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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:518845..520682 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01770.1 vs.
Match: EWM30524.1 (hypothetical protein Naga_100013g24 [Nannochloropsis gaditana]) HSP 1 Score: 235.7 bits (600), Expect = 1.900e-58 Identity = 152/316 (48.10%), Postives = 196/316 (62.03%), Query Frame = 0
Query: 1 MESAPPPPPPAIVVRQESVTWPADSPPPNPTNYGSFSFFPPALESSTLLPSSSLPPSSTAAAYIARSPCTDRRLRWRALMMSISMIVGVVAFVLVSVILFTPRGHRRSDENDTGM--ALDSYPSPFSSHDHEPQHGEDDQPYLLAEKAAEIILGSAGTPTHTTATTSTAAAVADSGSPSYPTSAPDNPNIHIPVTMGCMEAKCEAWMAAMGKNHGDPANLVLLDCIQRTGMSADSAKRCFANSNVTASPVRMGLYRCAVCKACMPPQSKNEKAALCQISPTSSSSTAAPVSSTDITSPPAPSPSDWGRYMPSGYVP 315
M S+ P P VVR+ESVTWP D PPP +YGSFS + ++STLLPSS ST A SP T+RRL+WRAL++++S ++ F++V VIL T R E G L ++PS + ED+QPYLLA + G A T A + A++ A+ SP YP+SAP++PNI IPVTMGC+EA CE+WMAA+G++HGD ANL LLDCIQRTGMSAD + CFA S+VT S R+GLY+CAVC+ C+ PQSK EKAALCQ ++A S + PS S W RY+P G+ P
Sbjct: 1 MASSVVPVRPPTVVRRESVTWPTDDPPPQLKSYGSFSSNWRS-QASTLLPSSQ----STNAGNFVHSPRTERRLQWRALLLAVSTVLLTACFLVV-VILVTGRTLASPHETSPGKDGPLKTFPSLSPKDSFK---AEDEQPYLLAVDTVSNVKGGA-TDAFPGAYLAKASSHANP-SPGYPSSAPEDPNIKIPVTMGCLEAMCESWMAALGQHHGDGANLTLLDCIQRTGMSADGTRACFAMSHVTDSAERVGLYQCAVCEGCLAPQSKEEKAALCQTGSGKGKTSAK--RSAPSSHASTPSASAWDRYVPKGFAP 303
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01770.1 ID=NO02G01770.1|Name=NO02G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1838bp TTTTCGTATAGTTCGTCCCTTCCGCCGAGATGAACAGCAGCACTGCTAGA AAATTTCGTCAAGCGCAGTGAGCTTTCATTTCTCTCAGAGAGTGTTAAAG AAGAGCGTAGAAGTAAAACGCTCCATGTGCGATGCATGCATACGTGCTCA ATCCAACACATTTGTCCGAATGGTATGTAAGGAGTAGCACTGAATGGAAA TGGCGTTCAGCATGACCCCTTGCGGCCACTGCCGCCGTCGCGGGTAATGC AATCCCCAAGGCCCGAACAGCCTGCTGGCACCCCTCCACCCGGCACCGTA TGTCGCCACCGTGGCCAAGTAGTCCTCTGCTCATCGTTTTTGTCGAAAAA GTCAAAACTCTGGGGGAGATTTTCCTCTGCAGGAGCAAAAGGCCTAAAAG ACCCCTGGACTTTCAATAGTCCATAATGTGTACCATGTGAACGAGCTTTG ACCATGGTCAATATCGATCTCACGTTCTTCGGAAAAAATGATAATTCATC GGCATGTGGAAAAAGAAGTGCTCGCCGAAACATACTCCCCCTTGATGCCC TCACGTACATGAATCCATGCTTCTCCTCTTTTCTTGCACGCGCAGACGGC CTTGTCGCCAGCAGGAGACGTTAGCTAGAGGTCAGACTTAAGCTTCTCCA CCCCACGCTGAAGGCATGGAATCTGCGCCACCGCCCCCGCCACCGGCCAT TGTGGTGCGACAAGAGTCCGTCACTTGGCCTGCGGACTCGCCTCCGCCTA ACCCCACCAACTATGGCTCCTTCTCCTTCTTCCCCCCTGCTTTGGAGTCT TCTACTCTCTTGCCGTCCTCCTCTCTTCCACCCTCGTCTACAGCCGCTGC GTACATTGCCCGAAGCCCCTGCACAGACCGTCGTTTGCGGTGGCGGGCAT TGATGATGTCCATTTCTATGATCGTGGGTGTTGTTGCATTCGTGCTGGTA