NO02G01690, NO02G01690 (gene) Nannochloropsis oceanica

Overview
NameNO02G01690
Unique NameNO02G01690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2503
Alignment locationchr2:497262..499764 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:497262..499764 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO02G01690 vs. NCBI_GenBank
Match: EWM30517.1 (hypothetical protein Naga_100013g33 [Nannochloropsis gaditana])

HSP 1 Score: 291.6 bits (745), Expect = 3.500e-75
Identity = 157/195 (80.51%), Postives = 178/195 (91.28%), Query Frame = 0
Query:  147 RQLFLLALLPAVAVAFMGPARMPRG-VRMMSDVMDKPKVSPAFSTSPPTGGENKGGALVPINTQTIETSAAIVSTSAGIVFLGPLLGVLLGLITNYAAKADNEVGEAARGVGKTALEVFNYIAKVNSKYQIGAKVSDSASSLVAKLKENEGEDSVVSKLEETLETTKTKLTDLDEQYDLVTKAKSAVGLAVDFSN 341
            RQLFLLALLPAVA++FMG  R+ RG VRMMSD+MDKPK+SPA ST PP GGE K  ALVP+N QTIETSAAIV TSAGIVFLGP+LG++LGL+TNYAAK DN+VGEAARGVGKTALEVFNYI K+NSKYQIG KVS+SASSLV+KLKEN+GEDSVV+KLEET E+TKTKL+DLD++YDLV+KAKSAVGL VDFSN
Sbjct:    4 RQLFLLALLPAVALSFMGHPRVSRGSVRMMSDLMDKPKISPAVST-PPAGGEPKSTALVPVNPQTIETSAAIVGTSAGIVFLGPVLGIVLGLLTNYAAKTDNDVGEAARGVGKTALEVFNYIVKINSKYQIGTKVSNSASSLVSKLKENDGEDSVVAKLEETFESTKTKLSDLDQEYDLVSKAKSAVGLTVDFSN 197          
BLAST of NO02G01690 vs. NCBI_GenBank
Match: GAX21705.1 (hypothetical protein FisN_3Hh497 [Fistulifera solaris])

HSP 1 Score: 96.3 bits (238), Expect = 2.200e-16
Identity = 50/148 (33.78%), Postives = 88/148 (59.46%), Query Frame = 0
Query:  191 SPPTGGENKGGALVPINTQTIETSAAIVSTSAGIVFLGPLLGVLLGLITNYAAKADNEVGEAARGVGKTALEVFNYIAKVNSKYQIGAKVSDSASSLVAKLKENEGED-SVVSKLEETLETTKTKLTDLDEQYDLVTKAKSAVGLAVD 338
            +PP    + GGALVPI  +T+E +A ++  + G    GPL G++     NY +K D +V +  + V KT+++VFNY+A ++ KY++  K   S  + +  LK+ E  D + + K+E+ L  T  K+ +++++YDLV    +A+G+  D
Sbjct:   39 APPAPKADVGGALVPIKEETVEFTAGLLGGAFGFAVGGPLFGLIAAAAANYVSKMDGDVSDVVQAVSKTSIQVFNYLATLDKKYEVLKKAQGSLENALDNLKKQESVDPATIEKVEQALANTNKKIKEVNDEYDLVGGGVTALGVVGD 186          
BLAST of NO02G01690 vs. NCBI_GenBank
Match: OEU18599.1 (hypothetical protein FRACYDRAFT_268367 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 95.9 bits (237), Expect = 2.800e-16
Identity = 54/158 (34.18%), Postives = 92/158 (58.23%), Query Frame = 0
Query:  181 KPKVSPAFSTSPPTGGENKGGALVPINTQTIETSAAIVSTSAGIVFLGPLLGVLLGLITNYAAKADNEVGEAARGVGKTALEVFNYIAKVNSKYQIGAKVSDSASSLVAKLKENEGED-SVVSKLEETLETTKTKLTDLDEQYDLVTKAKSAVGLAVD 338
