NO02G01690.1, NO02G01690.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G01690.1
Unique Name	NO02G01690.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2067
Alignment location	chr2:497262..499764 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:497262..499764 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G01690.1 vs.
Match: EWM30517.1 (hypothetical protein Naga_100013g33 [Nannochloropsis gaditana])

HSP 1 Score: 346.7 bits (888), Expect = 9.200e-92
Identity = 187/229 (81.66%), Postives = 212/229 (92.58%), Query Frame = 0

Query:  147 RQLFLLALLPAVAVAFMGPARMPRG-VRMMSDVMDKPKVSPAFSTSPPTGGENKGGALVPINTQTIETSAAIVSTSAGIVFLGPLLGVLLGLITNYAAKADNEVGEAARGVGKTALEVFNYIAKVNSKYQIGAKVSDSASSLVAKLKENEGEDSVVSKLEETLETTKTKLTDLDEQYDLVTKAKSAVGLAVDFSNTAIDKALELNEKYALVDKTTDAVKKAVNKAKDSI 375
            RQLFLLALLPAVA++FMG  R+ RG VRMMSD+MDKPK+SPA ST PP GGE K  ALVP+N QTIETSAAIV TSAGIVFLGP+LG++LGL+TNYAAK DN+VGEAARGVGKTALEVFNYI K+NSKYQIG KVS+SASSLV+KLKEN+GEDSVV+KLEET E+TKTKL+DLD++YDLV+KAKSAVGL VDFSN+AIDKALELNEKY++VDKTTDAVKKAVNKAK+SI
Sbjct:    4 RQLFLLALLPAVALSFMGHPRVSRGSVRMMSDLMDKPKISPAVST-PPAGGEPKSTALVPVNPQTIETSAAIVGTSAGIVFLGPVLGIVLGLLTNYAAKTDNDVGEAARGVGKTALEVFNYIVKINSKYQIGTKVSNSASSLVSKLKENDGEDSVVAKLEETFESTKTKLSDLDQEYDLVSKAKSAVGLTVDFSNSAIDKALELNEKYSIVDKTTDAVKKAVNKAKESI 231

The following BLAST results are available for this feature:

BLAST of NO02G01690.1 vs.

BLAST of NO02G01690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30517.1	9.200e-92	81.66	hypothetical protein Naga_100013g33 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G01690	NO02G01690	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G01690.1	NO02G01690.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G01690.1.cds1	NO02G01690.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G01690.1.cds2	NO02G01690.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G01690.1.cds3	NO02G01690.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:497262..499764-
coding sequence from alignment at chr2:497262..499764-