TCTGTAATTTTGTTCACACCGCGTGGGCACAGACGCTCAGATGAGAATGA CACGGGCATGGCCTTGGACTCGTACCCCTCTCCCTTTTCCTCCCACGACC ATGAACCCCAGCACGGTGAAGATGACCAGCCTTATCTCCTCGCTGAGAAA GCTGCAGAAATTATTCTCGGGAGCGCAGGCACCCCCACCCACACCACAGC CACAACCAGTACAGCTGCTGCCGTTGCCGATTCCGGTAGTCCAAGCTACC CTACAAGCGCCCCTGACAATCCAAACATTCACATCCCTGTCACGATGGGC TGCATGGAGGCAAAGTGTGAGGCATGGATGGCGGCTATGGGGAAGAACCA CGGGGATCCAGCTAATTTGGTTCTTCTGGACTGCATTCAACGCACAGGCA TGTCTGCTGATAGCGCCAAAAGATGTTTTGCTAATTCGAATGTAACGGCA TCGCCTGTCCGCATGGGATTATACCGATGCGCCGTTTGCAAAGCGTGCAT GCCGCCACAAAGCAAGAACGAGAAAGCTGCGCTTTGTCAAATAAGTCCTA CCAGCAGCAGCAGCACCGCCGCACCGGTGTCATCAACAGATATCACGTCG CCGCCTGCGCCCTCGCCAAGTGATTGGGGCCGGTATATGCCCAGTGGCTA TGTACCATAACTAGATATGCTCATGATTCGAACAAGAAAAGTGTTAAATG TGTATAAAACCCCTGATTTGAGAAATGGGAAAGTGACAAAGTGGAAGCAA ACGATGAGAAGAGCGAAGCTGCTTCATAAAGCCAAACTATATGGATAGGA ATAGGAATGCCCCGAGGTGTCTGTATTGAGAAATTAAAGGAAAGAGGAAA TGAATCGAAGGATTTATCGAGCAATTCCTTAGTATTTG back to topprotein sequence of NO02G01770.1 >NO02G01770.1-protein ID=NO02G01770.1-protein|Name=NO02G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp MESAPPPPPPAIVVRQESVTWPADSPPPNPTNYGSFSFFPPALESSTLLP SSSLPPSSTAAAYIARSPCTDRRLRWRALMMSISMIVGVVAFVLVSVILF TPRGHRRSDENDTGMALDSYPSPFSSHDHEPQHGEDDQPYLLAEKAAEII LGSAGTPTHTTATTSTAAAVADSGSPSYPTSAPDNPNIHIPVTMGCMEAK CEAWMAAMGKNHGDPANLVLLDCIQRTGMSADSAKRCFANSNVTASPVRM GLYRCAVCKACMPPQSKNEKAALCQISPTSSSSTAAPVSSTDITSPPAPS PSDWGRYMPSGYVP* back to topmRNA from alignment at chr2:518845..520682+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01770.1 ID=NO02G01770.1|Name=NO02G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1838bp|location=Sequence derived from alignment at chr2:518845..520682+ (Nannochloropsis oceanica) TTTTCGTATAGTTCGTCCCTTCCGCCGAGATGAACAGCAGCACTGCTAGA
AAATTTCGTCAAGCGCAGTGAGCTTTCATTTCTCTCAGAGAGTGTTAAAG
AAGAGCGTAGAAGTAAAACGCTCCATGTGCGATGCATGCATACGTGCTCA
ATCCAACACATTTGTCCGAATGGTATGTAAGGAGTAGCACTGAATGGAAA
TGGCGTTCAGCATGACCCCTTGCGGCCACTGCCGCCGTCGCGGGTAATGC
AATCCCCAAGGCCCGAACAGCCTGCTGGCACCCCTCCACCCGGCACCGTA
TGTCGCCACCGTGGCCAAGTAGTCCTCTGCTCATCGTTTTTGTCGAAAAA
GTCAAAACTCTGGGGGAGATTTTCCTCTGCAGGAGCAAAAGGCCTAAAAG
ACCCCTGGACTTTCAATAGTCCATAATGTGTACCATGTGAACGAGCTTTG
ACCATGGTCAATATCGATCTCACGTTCTTCGGAAAAAATGATAATTCATC
GGCATGTGGAAAAAGAAGTGCTCGCCGAAACATACTCCCCCTTGATGCCC
TCACGTACATGAATCCATGCTTCTCCTCTTTTCTTGCACGCGCAGACGGC
CTTGTCGCCAGCAGGAGACGTTAGCTAGAGGTCAGACTTAAGCTTCTCCA
CCCCACGCTGAAGGCATGGAATCTGCGCCACCGCCCCCGCCACCGGCCAT
