NO02G01770.1, NO02G01770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01770.1
Unique NameNO02G01770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1838
Alignment locationchr2:518845..520682 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:518845..520682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G01770.1 vs.
Match: EWM30524.1 (hypothetical protein Naga_100013g24 [Nannochloropsis gaditana])

HSP 1 Score: 235.7 bits (600), Expect = 1.900e-58
Identity = 152/316 (48.10%), Postives = 196/316 (62.03%), Query Frame = 0
Query:    1 MESAPPPPPPAIVVRQESVTWPADSPPPNPTNYGSFSFFPPALESSTLLPSSSLPPSSTAAAYIARSPCTDRRLRWRALMMSISMIVGVVAFVLVSVILFTPRGHRRSDENDTGM--ALDSYPSPFSSHDHEPQHGEDDQPYLLAEKAAEIILGSAGTPTHTTATTSTAAAVADSGSPSYPTSAPDNPNIHIPVTMGCMEAKCEAWMAAMGKNHGDPANLVLLDCIQRTGMSADSAKRCFANSNVTASPVRMGLYRCAVCKACMPPQSKNEKAALCQISPTSSSSTAAPVSSTDITSPPAPSPSDWGRYMPSGYVP 315
            M S+  P  P  VVR+ESVTWP D PPP   +YGSFS    + ++STLLPSS     ST A     SP T+RRL+WRAL++++S ++    F++V VIL T R      E   G    L ++PS       +    ED+QPYLLA      + G A T     A  + A++ A+  SP YP+SAP++PNI IPVTMGC+EA CE+WMAA+G++HGD ANL LLDCIQRTGMSAD  + CFA S+VT S  R+GLY+CAVC+ C+ PQSK EKAALCQ       ++A    S   +    PS S W RY+P G+ P
Sbjct:    1 MASSVVPVRPPTVVRRESVTWPTDDPPPQLKSYGSFSSNWRS-QASTLLPSSQ----STNAGNFVHSPRTERRLQWRALLLAVSTVLLTACFLVV-VILVTGRTLASPHETSPGKDGPLKTFPSLSPKDSFK---AEDEQPYLLAVDTVSNVKGGA-TDAFPGAYLAKASSHANP-SPGYPSSAPEDPNIKIPVTMGCLEAMCESWMAALGQHHGDGANLTLLDCIQRTGMSADGTRACFAMSHVTDSAERVGLYQCAVCEGCLAPQSKEEKAALCQTGSGKGKTSAK--RSAPSSHASTPSASAWDRYVPKGFAP 303          
The following BLAST results are available for this feature:
BLAST of NO02G01770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30524.11.900e-5848.10hypothetical protein Naga_100013g24 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01770NO02G01770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01770.1NO02G01770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01770.1.cds1NO02G01770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01770.1 ID=NO02G01770.1|Name=NO02G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1838bp
TTTTCGTATAGTTCGTCCCTTCCGCCGAGATGAACAGCAGCACTGCTAGA
AAATTTCGTCAAGCGCAGTGAGCTTTCATTTCTCTCAGAGAGTGTTAAAG
AAGAGCGTAGAAGTAAAACGCTCCATGTGCGATGCATGCATACGTGCTCA
ATCCAACACATTTGTCCGAATGGTATGTAAGGAGTAGCACTGAATGGAAA
TGGCGTTCAGCATGACCCCTTGCGGCCACTGCCGCCGTCGCGGGTAATGC
AATCCCCAAGGCCCGAACAGCCTGCTGGCACCCCTCCACCCGGCACCGTA
TGTCGCCACCGTGGCCAAGTAGTCCTCTGCTCATCGTTTTTGTCGAAAAA
GTCAAAACTCTGGGGGAGATTTTCCTCTGCAGGAGCAAAAGGCCTAAAAG
ACCCCTGGACTTTCAATAGTCCATAATGTGTACCATGTGAACGAGCTTTG
ACCATGGTCAATATCGATCTCACGTTCTTCGGAAAAAATGATAATTCATC
GGCATGTGGAAAAAGAAGTGCTCGCCGAAACATACTCCCCCTTGATGCCC