            +P V+  F +  P      GG LV I  +T+E +A ++   AG    GPLLG +     NY +K++NE GE    V K+ALE++NY+A ++ KY++    + S  S + KLK  +  D + + K+E  L +T+ K+++++++YDLV    +A+G+  D
Sbjct:   31 RPAVTTTFMSEEPEVA--AGGKLVAIKEETVEFTAGLIGGVAGFAVGGPLLGAVGAAAANYVSKSENEAGEIVGAVSKSALEIYNYLATLDDKYEVLGAAASSLESALIKLKSQDKIDPAAIEKVESALASTQAKISEVNDEYDLVGSGLTALGVVGD 186          
BLAST of NO02G01690 vs. NCBI_GenBank
Match: GAX10296.1 (hypothetical protein FisN_3Lh497 [Fistulifera solaris])

HSP 1 Score: 95.9 bits (237), Expect = 2.800e-16
Identity = 51/148 (34.46%), Postives = 87/148 (58.78%), Query Frame = 0
Query:  191 SPPTGGENKGGALVPINTQTIETSAAIVSTSAGIVFLGPLLGVLLGLITNYAAKADNEVGEAARGVGKTALEVFNYIAKVNSKYQIGAKVSDSASSLVAKLKENEGED-SVVSKLEETLETTKTKLTDLDEQYDLVTKAKSAVGLAVD 338
            +PP    + GGALVPI  +T+E +A ++  + G    GPL GV+     NY +K D +V +  + V KT+++VFNY+A ++ KY++  K   S  + +  LK+ E  D + + K+E  L  T  K+ +++++YDLV    +A+G+  D
Sbjct:   39 APPAPKADVGGALVPIKEETVEFTAGLLGGAFGFAVGGPLFGVIAAAAANYVSKMDGDVSDVVQAVSKTSIQVFNYLATLDKKYEVLKKAQGSLENALDNLKKQESVDPATIEKVETALANTNKKIKEVNDEYDLVGGGITALGVVGD 186          
BLAST of NO02G01690 vs. NCBI_GenBank
Match: CBJ33389.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 94.7 bits (234), Expect = 6.300e-16
Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = 0
Query:  187 AFSTSPPTGGENKGGALVPINTQTIETSAAIVSTSAGIVFLGPLLGVLLGLITNYAAKADNEVGEAARGVGKTALEVFNYIAKVNSKYQIGAKVSDSASSLVAKLKENEGEDSVVSKLEETLETTKTKLTDLDEQYDLVTKAKSAVGLAVDFSN 341
            A +  P    E KG   V +NT+  E SA ++   AG    GP+L  +L +  NY +K +NE G A RGV   A+E FN++  +NSKY +  K        V +LK        +  +E+T++   ++ T L  +YDL  KAK A+G+A + ++
Sbjct:    2 AVTDEPKEKEETKGALTVAVNTENTEFSAGVLGGLAGFFVGGPVLAAVLAVAANYGSKQENEAGVAVRGVSANAIEAFNFLTTLNSKYDVTGKAGAQLDKAVTELKSTGEAGDTIXXVEKTVKDLTSQATKLSSEYDLPAKAKQALGVAGELAD 155          
BLAST of NO02G01690 vs. NCBI_GenBank
Match: XP_002296715.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED86916.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 93.6 bits (231), Expect = 1.400e-15
Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 0
Query:  185 SPAFSTSPPTGGENKGGALVPINTQTIETSAAIVSTSAGIVFLGPLLGVLLGLITNYAAKADNEVGEAARGVGKTALEVFNYIAKVNSKYQIGAKVSDSASSLVAKLKENEGED-SVVSKLEETLETTKTKLTDLDEQYDLVTKAKSAVGLAVD 338
            S  F +  P     K GA+VPIN +T+E +A I+    G    GP LG +     NYA+K D EVGE    V KT +E++NY AK++SKY++  K      S + K+K +E  +          L  T  K+ +++++YDLV    +A+G+  D