mRNA sequence

>NO02G01690.1 ID=NO02G01690.1|Name=NO02G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2067bp
CCTAGACGTGCAAGGCTCCTTTGTTCTGCTTCTTGTCAATGCTTGTAAGC
TTAAATCAGGTGGAGGAGAGAGAATGCCGTTGTTGAACAGTTGCGGGACT
CAAGGGTTTCGAGATTTGCAGCGCGTTATAGGGAGTCCAGCGTGGTTTGC
CCGCACTGCCGTGGGGCTGGCCGCGAACGGGAGGAAGAAGGAAAAAGGAT
GCTTCGCGTGCATGCATCATGCACGCTGCTCCTGCAGCTCCTCCTCCTCC
TCTTCCTCCGCCTCCTCCTCGTCGTGGTTGGAAGTCATTTCCTTAATTGT
GCCTGGCCTCTCTCGGATTTCCCACCATTTGTTGGTCTCTAACGGGTTGA
ATGCATTTATGAAGACACCAAGGCCGGAAGGCCAGCGTGCGAGTCTCGCG
CCTTGCAATGGCGGGAAGGCCTTGTGGTTGCTCACGCGACAAAATCTAAC
TCTTGGCTCCTCCTTTACATCCTCTCAGGCAACCGCCTCCCCTCCACCTT
TCACAATGGTCCGACAACTCTTCCTTTTGGCACTGTTACCAGCAGTCGCT
GTGGCCTTCATGGGCCCCGCCCGCATGCCAAGGGGTGTACGAATGATGTC
TGATGTGATGGACAAGCCCAAGGTGAGCCCGGCCTTTTCTACTTCCCCCC
CGACCGGTGGCGAGAATAAGGGCGGGGCCTTGGTGCCTATCAACACGCAG
ACTATCGAGACGAGCGCCGCGATCGTAAGCACCTCTGCGGGGATTGTTTT
CCTGGGCCCGTTGTTGGGTGTGCTTCTGGGCTTGATCACCAATTATGCAG
CCAAGGCTGATAATGAGGTCGGGGAGGCTGCGCGTGGGGTGGGGAAGACG
GCGTTGGAGGTGTTCAATTACATTGCCAAGGTTAATAGCAAGTATCAAAT
TGGGGCTAAGGTCTCGGACTCGGCCTCGTCGTTGGTGGCGAAGCTGAAGG
AGAATGAGGGGGAAGATTCGGTCGTATCGAAACTGGAGGAGACCCTTGAG
ACGACCAAGACGAAGTTGACCGATTTAGATGAGCAGTACGATCTGGTGAC
CAAAGCGAAGAGTGCAGTGGGCCTGGCGGTAGACTTCAGCAACACGGCTA
TTGACAAGGCATTGGAGTTGAACGAGAAGTACGCCCTGGTTGACAAGACT
ACGGATGCGGTCAAGAAGGCCGTGAACAAGGCAAAGGACTCGATTTAAAT
ATCTGGCAGAGAGATGGGAGAGATGGGAGAGATGGGGGATGGATTGAGAA
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGAACAGCAGTAGCA
CCAGTAGGACAACAGGGGCTAAAGTGCCATATTTTTGGTCAGAGAGGGGC
CGCTTCCTGTAATTGTCGGGTCTCAGACCTAACCGTACGCTTCGTTCTTG
TGTGCTCCTTCTGTTGCACGTGCTCTGTCTGGAGTTACCAGCCCAGGCAG
AGAGAGAGAAGATATGAGTGAGCGAAATTGAGGGGCTGGGGAAAAAGAGA
GAGCCGCGCTCAGTGCGGTAGTGTTTGTTGCTTGCCGTCCGTACGGGCGT
CCGTCATTGCATTTGAGATTAATTTATTTTTATCTCTGTTTGTTTTTCTG
TTCCCCCTTCTGTCATATAATATATATATATACATATATATATTATAAGG
CACCCTTTTTTTCCCGACTTCTCTTTACCCCGAGTTGAATTTTCTTCTGT
GTCGGGAGGACTCCTTTTTTAAGGAGCTGAGTGTTTCCCTTCCTCCCTCG
TCGTCTGTTACCAACTCCATCATCTCCATCGTTGCAGTCATTTGTATCGC
CGTTCTTAGAAAAATAAGAGGTAAGAGATAGCAAGGTACAGCCTGTCTTT
AATGTGGCAGCACAGCGACTACGCACAGAAGGATATGAAAAGAAGAAGAA
GGAGGACGGCGAAGGAAGAAACTTGGAGGGCAGCAACACAGATCGGCAGT
CAGAAAAATAGATTTCACCAGAGAGAAAGGCGGTGATGAAAAACAGTAGC
ATTCGACCGATTAAACCAGTTTCCACGCCACATCATTCAAAGAAACAAAA
CAGATACCGAGAGATGA

protein sequence of NO02G01690.1

>NO02G01690.1-protein ID=NO02G01690.1-protein|Name=NO02G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MPLLNSCGTQGFRDLQRVIGSPAWFARTAVGLAANGRKKEKGCFACMHHA
RCSCSSSSSSSSASSSSWLEVISLIVPGLSRISHHLLVSNGLNAFMKTPR
PEGQRASLAPCNGGKALWLLTRQNLTLGSSFTSSQATASPPPFTMVRQLF
LLALLPAVAVAFMGPARMPRGVRMMSDVMDKPKVSPAFSTSPPTGGENKG
GALVPINTQTIETSAAIVSTSAGIVFLGPLLGVLLGLITNYAAKADNEVG
EAARGVGKTALEVFNYIAKVNSKYQIGAKVSDSASSLVAKLKENEGEDSV
VSKLEETLETTKTKLTDLDEQYDLVTKAKSAVGLAVDFSNTAIDKALELN
EKYALVDKTTDAVKKAVNKAKDSI*