TCACGTACATGAATCCATGCTTCTCCTCTTTTCTTGCACGCGCAGACGGC
CTTGTCGCCAGCAGGAGACGTTAGCTAGAGGTCAGACTTAAGCTTCTCCA
CCCCACGCTGAAGGCATGGAATCTGCGCCACCGCCCCCGCCACCGGCCAT
TGTGGTGCGACAAGAGTCCGTCACTTGGCCTGCGGACTCGCCTCCGCCTA
ACCCCACCAACTATGGCTCCTTCTCCTTCTTCCCCCCTGCTTTGGAGTCT
TCTACTCTCTTGCCGTCCTCCTCTCTTCCACCCTCGTCTACAGCCGCTGC
GTACATTGCCCGAAGCCCCTGCACAGACCGTCGTTTGCGGTGGCGGGCAT
TGATGATGTCCATTTCTATGATCGTGGGTGTTGTTGCATTCGTGCTGGTA
TCTGTAATTTTGTTCACACCGCGTGGGCACAGACGCTCAGATGAGAATGA
CACGGGCATGGCCTTGGACTCGTACCCCTCTCCCTTTTCCTCCCACGACC
ATGAACCCCAGCACGGTGAAGATGACCAGCCTTATCTCCTCGCTGAGAAA
GCTGCAGAAATTATTCTCGGGAGCGCAGGCACCCCCACCCACACCACAGC
CACAACCAGTACAGCTGCTGCCGTTGCCGATTCCGGTAGTCCAAGCTACC
CTACAAGCGCCCCTGACAATCCAAACATTCACATCCCTGTCACGATGGGC
TGCATGGAGGCAAAGTGTGAGGCATGGATGGCGGCTATGGGGAAGAACCA
CGGGGATCCAGCTAATTTGGTTCTTCTGGACTGCATTCAACGCACAGGCA
TGTCTGCTGATAGCGCCAAAAGATGTTTTGCTAATTCGAATGTAACGGCA
TCGCCTGTCCGCATGGGATTATACCGATGCGCCGTTTGCAAAGCGTGCAT
GCCGCCACAAAGCAAGAACGAGAAAGCTGCGCTTTGTCAAATAAGTCCTA
CCAGCAGCAGCAGCACCGCCGCACCGGTGTCATCAACAGATATCACGTCG
CCGCCTGCGCCCTCGCCAAGTGATTGGGGCCGGTATATGCCCAGTGGCTA
TGTACCATAACTAGATATGCTCATGATTCGAACAAGAAAAGTGTTAAATG
TGTATAAAACCCCTGATTTGAGAAATGGGAAAGTGACAAAGTGGAAGCAA
ACGATGAGAAGAGCGAAGCTGCTTCATAAAGCCAAACTATATGGATAGGA
ATAGGAATGCCCCGAGGTGTCTGTATTGAGAAATTAAAGGAAAGAGGAAA
TGAATCGAAGGATTTATCGAGCAATTCCTTAGTATTTG
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protein sequence of NO02G01770.1

>NO02G01770.1-protein ID=NO02G01770.1-protein|Name=NO02G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MESAPPPPPPAIVVRQESVTWPADSPPPNPTNYGSFSFFPPALESSTLLP
SSSLPPSSTAAAYIARSPCTDRRLRWRALMMSISMIVGVVAFVLVSVILF
TPRGHRRSDENDTGMALDSYPSPFSSHDHEPQHGEDDQPYLLAEKAAEII
LGSAGTPTHTTATTSTAAAVADSGSPSYPTSAPDNPNIHIPVTMGCMEAK
CEAWMAAMGKNHGDPANLVLLDCIQRTGMSADSAKRCFANSNVTASPVRM
GLYRCAVCKACMPPQSKNEKAALCQISPTSSSSTAAPVSSTDITSPPAPS
PSDWGRYMPSGYVP*
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mRNA from alignment at chr2:518845..520682+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01770.1 ID=NO02G01770.1|Name=NO02G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1838bp|location=Sequence derived from alignment at chr2:518845..520682+ (Nannochloropsis oceanica)
TTTTCGTATAGTTCGTCCCTTCCGCCGAGATGAACAGCAGCACTGCTAGA AAATTTCGTCAAGCGCAGTGAGCTTTCATTTCTCTCAGAGAGTGTTAAAG AAGAGCGTAGAAGTAAAACGCTCCATGTGCGATGCATGCATACGTGCTCA ATCCAACACATTTGTCCGAATGGTATGTAAGGAGTAGCACTGAATGGAAA TGGCGTTCAGCATGACCCCTTGCGGCCACTGCCGCCGTCGCGGGTAATGC AATCCCCAAGGCCCGAACAGCCTGCTGGCACCCCTCCACCCGGCACCGTA TGTCGCCACCGTGGCCAAGTAGTCCTCTGCTCATCGTTTTTGTCGAAAAA GTCAAAACTCTGGGGGAGATTTTCCTCTGCAGGAGCAAAAGGCCTAAAAG ACCCCTGGACTTTCAATAGTCCATAATGTGTACCATGTGAACGAGCTTTG ACCATGGTCAATATCGATCTCACGTTCTTCGGAAAAAATGATAATTCATC