Sbjct:   30 STLFMSEEPAAPAIKSGAIVPINEETVEFTAGILGGVVGFALGGPALGAITAAAANYASKTDAEVGEVLSAVSKTTIEIYNYFAKLDSKYEVLDKAKAQLESALDKVKSSENANPEXXXXXXXXLSNTNKKIREINDEYDLVGTGMTALGVVGD 183          
BLAST of NO02G01690 vs. NCBI_GenBank
Match: XP_002176613.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51076.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 90.9 bits (224), Expect = 9.100e-15
Identity = 47/134 (35.07%), Postives = 82/134 (61.19%), Query Frame = 0
Query:  205 PINTQTIETSAAIVSTSAGIVFLGPLLGVLLGLITNYAAKADNEVGEAARGVGKTALEVFNYIAKVNSKYQIGAKVSDSASSLVAKLKENEGED-SVVSKLEETLETTKTKLTDLDEQYDLVTKAKSAVGLAVD 338
            PI  +T+E +A I+  +AG +  GP++G +     NYA+K D +V +  + V KT ++++NY A ++ KY+I  K  DS    + KLK  E  D   ++K+E+ L  TK+K+ +++++YDLV    +A+G+  D
Sbjct:   68 PIKEETVEFTAGILGGAAGFLVGGPVVGAITAAAANYASKMDGDVPDIVQAVSKTGIQIYNYFATLDEKYEILKKAQDSLQGTLDKLKAQETVDKEAIAKVEKALSNTKSKIEEINDEYDLVGGGLTALGVVGD 201          
BLAST of NO02G01690 vs. NCBI_GenBank
Match: XP_002289449.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92986.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 76.6 bits (187), Expect = 1.800e-10
Identity = 45/136 (33.09%), Postives = 78/136 (57.35%), Query Frame = 0
Query:  202 ALVPINTQTIETSAAIVSTSAGIVF-LGPLLGVLLGLITNYAAKAD--NEVGEAARGVGKTALEVFNYIAKVNSKYQIGAKVSDSASSLVAKLKENEGEDS-VVSKLEETLETTKTKLTDLDEQYDLVTKAKSAVG 334
            A++PIN  TIE +A ++  +A +V   GP+L ++     NY +K D   EV E  + + + +LE FN+ AK++SKY +  K+  S    + KLK + GE++  ++K+EE +  T  +++DL    D    +K  +G
Sbjct:  154 AIIPINEATIEFTAGVLGGTAALVLGGGPVLAIVAAAAANYVSKKDELGEVNELVQAISRASLETFNWFAKLDSKYSVLGKLQTSLDESIEKLKNSGGENAETIAKIEEAVAKTTKQISDLANDTDFFEGSKQVLG 289          
BLAST of NO02G01690 vs. NCBI_GenBank
Match: EJK50289.1 (hypothetical protein THAOC_30761 [Thalassiosira oceanica])

HSP 1 Score: 74.3 bits (181), Expect = 8.800e-10
Identity = 43/156 (27.56%), Postives = 90/156 (57.69%), Query Frame = 0
Query:  182 PKVSPAFSTSPPTGGENKGGALVPINTQTIETSAAIVSTSAGIVF-LGPLLGVLLGLITNYAAKADN--EVGEAARGVGKTALEVFNYIAKVNSKYQIGAKVSDSASSLVAKLKENEGEDS-VVSKLEETLETTKTKLTDLDEQYDLVTKAKSAVG 334
            PK + +F+       +   GA++P+N + +E ++ ++   A I     PL  V++    NY ++ ++  E+ E    +  ++L+  N+  K++ KY +  K+S++    V+ LK +EG+++  V K+E+T+++T ++L+ L E+ DLV  +K A+G
Sbjct:  120 PKAATSFNV------DASAGAIIPLNKENVEFTSGVLGGVAAIALGANPLFAVVVAAAANYISRKEDLGEISEIVNSISTSSLQTLNWFGKLDEKYTVLDKLSETLDQQVSSLKSSEGKNAETVGKIEQTIKSTSSQLSQLAEELDLVEGSKQALG 269          
