NO02G01770, NO02G01770 (gene) Nannochloropsis oceanica

Overview
NameNO02G01770
Unique NameNO02G01770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1838
Alignment locationchr2:518845..520682 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:518845..520682 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO02G01770 vs. NCBI_GenBank
Match: EWM30524.1 (hypothetical protein Naga_100013g24 [Nannochloropsis gaditana])

HSP 1 Score: 200.3 bits (508), Expect = 9.000e-48
Identity = 117/250 (46.80%), Postives = 151/250 (60.40%), Query Frame = 0 
Query:   67 SPCTDRRLRWRALMMSISMIVGVVAFVLVSVILFTPRGHRRSDENDTGM--ALDSYPSPFSSHDHEPQHGEDDQPYLLAEKAAEIILGSAGTPTHTTXXXXXXXXXXDSGSPSYPTSAPDNPNIHIPVTMGCMEAKCEAWMAAMGKNHGDPANLVLLDCIQRTGMSADSAKRCFANSNVTASPVRMGLYRCAVCKACMPPQSKNEKAALCQISPTSSSSTAAPVSSTDITSPPAPSPSDWGRYMPSGYVP 315
            SP T+RRL+WRAL++++S ++ + A  LV VIL T R      E   G    L ++PS       +    ED+QPYLLA      + G  G                 + SP YP+SAP++PNI IPVTMGC+EA CE+WMAA+G++HGD ANL LLDCIQRTGMSAD  + CFA S+VT S  R+GLY+CAVC+ C+ PQSK EKAALCQ       ++A    S   +    PS S W RY+P G+ P
Sbjct:   62 SPRTERRLQWRALLLAVSTVL-LTACFLVVVILVTGRTLASPHETSPGKDGPLKTFPSLSPKDSFK---AEDEQPYLLAVDTVSNVKG--GATDAFPGAYLAKASSHANPSPGYPSSAPEDPNIKIPVTMGCLEAMCESWMAALGQHHGDGANLTLLDCIQRTGMSADGTRACFAMSHVTDSAERVGLYQCAVCEGCLAPQSKEEKAALCQTGSGKGKTSAK--RSAPSSHASTPSASAWDRYVPKGFAP 303
The following BLAST results are available for this feature:
BLAST of NO02G01770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30524.19.000e-4846.80hypothetical protein Naga_100013g24 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006804NSK006804Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01770.1NO02G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574047gene_761Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g24gene184Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01770.1NO02G01770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01770 ID=NO02G01770|Name=NO02G01770|organism=Nannochloropsis oceanica|type=gene|length=1838bp
TTTTCGTATAGTTCGTCCCTTCCGCCGAGATGAACAGCAGCACTGCTAGA
AAATTTCGTCAAGCGCAGTGAGCTTTCATTTCTCTCAGAGAGTGTTAAAG
AAGAGCGTAGAAGTAAAACGCTCCATGTGCGATGCATGCATACGTGCTCA
ATCCAACACATTTGTCCGAATGGTATGTAAGGAGTAGCACTGAATGGAAA
