NO02G01130, NO02G01130 (gene) Nannochloropsis oceanica

Overview
NameNO02G01130
Unique NameNO02G01130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2325
Alignment locationchr2:355562..357886 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:355562..357886 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G01130 vs. NCBI_GenBank
Match: EWM30482.1 (hypothetical protein Naga_100013g93 [Nannochloropsis gaditana])

HSP 1 Score: 406.0 bits (1042), Expect = 2.600e-109
Identity = 296/765 (38.69%), Postives = 373/765 (48.76%), Query Frame = 0 
Query:    1 MDLFAKLMPA-TTTGPEDKEPL-PVELIALQAEIKRLRADRATKEATEASLLAELQRRCNRVIALETELDISQSQARRLQEDCDKYKATQTRLLGVVALDREDDTGSSEGGNEDDAIIQFVVAIKARLATLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMLPSAVDLGLPEDVRLLLQRCPWTEAVLSNVLVTEELYEWEGWSLFHGWSGAAAHLSQSTPQLQDMVLRC-------RGXXXXXXXXXXYGRNDKTISDPNFSALVNPESVTLPRVGWEWLGGWRVDDSGGGTRGGINGRGQISEGRGGKAGTDVEGWSYGVDCEELIRGQGSASMLV-------------VSPDPQNVQXXXXXXXXXXXXXXXXXXXXXXXXXWVRVRVLSSVPGASDMVNAFLSLHARVATLETLSHKLSEQVLSLQGQVNERETQVARTLGLDRALVAMQARVHKAERTLGQYQQRMARQEGEAKLKAA-LEGGRECRDXXXXXXXXXGVKAVGEAVSKWFAGLGS------GERPVEEGKKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPLIKNALRWLSKGVLQHTPNADEGDPIEDWAGEVEAAVSTQGRSGGEKEVAEGFKREKASAGMRKEMEEAEAEAVPVERLSEAEMAALKKQLGEEKEGNE 737
            MD   KL+PA      E K  L P+EL ALQ E+++LR +R+ KEA+E SLL ELQRRCNRVI LET+LD ++ QARRLQ +CD ++A Q +L+ ++   R   + +S    ++  +++ VVA+KA +A LE                                                  +  PSA DLGLPEDV +LLQRCPWTEAVL N+LVTEELYEWE WSLFHGWSGAAAHLSQ+TP  +DMVL+C                   Y R DKTI+D   + LVNP++V LP VGWEWLGGWR +D   G  GG         G       D EGWSYG  CEEL+RG GS SML+             V+ +  ++Q                         WVRVRVL+ VPGASDMVN FL L ARVA+LE ++ KLSEQVLSLQG +N+RE Q AR+  L+RALVAMQ R+ KAER+LG+ +Q++A +E +A++++   EG +E ++         G++AVGEAVS+WFAGLGS      G    E GK E                                                                                                         PLIKNA RW SK VLQH   A   DPIE WA             GGE     G +R +         EE E E VP+E LSE E+A L+KQL + +E  E