The following BLAST results are available for this feature:
BLAST of NO02G01690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 9
Match NameE-valueIdentityDescription
EWM30517.13.500e-7580.51hypothetical protein Naga_100013g33 [Nannochlorops... [more]
GAX21705.12.200e-1633.78hypothetical protein FisN_3Hh497 [Fistulifera sola... [more]
OEU18599.12.800e-1634.18hypothetical protein FRACYDRAFT_268367 [Fragilario... [more]
GAX10296.12.800e-1634.46hypothetical protein FisN_3Lh497 [Fistulifera sola... [more]
CBJ33389.16.300e-1633.77conserved unknown protein [Ectocarpus siliculosus][more]
XP_002296715.11.400e-1535.06predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002176613.19.100e-1535.07predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002289449.11.800e-1033.09predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK50289.18.800e-1027.56hypothetical protein THAOC_30761 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR002ngnoR002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006791NSK006791Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01690.1NO02G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574015gene_752Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g33gene175Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01690.1NO02G01690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01690 ID=NO02G01690|Name=NO02G01690|organism=Nannochloropsis oceanica|type=gene|length=2503bp
CCTAGACGTGCAAGGCTCCTTTGTTCTGCTTCTTGTCAATGCTTGTAAGC
TTAAATCAGGTGGAGGAGAGAGAATGCCGTTGTTGAACAGTTGCGGGACT
CAAGGGTTTCGAGATTTGCAGCGCGTTATAGGGAGTCCAGCGTGGTTTGC
CCGCACTGCCGTGGGGCTGGCCGCGAACGGGAGGAAGAAGGAAAAAGGAT
GCTTCGCGTGCATGCATCATGCACGCTGCTCCTGCAGCTCCTCCTCCTCC
TCTTCCTCCGCCTCCTCCTCGTCGTGGTTGGAAGTCATTTCCTTAATTGT
GCCTGGCCTCTCTCGGATTTCCCACCATTTGTTGGTCTCTAACGGGTTGA
ATGCATTTATGAAGACACCAAGGCCGGAAGGCCAGCGTGCGAGTCTCGCG
CCTTGCAATGGCGGGAAGGCCTTGTGGTTGCTCACGCGACAAAATCTAAC
TCTTGGCTCCTCCTTTACATCCTCTCAGGCAACCGCCTCCCCTCCACCTT
TCACAATGGTCCGACAACTCTTCCTTTTGGCACTGTTACCAGCAGTCGCT
GTGGCCTTCATGGgtaagtacatcatctcttgcgaaagaaggaaggaagg
gagggagctgttggcaaggatgccctaagcggcgtgtgcccgcgataacg
attaatcccacgctcacatgcatgctcacccacacgacccactcgcgcct
gcttctcctccacctcttctcacgactcatctcagGCCCCGCCCGCATGC
CAAGGGGgtaagtacaactgtgggaatggatgccgtttgactcgtagcag
tggtcttagctgacgttcagcattatatgtgggaggcttcaatgcatcct
