGAGGTTGTTGTTCACAGTGCATGGCCACCAGGGCCCT
GTTGCTCAAGCCGCGTTCAGTCAAGATACAGATAGCTCTTACTTTGCATC
TGCCGGATTTCAAGATAAGACTGTCATGATCTGGCAATCCAACTTGACAT
CCTACAACCGGCCTCGCACTAAAACCATCATCACTGCGCCAGCTGCTGCT
TCTGCTCCTGCTCCTACAGCTGCTACAATAACTATTCCTGCTGCCACTTT
TTCTCGGCCCTCATCCGCATCATCCACCTCTTCCTCGACGCCCCGACGCT
TGCCTTACACTCCTCATCGCTACACTTCATCGTCTTGCGGCGTTGCCGGT
GCTCGTGGAAAAGGAGGAGTGAGACTACCCACCCCTGCGTACCAGCAACC
GTCGCAAGATGACTTTGAGGAGGTCGAGGACGAAGAAGGGGAAGAAGGAC
GGATGTGGGAAGGAGTAGGGCAAGATTGGACATCTAAGAGGCGCCCACAA
TGGCAGGAGGAGGAGGAGAAAGTGGGGGAGGAGCAGGGGAATATGGTAGT
GGATTACCACCTGATGCCGCCGTCGGCGCCACCGTTGCAGTACGAGGAAG
AAGACGAGCACGAGAGGGGGGAGGGGAGAGAAGCGGGGGGAGAAAGATTG
GTGTTCCCGACAGCTAATCCTACTGATAGAAGGTTCTCGCCGCCTTCTTC
GTCATCGTCGTCTTCAGATGGGGCAGCAACGGCGAGAAAGAAAGGAAGAG
AAGGGGGAGAGGGAGGAGGAGGAGGAGCAGCAGATGCGAACGCGGTTTTG
TTGTATCAAACCTTGTCGTTATTAGCCGAGAGGATGAAGACACTTGAGGA
CCGGCTGGAGCATTTAGGTATCATGGATGGGGGACGGGTAGGGATGGCGA
CGATCCCTATCAGCCACCACCACCACCACCAGCAGCAACAGCAGCAGCAA
CAGCAGCAGCAACAGCAGTGGGGTCGAGAACAAGAGGGTCACTAG back to topCoding sequence (CDS) from alignment at chr2:532387..536581+ >NO02G01840.1 ID=NO02G01840.1|Name=NO02G01840.1|organism=Nannochloropsis oceanica|type=CDS|length=1791bp|location=Sequence derived from alignment at chr2:532387..536581+ (Nannochloropsis oceanica)
ATGGTGGTGACGTCCTTTTCCTCGCTGAGTGCCGATGAGCTCGTGACTCC
GGCCTTGGACAAGACCTTTCGCGGCCACCGGAGTGGTGTGACCAGCCTCG
CGTTCAGTCCCACTCTCAAACAGCTTGCCTCGGGTGGGGAGGATGGCACT
GTCCTCGTCTGGCACTTCAAGCCTGGGCAAAGGGCCTTTAAATACGTTGG
ACACAAAGGTCCAGTGCATTGCGTGCAGTTTTCGTCGTCGGGCCGCTTCT
TGTCGTCTGGAGCAGGGGATGCCACGGTGAAGTTGTGGGAGCCCTCAGCG
CGGGGACGTTCCTTGACCCTCAAGGGGCATTCGCGGGCTGTGCGGGCCGT
GACCTTTTCGGGCGATGACCGATTGCTGTTAACTGCATCGGATGACAAGA
CAGTCAAGCTTTGGTCCGTAAATGATCGCCGTTTTCGAGGGAGCTTGCAG
GGACATAGTCATTGGGTGCGCACCGTGGCTTTGAGCCCTGATGGGCTAGC
AGCTGCATCGGGGTCTGATGATTGCTCCGTCCGCCTATGGGACGTCGAAA
ATCGCGAATGCACGTGTATCTTGACAGAGCCTCAAGGTGCCGTGACTTCA
GTGGCGTATCACCCTCGGGGCGCTTGTCTGGCCTCAGGGGGAATGGATAA
ATGCCTCCGCATTTGGGACACGCGTTCCCAGGAATTGGTGCAGCAATACG
CACCTGCCCACATCAAATCTATCACCTCTCTTACCTTTCACCAATCGGGC
AATTTTGTGCTGACATCTTCCGACGACAGTACTCTCAAAATTTGGGATGT
AAGGGAGGGGAGGTTGTTGTTCACAGTGCATGGCCACCAGGGCCCTGTTG
CTCAAGCCGCGTTCAGTCAAGATACAGATAGCTCTTACTTTGCATCTGCC
GGATTTCAAGATAAGACTGTCATGATCTGGCAATCCAACTTGACATCCTA
CAACCGGCCTCGCACTAAAACCATCATCACTGCGCCAGCTGCTGCTTCTG
CTCCTGCTCCTACAGCTGCTACAATAACTATTCCTGCTGCCACTTTTTCT
CGGCCCTCATCCGCATCATCCACCTCTTCCTCGACGCCCCGACGCTTGCC
TTACACTCCTCATCGCTACACTTCATCGTCTTGCGGCGTTGCCGGTGCTC
GTGGAAAAGGAGGAGTGAGACTACCCACCCCTGCGTACCAGCAACCGTCG
CAAGATGACTTTGAGGAGGTCGAGGACGAAGAAGGGGAAGAAGGACGGAT
GTGGGAAGGAGTAGGGCAAGATTGGACATCTAAGAGGCGCCCACAATGGC
AGGAGGAGGAGGAGAAAGTGGGGGAGGAGCAGGGGAATATGGTAGTGGAT
TACCACCTGATGCCGCCGTCGGCGCCACCGTTGCAGTACGAGGAAGAAGA
CGAGCACGAGAGGGGGGAGGGGAGAGAAGCGGGGGGAGAAAGATTGGTGT
TCCCGACAGCTAATCCTACTGATAGAAGGTTCTCGCCGCCTTCTTCGTCA
TCGTCGTCTTCAGATGGGGCAGCAACGGCGAGAAAGAAAGGAAGAGAAGG
GGGAGAGGGAGGAGGAGGAGGAGCAGCAGATGCGAACGCGGTTTTGTTGT
ATCAAACCTTGTCGTTATTAGCCGAGAGGATGAAGACACTTGAGGACCGG
CTGGAGCATTTAGGTATCATGGATGGGGGACGGGTAGGGATGGCGACGAT
CCCTATCAGCCACCACCACCACCACCAGCAGCAACAGCAGCAGCAACAGC
AGCAGCAACAGCAGTGGGGTCGAGAACAAGAGGGTCACTAG back to top
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