TGGCGTTCAGCATGACCCCTTGCGGCCACTGCCGCCGTCGCGGGTAATGC
AATCCCCAAGGCCCGAACAGCCTGCTGGCACCCCTCCACCCGGCACCGTA
TGTCGCCACCGTGGCCAAGTAGTCCTCTGCTCATCGTTTTTGTCGAAAAA
GTCAAAACTCTGGGGGAGATTTTCCTCTGCAGGAGCAAAAGGCCTAAAAG
ACCCCTGGACTTTCAATAGTCCATAATGTGTACCATGTGAACGAGCTTTG
ACCATGGTCAATATCGATCTCACGTTCTTCGGAAAAAATGATAATTCATC
GGCATGTGGAAAAAGAAGTGCTCGCCGAAACATACTCCCCCTTGATGCCC
TCACGTACATGAATCCATGCTTCTCCTCTTTTCTTGCACGCGCAGACGGC
CTTGTCGCCAGCAGGAGACGTTAGCTAGAGGTCAGACTTAAGCTTCTCCA
CCCCACGCTGAAGGCATGGAATCTGCGCCACCGCCCCCGCCACCGGCCAT
TGTGGTGCGACAAGAGTCCGTCACTTGGCCTGCGGACTCGCCTCCGCCTA
ACCCCACCAACTATGGCTCCTTCTCCTTCTTCCCCCCTGCTTTGGAGTCT
TCTACTCTCTTGCCGTCCTCCTCTCTTCCACCCTCGTCTACAGCCGCTGC
GTACATTGCCCGAAGCCCCTGCACAGACCGTCGTTTGCGGTGGCGGGCAT
TGATGATGTCCATTTCTATGATCGTGGGTGTTGTTGCATTCGTGCTGGTA
TCTGTAATTTTGTTCACACCGCGTGGGCACAGACGCTCAGATGAGAATGA
CACGGGCATGGCCTTGGACTCGTACCCCTCTCCCTTTTCCTCCCACGACC
ATGAACCCCAGCACGGTGAAGATGACCAGCCTTATCTCCTCGCTGAGAAA
GCTGCAGAAATTATTCTCGGGAGCGCAGGCACCCCCACCCACACCACAGC
CACAACCAGTACAGCTGCTGCCGTTGCCGATTCCGGTAGTCCAAGCTACC
CTACAAGCGCCCCTGACAATCCAAACATTCACATCCCTGTCACGATGGGC
TGCATGGAGGCAAAGTGTGAGGCATGGATGGCGGCTATGGGGAAGAACCA
CGGGGATCCAGCTAATTTGGTTCTTCTGGACTGCATTCAACGCACAGGCA
TGTCTGCTGATAGCGCCAAAAGATGTTTTGCTAATTCGAATGTAACGGCA
TCGCCTGTCCGCATGGGATTATACCGATGCGCCGTTTGCAAAGCGTGCAT
GCCGCCACAAAGCAAGAACGAGAAAGCTGCGCTTTGTCAAATAAGTCCTA
CCAGCAGCAGCAGCACCGCCGCACCGGTGTCATCAACAGATATCACGTCG
CCGCCTGCGCCCTCGCCAAGTGATTGGGGCCGGTATATGCCCAGTGGCTA
TGTACCATAACTAGATATGCTCATGATTCGAACAAGAAAAGTGTTAAATG
TGTATAAAACCCCTGATTTGAGAAATGGGAAAGTGACAAAGTGGAAGCAA
ACGATGAGAAGAGCGAAGCTGCTTCATAAAGCCAAACTATATGGATAGGA
ATAGGAATGCCCCGAGGTGTCTGTATTGAGAAATTAAAGGAAAGAGGAAA
TGAATCGAAGGATTTATCGAGCAATTCCTTAGTATTTG
back to top

protein sequence of NO02G01770.1

>NO02G01770.1-protein ID=NO02G01770.1-protein|Name=NO02G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MESAPPPPPPAIVVRQESVTWPADSPPPNPTNYGSFSFFPPALESSTLLP
SSSLPPSSTAAAYIARSPCTDRRLRWRALMMSISMIVGVVAFVLVSVILF
TPRGHRRSDENDTGMALDSYPSPFSSHDHEPQHGEDDQPYLLAEKAAEII
LGSAGTPTHTTATTSTAAAVADSGSPSYPTSAPDNPNIHIPVTMGCMEAK
CEAWMAAMGKNHGDPANLVLLDCIQRTGMSADSAKRCFANSNVTASPVRM
GLYRCAVCKACMPPQSKNEKAALCQISPTSSSSTAAPVSSTDITSPPAPS
PSDWGRYMPSGYVP*
back to top
Synonyms
Publications