Sbjct:    1 MDKLTKLIPAKPDNDDEGKSSLPPLELTALQEEVQQLRIERSRKEASETSLLGELQRRCNRVIELETQLDDTRGQARRLQLECDAHRANQKQLMSLL---RATSSHTSTDIIDECPVVESVVALKAHIAALE--QGRWDGKRLAAQQEEEVGSLRTQMEELKRVLVAAENKAGHTAAGEDHKEGAPSARDLGLPEDVHVLLQRCPWTEAVLGNILVTEELYEWEAWSLFHGWSGAAAHLSQATPDFRDMVLQCTDPPKASTSHSDGDGPRPAYRRQDKTITDVGCTTLVNPDAVVLPAVGWEWLGGWRPED---GKEGG--------SGAKALGAMDQEGWSYGTSCEELVRGHGSESMLIPVAGPGARPGQGGVAEEAGSIQ-GSGSNTAASPTKPAPQKRRIRRRRWVRVRVLAHVPGASDMVNGFLGLRARVASLEAVARKLSEQVLSLQGALNDREVQAARSDALERALVAMQGRLQKAERSLGRCRQQLAGREEDARVQSRDKEGHKEGQE-------GGGLRAVGEAVSEWFAGLGSESIQGQGLSRDEGGKDE------------------PVGGGEGREESGGLKKWLFDVKSSLGRGNGVDAAACFETEGHGTQEDAHLTPAVAQGTSRTGVHAGNSTEGRGDKPVHNGDADGGATPLIKNAFRWFSKEVLQH---ASGEDPIESWA-----------EDGGE----TGLERVEHRVNQGGNGEEREDENVPIEHLSETEIAKLRKQLYDNEEKKE 705
The following BLAST results are available for this feature:
BLAST of NO02G01130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30482.12.600e-10938.69hypothetical protein Naga_100013g93 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006727NSK006727Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01130.1NO02G01130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667712gene_696Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100013g93gene125Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01130.1NO02G01130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01130 ID=NO02G01130|Name=NO02G01130|organism=Nannochloropsis oceanica|type=gene|length=2325bp
ATGGACCTATTTGCCAAGCTTATGCCGGCCACCACAACGGGCCCTGAAGA
CAAGGAACCCCTCCCTGTAGAATTGATAGCACTGCAGGCTGAAATCAAGC
GCCTGCGCGCGGACAGAGCAACGAAAGAAGCGACAGAGGCCTCCCTCTTG
GCCGAGTTGCAGAGACGATGCAACCGCGTAATTGCCCTGGAAACGGAGCT
CGACATTTCCCAAAGCCAAGCCCGGCGGCTTCAGGAAGATTGCGACAAGT
ACAAGGCGACACAGACTCGGCTTCTGGGCGTTGTGGCGCTTGATAGAGAA
GATGATACCGGTAGCTCTGAAGGCGGCAATGAAGACGACGCCATCATACA
ATTTGTTGTGGCAATCAAAGCCCGCCTGGCCACACTGGAGCAAGAGCGAC
GGGATGGTAAGCGTGTAGCGGCACAGCAAGAAGAGGAGCTCGACTCCTTG
CGCAAGCAAGTAGAAGAGCTGAAACGTGTCGTAGTCTCCTCGGCAGATTC
CAGCAGCAGCAGCAGCAGCGTCCAAAAACAACAAAAACAAGACATGTTAC
CCTCCGCCGTCGATCTCGGCCTTCCAGAAGATGTTCGTCTATTGCTGCAG
CGATGTCCCTGGACAGAGGCCGTGTTGAGTAATGTCTTGGTGACAGAGGA
GCTGTACGAATGGGAGGGATGGTCCCTTTTCCACGGCTGGAGCGGCGCCG
CTGCTCACCTCTCCCAGTCAACTCCGCAGTTGCAGGACATGGTTTTGCGA
TGTAGAGGTGGTAGCAGCAGCAGCAGTAGCAGCAGCGCATATGGGCGGAA
CGATAAGACCATATCGGACCCCAATTTCTCCGCGTTGGTGAACCCTGAAT
CAGTGACCCTTCCCCGAGTAGGGTGGGAGTGGCTAGGGGGTTGGCGGGTG
GATGATAGTGGTGGTGGTACTCGAGGAGGGATAAATGGACGAGGACAAAT
AAGCGAGGGAAGAGGGGGGAAAGCGGGGACAGATGTGGAGGGGTGGAGTT
ATGGCGTGGACTGTGAGGAGCTGATCCGAGGGCAAGGGTCGGCTAGCATG
CTGGTCGTGTCCCCGGACCCTCAGAATGTGCAGGAAGGAAGCAGCAGCAG