mRNA from alignment at chr2:497262..499764-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G01690.1 ID=NO02G01690.1|Name=NO02G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2503bp|location=Sequence derived from alignment at chr2:497262..499764- (Nannochloropsis oceanica)
CCTAGACGTGCAAGGCTCCTTTGTTCTGCTTCTTGTCAATGCTTGTAAGC
TTAAATCAGGTGGAGGAGAGAGAATGCCGTTGTTGAACAGTTGCGGGACT
CAAGGGTTTCGAGATTTGCAGCGCGTTATAGGGAGTCCAGCGTGGTTTGC
CCGCACTGCCGTGGGGCTGGCCGCGAACGGGAGGAAGAAGGAAAAAGGAT
GCTTCGCGTGCATGCATCATGCACGCTGCTCCTGCAGCTCCTCCTCCTCC
TCTTCCTCCGCCTCCTCCTCGTCGTGGTTGGAAGTCATTTCCTTAATTGT
GCCTGGCCTCTCTCGGATTTCCCACCATTTGTTGGTCTCTAACGGGTTGA
ATGCATTTATGAAGACACCAAGGCCGGAAGGCCAGCGTGCGAGTCTCGCG
CCTTGCAATGGCGGGAAGGCCTTGTGGTTGCTCACGCGACAAAATCTAAC
TCTTGGCTCCTCCTTTACATCCTCTCAGGCAACCGCCTCCCCTCCACCTT
TCACAATGGTCCGACAACTCTTCCTTTTGGCACTGTTACCAGCAGTCGCT
GTGGCCTTCATGGGTAAGTACATCATCTCTTGCGAAAGAAGGAAGGAAGG
GAGGGAGCTGTTGGCAAGGATGCCCTAAGCGGCGTGTGCCCGCGATAACG
ATTAATCCCACGCTCACATGCATGCTCACCCACACGACCCACTCGCGCCT
GCTTCTCCTCCACCTCTTCTCACGACTCATCTCAGGCCCCGCCCGCATGC
CAAGGGGGTAAGTACAACTGTGGGAATGGATGCCGTTTGACTCGTAGCAG
TGGTCTTAGCTGACGTTCAGCATTATATGTGGGAGGCTTCAATGCATCCT
CCTCATTTTTTACATGGAGTTTTGCTTACACCCGTAACTCCTCAACGCTT
AATCTGCCTTATGTGCTTTTGTGCGAACCAAACCTCTGTTTTCCTCAGCT
TCATCGCAACTTCACCAGCAACAGCCAAGCAACTCATCCTCTCTCTCCTT
TTTCCCCCTTCTTACCTCCAGTGTACGAATGATGTCTGATGTGATGGACA
AGCCCAAGGTGAGCCCGGCCTTTTCTACTTCCCCCCCGACCGGTGGCGAG
AATAAGGGCGGGGCCTTGGTGCCTATCAACACGCAGACTATCGAGACGAG
CGCCGCGATCGTAAGCACCTCTGCGGGGATTGTTTTCCTGGGCCCGTTGT
TGGGTGTGCTTCTGGGCTTGATCACCAATTATGCAGCCAAGGCTGATAAT
GAGGTCGGGGAGGCTGCGCGTGGGGTGGGGAAGACGGCGTTGGAGGTGTT
CAATTACATTGCCAAGGTTAATAGCAAGTATCAAATTGGGGCTAAGGTCT
CGGACTCGGCCTCGTCGTTGGTGGCGAAGCTGAAGGAGAATGAGGGGGAA
GATTCGGTCGTATCGAAACTGGAGGAGACCCTTGAGACGACCAAGACGAA
GTTGACCGATTTAGATGAGCAGTACGATCTGGTGACCAAAGCGAAGAGTG
CAGTGGGCCTGGCGGTAGACTTCAGCAACACGGCTATTGACAAGGCATTG
GAGTTGAACGAGAAGTACGCCCTGGTTGACAAGACTACGGATGCGGTCAA
GAAGGCCGTGAACAAGGCAAAGGACTCGATTTAAATATCTGGCAGAGAGA
TGGGAGAGATGGGAGAGATGGGGGATGGATTGAGAAGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTTTGAACAGCAGTAGCACCAGTAGGACAACA
GGGGCTAAAGTGCCATATTTTTGGTCAGAGAGGGGCCGCTTCCTGTAATT
GTCGGGTCTCAGACCTAACCGTACGCTTCGTTCTTGTGTGCTCCTTCTGT
TGCACGTGCTCTGTCTGGAGTTACCAGCCCAGGCAGAGAGAGAGAAGATA
TGAGTGAGCGAAATTGAGGGGCTGGGGAAAAAGAGAGAGCCGCGCTCAGT
GCGGTAGTGTTTGTTGCTTGCCGTCCGTACGGGCGTCCGTCATTGCATTT
GAGATTAATTTATTTTTATCTCTGTTTGTTTTTCTGTTCCCCCTTCTGTC
ATATAATATATATATATACATATATATATTATAAGGCACCCTTTTTTTCC
CGACTTCTCTTTACCCCGAGTTGAATTTTCTTCTGTGTCGGGAGGACTCC
TTTTTTAAGGAGCTGAGTGTTTCCCTTCCTCCCTCGTCGTCTGTTACCAA
CTCCATCATCTCCATCGTTGCAGTCATTTGTATCGCCGTTCTTAGAAAAA
TAAGAGGTAAGAGATAGCAAGGTACAGCCTGTCTTTAATGTGGCAGCACA
GCGACTACGCACAGAAGGATATGAAAAGAAGAAGAAGGAGGACGGCGAAG
GAAGAAACTTGGAGGGCAGCAACACAGATCGGCAGTCAGAAAAATAGATT
TCACCAGAGAGAAAGGCGGTGATGAAAAACAGTAGCATTCGACCGATTAA
ACCAGTTTCCACGCCACATCATTCAAAGAAACAAAACAGATACCGAGAGA
TGA