GGCATGTGGAAAAAGAAGTGCTCGCCGAAACATACTCCCCCTTGATGCCC TCACGTACATGAATCCATGCTTCTCCTCTTTTCTTGCACGCGCAGACGGC CTTGTCGCCAGCAGGAGACGTTAGCTAGAGGTCAGACTTAAGCTTCTCCA CCCCACGCTGAAGGCATGGAATCTGCGCCACCGCCCCCGCCACCGGCCAT TGTGGTGCGACAAGAGTCCGTCACTTGGCCTGCGGACTCGCCTCCGCCTA ACCCCACCAACTATGGCTCCTTCTCCTTCTTCCCCCCTGCTTTGGAGTCT TCTACTCTCTTGCCGTCCTCCTCTCTTCCACCCTCGTCTACAGCCGCTGC GTACATTGCCCGAAGCCCCTGCACAGACCGTCGTTTGCGGTGGCGGGCAT TGATGATGTCCATTTCTATGATCGTGGGTGTTGTTGCATTCGTGCTGGTA TCTGTAATTTTGTTCACACCGCGTGGGCACAGACGCTCAGATGAGAATGA CACGGGCATGGCCTTGGACTCGTACCCCTCTCCCTTTTCCTCCCACGACC ATGAACCCCAGCACGGTGAAGATGACCAGCCTTATCTCCTCGCTGAGAAA GCTGCAGAAATTATTCTCGGGAGCGCAGGCACCCCCACCCACACCACAGC CACAACCAGTACAGCTGCTGCCGTTGCCGATTCCGGTAGTCCAAGCTACC CTACAAGCGCCCCTGACAATCCAAACATTCACATCCCTGTCACGATGGGC TGCATGGAGGCAAAGTGTGAGGCATGGATGGCGGCTATGGGGAAGAACCA CGGGGATCCAGCTAATTTGGTTCTTCTGGACTGCATTCAACGCACAGGCA TGTCTGCTGATAGCGCCAAAAGATGTTTTGCTAATTCGAATGTAACGGCA TCGCCTGTCCGCATGGGATTATACCGATGCGCCGTTTGCAAAGCGTGCAT GCCGCCACAAAGCAAGAACGAGAAAGCTGCGCTTTGTCAAATAAGTCCTA CCAGCAGCAGCAGCACCGCCGCACCGGTGTCATCAACAGATATCACGTCG CCGCCTGCGCCCTCGCCAAGTGATTGGGGCCGGTATATGCCCAGTGGCTA TGTACCATAACTAGATATGCTCATGATTCGAACAAGAAAAGTGTTAAATG TGTATAAAACCCCTGATTTGAGAAATGGGAAAGTGACAAAGTGGAAGCAA ACGATGAGAAGAGCGAAGCTGCTTCATAAAGCCAAACTATATGGATAGGA ATAGGAATGCCCCGAGGTGTCTGTATTGAGAAATTAAAGGAAAGAGGAAA TGAATCGAAGGATTTATCGAGCAATTCCTTAGTATTTG
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Coding sequence (CDS) from alignment at chr2:518845..520682+

>NO02G01770.1 ID=NO02G01770.1|Name=NO02G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at chr2:518845..520682+ (Nannochloropsis oceanica)
ATGGAATCTGCGCCACCGCCCCCGCCACCGGCCATTGTGGTGCGACAAGA
GTCCGTCACTTGGCCTGCGGACTCGCCTCCGCCTAACCCCACCAACTATG
GCTCCTTCTCCTTCTTCCCCCCTGCTTTGGAGTCTTCTACTCTCTTGCCG
TCCTCCTCTCTTCCACCCTCGTCTACAGCCGCTGCGTACATTGCCCGAAG
CCCCTGCACAGACCGTCGTTTGCGGTGGCGGGCATTGATGATGTCCATTT
CTATGATCGTGGGTGTTGTTGCATTCGTGCTGGTATCTGTAATTTTGTTC
ACACCGCGTGGGCACAGACGCTCAGATGAGAATGACACGGGCATGGCCTT
GGACTCGTACCCCTCTCCCTTTTCCTCCCACGACCATGAACCCCAGCACG
GTGAAGATGACCAGCCTTATCTCCTCGCTGAGAAAGCTGCAGAAATTATT
CTCGGGAGCGCAGGCACCCCCACCCACACCACAGCCACAACCAGTACAGC
TGCTGCCGTTGCCGATTCCGGTAGTCCAAGCTACCCTACAAGCGCCCCTG
ACAATCCAAACATTCACATCCCTGTCACGATGGGCTGCATGGAGGCAAAG
TGTGAGGCATGGATGGCGGCTATGGGGAAGAACCACGGGGATCCAGCTAA
TTTGGTTCTTCTGGACTGCATTCAACGCACAGGCATGTCTGCTGATAGCG
CCAAAAGATGTTTTGCTAATTCGAATGTAACGGCATCGCCTGTCCGCATG
GGATTATACCGATGCGCCGTTTGCAAAGCGTGCATGCCGCCACAAAGCAA
GAACGAGAAAGCTGCGCTTTGTCAAATAAGTCCTACCAGCAGCAGCAGCA
CCGCCGCACCGGTGTCATCAACAGATATCACGTCGCCGCCTGCGCCCTCG
CCAAGTGATTGGGGCCGGTATATGCCCAGTGGCTATGTACCATAA
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Synonyms
Publications