CAGTACCACCACCACACCGGCCACTGTGCAAAAGAAACGTCGTGTCCGTC
GTCGGCGCTGGGTAAGGGTGCGTGTCCTGTCCTCTGTCCCTGGTGCCTCG
GACATGGTTAATGCCTTCCTCTCGCTCCATGCGCGCGTCGCCACCCTCGA
GACACTCTCACACAAGCTCTCTGAGCAGGTCTTGTCGTTACAAGGCCAAG
TAAACGAGCGTGAAACACAGGTAGCGCGTACATTGGGCTTAGACCGAGCT
CTCGTCGCGATGCAAGCACGAGTACACAAGGCTGAGCGTACTCTGGGACA
ATACCAGCAGCGCATGGCCCGGCAGGAAGGGGAGGCGAAGTTGAAGGCAG
CGTTGGAGGGCGGGAGGGAATGTAGGGATGGAGGGAAGGAGGACGAGGAA
GGAGGGGGGGTGAAAGCTGTGGGTGAGGCTGTATCTAAATGGTTTGCGGG
GCTGGGGAGTGGTGAGAGACCGGTGGAGGAAGGGAAGAAGGAGGGAGAGG
GAAAGATGGAGAGAGAGGAGGAGGAGGAGGGCGGAGGTTTAAAGAAGTGG
ATCTCGGAGGTTAAATTGAGCTTGAGTAGCACCAGCGCTGGTAGCAGCAG
TGTCGCTGTGCCGGCTGAAGGAGAGGGTGTTGCCAAGGGGGCGCCCTCGT
CCTCGTCCATCCCCGTAGGCACTTCCGATGGTAATGGGAGCAGCAGCAGC
AACAGCGGCAATGCCAGTGACATGGACCGGGGCAGGATCAATACCAGCAG
AGGCAGCAACAGTAGCAGAAGCAGTAGCAGCAGTAGTGGGGATGGGATTG
GTGGTGCGCCGTTGATCAAGAATGCCTTACGGTGGCTTTCCAAGGGGGTG
TTGCAACATACTCCGAACGCGGATGAGGGCGACCCTATCGAAGATTGGGC
GGGTGAGGTGGAAGCGGCAGTTTCAACTCAGGGGAGATCAGGTGGGGAAA
AGGAAGTAGCCGAGGGCTTCAAGCGTGAGAAGGCCTCTGCGGGTATGAGA
AAGGAAATGGAGGAGGCAGAAGCTGAAGCGGTTCCTGTGGAGCGGCTGAG
CGAAGCGGAGATGGCAGCATTGAAAAAACAATTGGGTGAGGAGAAAGAGG
GAAATGAGGGTGAGAGCTGCGAGGATGAGAAGGAAACAAGCGAAGGAGAA
ACGGGCGGCATCCTTTCCAACGCAAGCAGTAGTGGTGAGAGGAACAAGGA
TCAACCCAAGGAGCAGCAAGAGTAG
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protein sequence of NO02G01130.1

>NO02G01130.1-protein ID=NO02G01130.1-protein|Name=NO02G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=775bp
MDLFAKLMPATTTGPEDKEPLPVELIALQAEIKRLRADRATKEATEASLL
AELQRRCNRVIALETELDISQSQARRLQEDCDKYKATQTRLLGVVALDRE
DDTGSSEGGNEDDAIIQFVVAIKARLATLEQERRDGKRVAAQQEEELDSL
RKQVEELKRVVVSSADSSSSSSSVQKQQKQDMLPSAVDLGLPEDVRLLLQ
RCPWTEAVLSNVLVTEELYEWEGWSLFHGWSGAAAHLSQSTPQLQDMVLR
CRGGSSSSSSSSAYGRNDKTISDPNFSALVNPESVTLPRVGWEWLGGWRV
DDSGGGTRGGINGRGQISEGRGGKAGTDVEGWSYGVDCEELIRGQGSASM
LVVSPDPQNVQEGSSSSSTTTTPATVQKKRRVRRRRWVRVRVLSSVPGAS
DMVNAFLSLHARVATLETLSHKLSEQVLSLQGQVNERETQVARTLGLDRA
LVAMQARVHKAERTLGQYQQRMARQEGEAKLKAALEGGRECRDGGKEDEE
GGGVKAVGEAVSKWFAGLGSGERPVEEGKKEGEGKMEREEEEEGGGLKKW
ISEVKLSLSSTSAGSSSVAVPAEGEGVAKGAPSSSSIPVGTSDGNGSSSS
NSGNASDMDRGRINTSRGSNSSRSSSSSSGDGIGGAPLIKNALRWLSKGV
LQHTPNADEGDPIEDWAGEVEAAVSTQGRSGGEKEVAEGFKREKASAGMR
KEMEEAEAEAVPVERLSEAEMAALKKQLGEEKEGNEGESCEDEKETSEGE
TGGILSNASSSGERNKDQPKEQQE*
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Synonyms
Publications