Coding sequence (CDS) from alignment at chr2:497262..499764-

>NO02G01690.1 ID=NO02G01690.1|Name=NO02G01690.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr2:497262..499764- (Nannochloropsis oceanica)
ATGCCGTTGTTGAACAGTTGCGGGACTCAAGGGTTTCGAGATTTGCAGCG
CGTTATAGGGAGTCCAGCGTGGTTTGCCCGCACTGCCGTGGGGCTGGCCG
CGAACGGGAGGAAGAAGGAAAAAGGATGCTTCGCGTGCATGCATCATGCA
CGCTGCTCCTGCAGCTCCTCCTCCTCCTCTTCCTCCGCCTCCTCCTCGTC
GTGGTTGGAAGTCATTTCCTTAATTGTGCCTGGCCTCTCTCGGATTTCCC
ACCATTTGTTGGTCTCTAACGGGTTGAATGCATTTATGAAGACACCAAGG
CCGGAAGGCCAGCGTGCGAGTCTCGCGCCTTGCAATGGCGGGAAGGCCTT
GTGGTTGCTCACGCGACAAAATCTAACTCTTGGCTCCTCCTTTACATCCT
CTCAGGCAACCGCCTCCCCTCCACCTTTCACAATGGTCCGACAACTCTTC
CTTTTGGCACTGTTACCAGCAGTCGCTGTGGCCTTCATGGGCCCCGCCCG
CATGCCAAGGGGTGTACGAATGATGTCTGATGTGATGGACAAGCCCAAGG
TGAGCCCGGCCTTTTCTACTTCCCCCCCGACCGGTGGCGAGAATAAGGGC
GGGGCCTTGGTGCCTATCAACACGCAGACTATCGAGACGAGCGCCGCGAT
CGTAAGCACCTCTGCGGGGATTGTTTTCCTGGGCCCGTTGTTGGGTGTGC
TTCTGGGCTTGATCACCAATTATGCAGCCAAGGCTGATAATGAGGTCGGG
GAGGCTGCGCGTGGGGTGGGGAAGACGGCGTTGGAGGTGTTCAATTACAT
TGCCAAGGTTAATAGCAAGTATCAAATTGGGGCTAAGGTCTCGGACTCGG
CCTCGTCGTTGGTGGCGAAGCTGAAGGAGAATGAGGGGGAAGATTCGGTC
GTATCGAAACTGGAGGAGACCCTTGAGACGACCAAGACGAAGTTGACCGA
TTTAGATGAGCAGTACGATCTGGTGACCAAAGCGAAGAGTGCAGTGGGCC
TGGCGGTAGACTTCAGCAACACGGCTATTGACAAGGCATTGGAGTTGAAC
GAGAAGTACGCCCTGGTTGACAAGACTACGGATGCGGTCAAGAAGGCCGT
GAACAAGGCAAAGGACTCGATTTAA

Synonyms

Publications