TGTGGTGCGACAAGAGTCCGTCACTTGGCCTGCGGACTCGCCTCCGCCTA
ACCCCACCAACTATGGCTCCTTCTCCTTCTTCCCCCCTGCTTTGGAGTCT
TCTACTCTCTTGCCGTCCTCCTCTCTTCCACCCTCGTCTACAGCCGCTGC
GTACATTGCCCGAAGCCCCTGCACAGACCGTCGTTTGCGGTGGCGGGCAT
TGATGATGTCCATTTCTATGATCGTGGGTGTTGTTGCATTCGTGCTGGTA
TCTGTAATTTTGTTCACACCGCGTGGGCACAGACGCTCAGATGAGAATGA
CACGGGCATGGCCTTGGACTCGTACCCCTCTCCCTTTTCCTCCCACGACC
ATGAACCCCAGCACGGTGAAGATGACCAGCCTTATCTCCTCGCTGAGAAA
GCTGCAGAAATTATTCTCGGGAGCGCAGGCACCCCCACCCACACCACAGC
CACAACCAGTACAGCTGCTGCCGTTGCCGATTCCGGTAGTCCAAGCTACC
CTACAAGCGCCCCTGACAATCCAAACATTCACATCCCTGTCACGATGGGC
TGCATGGAGGCAAAGTGTGAGGCATGGATGGCGGCTATGGGGAAGAACCA
CGGGGATCCAGCTAATTTGGTTCTTCTGGACTGCATTCAACGCACAGGCA
TGTCTGCTGATAGCGCCAAAAGATGTTTTGCTAATTCGAATGTAACGGCA
TCGCCTGTCCGCATGGGATTATACCGATGCGCCGTTTGCAAAGCGTGCAT
GCCGCCACAAAGCAAGAACGAGAAAGCTGCGCTTTGTCAAATAAGTCCTA
CCAGCAGCAGCAGCACCGCCGCACCGGTGTCATCAACAGATATCACGTCG
CCGCCTGCGCCCTCGCCAAGTGATTGGGGCCGGTATATGCCCAGTGGCTA
TGTACCATAACTAGATATGCTCATGATTCGAACAAGAAAAGTGTTAAATG
TGTATAAAACCCCTGATTTGAGAAATGGGAAAGTGACAAAGTGGAAGCAA
ACGATGAGAAGAGCGAAGCTGCTTCATAAAGCCAAACTATATGGATAGGA
ATAGGAATGCCCCGAGGTGTCTGTATTGAGAAATTAAAGGAAAGAGGAAA
TGAATCGAAGGATTTATCGAGCAATTCCTTAGTATTTG back to topCoding sequence (CDS) from alignment at chr2:518845..520682+ >NO02G01770.1 ID=NO02G01770.1|Name=NO02G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at chr2:518845..520682+ (Nannochloropsis oceanica) ATGGAATCTGCGCCACCGCCCCCGCCACCGGCCATTGTGGTGCGACAAGA GTCCGTCACTTGGCCTGCGGACTCGCCTCCGCCTAACCCCACCAACTATG GCTCCTTCTCCTTCTTCCCCCCTGCTTTGGAGTCTTCTACTCTCTTGCCG TCCTCCTCTCTTCCACCCTCGTCTACAGCCGCTGCGTACATTGCCCGAAG CCCCTGCACAGACCGTCGTTTGCGGTGGCGGGCATTGATGATGTCCATTT CTATGATCGTGGGTGTTGTTGCATTCGTGCTGGTATCTGTAATTTTGTTC ACACCGCGTGGGCACAGACGCTCAGATGAGAATGACACGGGCATGGCCTT GGACTCGTACCCCTCTCCCTTTTCCTCCCACGACCATGAACCCCAGCACG GTGAAGATGACCAGCCTTATCTCCTCGCTGAGAAAGCTGCAGAAATTATT CTCGGGAGCGCAGGCACCCCCACCCACACCACAGCCACAACCAGTACAGC TGCTGCCGTTGCCGATTCCGGTAGTCCAAGCTACCCTACAAGCGCCCCTG ACAATCCAAACATTCACATCCCTGTCACGATGGGCTGCATGGAGGCAAAG TGTGAGGCATGGATGGCGGCTATGGGGAAGAACCACGGGGATCCAGCTAA TTTGGTTCTTCTGGACTGCATTCAACGCACAGGCATGTCTGCTGATAGCG CCAAAAGATGTTTTGCTAATTCGAATGTAACGGCATCGCCTGTCCGCATG GGATTATACCGATGCGCCGTTTGCAAAGCGTGCATGCCGCCACAAAGCAA GAACGAGAAAGCTGCGCTTTGTCAAATAAGTCCTACCAGCAGCAGCAGCA CCGCCGCACCGGTGTCATCAACAGATATCACGTCGCCGCCTGCGCCCTCG CCAAGTGATTGGGGCCGGTATATGCCCAGTGGCTATGTACCATAA back to top
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