cctcattttttacatggagttttgcttacacccgtaactcctcaacgctt
aatctgccttatgtgcttttgtgcgaaccaaacctctgttttcctcagct
tcatcgcaacttcaccagcaacagccaagcaactcatcctctctctcctt
tttcccccttcttacctccagTGTACGAATGATGTCTGATGTGATGGACA
AGCCCAAGGTGAGCCCGGCCTTTTCTACTTCCCCCCCGACCGGTGGCGAG
AATAAGGGCGGGGCCTTGGTGCCTATCAACACGCAGACTATCGAGACGAG
CGCCGCGATCGTAAGCACCTCTGCGGGGATTGTTTTCCTGGGCCCGTTGT
TGGGTGTGCTTCTGGGCTTGATCACCAATTATGCAGCCAAGGCTGATAAT
GAGGTCGGGGAGGCTGCGCGTGGGGTGGGGAAGACGGCGTTGGAGGTGTT
CAATTACATTGCCAAGGTTAATAGCAAGTATCAAATTGGGGCTAAGGTCT
CGGACTCGGCCTCGTCGTTGGTGGCGAAGCTGAAGGAGAATGAGGGGGAA
GATTCGGTCGTATCGAAACTGGAGGAGACCCTTGAGACGACCAAGACGAA
GTTGACCGATTTAGATGAGCAGTACGATCTGGTGACCAAAGCGAAGAGTG
CAGTGGGCCTGGCGGTAGACTTCAGCAACACGGCTATTGACAAGGCATTG
GAGTTGAACGAGAAGTACGCCCTGGTTGACAAGACTACGGATGCGGTCAA
GAAGGCCGTGAACAAGGCAAAGGACTCGATTTAAATATCTGGCAGAGAGA
TGGGAGAGATGGGAGAGATGGGGGATGGATTGAGAAGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTTTGAACAGCAGTAGCACCAGTAGGACAACA
GGGGCTAAAGTGCCATATTTTTGGTCAGAGAGGGGCCGCTTCCTGTAATT
GTCGGGTCTCAGACCTAACCGTACGCTTCGTTCTTGTGTGCTCCTTCTGT
TGCACGTGCTCTGTCTGGAGTTACCAGCCCAGGCAGAGAGAGAGAAGATA
TGAGTGAGCGAAATTGAGGGGCTGGGGAAAAAGAGAGAGCCGCGCTCAGT
GCGGTAGTGTTTGTTGCTTGCCGTCCGTACGGGCGTCCGTCATTGCATTT
GAGATTAATTTATTTTTATCTCTGTTTGTTTTTCTGTTCCCCCTTCTGTC
ATATAATATATATATATACATATATATATTATAAGGCACCCTTTTTTTCC
CGACTTCTCTTTACCCCGAGTTGAATTTTCTTCTGTGTCGGGAGGACTCC
TTTTTTAAGGAGCTGAGTGTTTCCCTTCCTCCCTCGTCGTCTGTTACCAA
CTCCATCATCTCCATCGTTGCAGTCATTTGTATCGCCGTTCTTAGAAAAA
TAAGAGGTAAGAGATAGCAAGGTACAGCCTGTCTTTAATGTGGCAGCACA
GCGACTACGCACAGAAGGATATGAAAAGAAGAAGAAGGAGGACGGCGAAG
GAAGAAACTTGGAGGGCAGCAACACAGATCGGCAGTCAGAAAAATAGATT
TCACCAGAGAGAAAGGCGGTGATGAAAAACAGTAGCATTCGACCGATTAA
ACCAGTTTCCACGCCACATCATTCAAAGAAACAAAACAGATACCGAGAGA
TGA
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protein sequence of NO02G01690.1

>NO02G01690.1-protein ID=NO02G01690.1-protein|Name=NO02G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MPLLNSCGTQGFRDLQRVIGSPAWFARTAVGLAANGRKKEKGCFACMHHA
RCSCSSSSSSSSASSSSWLEVISLIVPGLSRISHHLLVSNGLNAFMKTPR
PEGQRASLAPCNGGKALWLLTRQNLTLGSSFTSSQATASPPPFTMVRQLF
LLALLPAVAVAFMGPARMPRGVRMMSDVMDKPKVSPAFSTSPPTGGENKG
GALVPINTQTIETSAAIVSTSAGIVFLGPLLGVLLGLITNYAAKADNEVG
EAARGVGKTALEVFNYIAKVNSKYQIGAKVSDSASSLVAKLKENEGEDSV
VSKLEETLETTKTKLTDLDEQYDLVTKAKSAVGLAVDFSNTAIDKALELN
EKYALVDKTTDAVKKAVNKAKDSI*
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Synonyms
Publications