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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:355562..357886 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01130.1 vs.
Match: EWM30482.1 (hypothetical protein Naga_100013g93 [Nannochloropsis gaditana]) HSP 1 Score: 542.3 bits (1396), Expect = 2.400e-150 Identity = 369/774 (47.67%), Postives = 490/774 (63.31%), Query Frame = 0
Query: 1 MDLFAKLMPATTTGPED-KEPLP-VELIALQAEIKRLRADRATKEATEASLLAELQRRCNRVIALETELDISQSQARRLQEDCDKYKATQTRLLGVVALDREDDTGSSEGGNEDDAIIQFVVAIKARLATLEQERRDGKRVAAQQEEELDSLRKQVEELKRVVVSSADSSSSSSSVQKQQKQDMLPSAVDLGLPEDVRLLLQRCPWTEAVLSNVLVTEELYEWEGWSLFHGWSGAAAHLSQSTPQLQDMVLRCRGGSSSSSSSS-------AYGRNDKTISDPNFSALVNPESVTLPRVGWEWLGGWRVDDSGGGTRGGINGRGQISEGRGGKA--GTDVEGWSYGVDCEELIRGQGSASMLV-------------VSPDPQNVQ-EGSSSSSTTTTPATVQKKRRVRRRRWVRVRVLSSVPGASDMVNAFLSLHARVATLETLSHKLSEQVLSLQGQVNERETQVARTLGLDRALVAMQARVHKAERTLGQYQQRMARQEGEAKLKAALEGGRECRDGGKEDEEGGGVKAVGEAVSKWFAGLGSGERPVEEGKKEGEGKMER-----EEEEEGGGLKKWISEVKLSLSSTSAGSSSVAVPAEGEGVAKGAPSSSSIPVGTSDGNGSSSSNSGNASDMDRGRINTSRGSNSSRSSSSSSGDGIGGA-PLIKNALRWLSKGVLQHTPNADEGDPIEDWAGEVEAAVSTQGRSGGEKEVAEGFKREKASAGMRKEMEEAEAEAVPVERLSEAEMAALKKQLGEEKEGNE-GESCED 743
MD KL+PA ++ K LP +EL ALQ E+++LR +R+ KEA+E SLL ELQRRCNRVI LET+LD ++ QARRLQ +CD ++A Q +L+ ++ R + +S ++ +++ VVA+KA +A LEQ R DGKR+AAQQEEE+ SLR Q+EELKRV+V++ + + +++ + ++ PSA DLGLPEDV +LLQRCPWTEAVL N+LVTEELYEWE WSLFHGWSGAAAHLSQ+TP +DMVL+C +S+S S AY R DKTI+D + LVNP++V LP VGWEWLGGWR +D G G G KA D EGWSYG CEEL+RG GS SML+ V+ + ++Q GS+++++ T PA +KRR+RRRRWVRVRVL+ VPGASDMVN FL L ARVA+LE ++ KLSEQVLSLQG +N+RE Q AR+ L+RALVAMQ R+ KAER+LG+ +Q++A +E +A++++ ++G KE +EGGG++AVGEAVS+WFAGLGS E +G EG + E EE GGLKKW+ +VK SL + ++ EG G + A + ++ GTS + ++GN+++ RG +GD GGA PLIKNA RW SK VLQH A DPIE WA GGE G +R + EE E E VP+E LSE E+A L+KQL + +E E G++ D
Sbjct: 1 MDKLTKLIPAKPDNDDEGKSSLPPLELTALQEEVQQLRIERSRKEASETSLLGELQRRCNRVIELETQLDDTRGQARRLQLECDAHRANQKQLMSLL---RATSSHTSTDIIDECPVVESVVALKAHIAALEQGRWDGKRLAAQQEEEVGSLRTQMEELKRVLVAAENKAGHTAA--GEDHKEGAPSARDLGLPEDVHVLLQRCPWTEAVLGNILVTEELYEWEAWSLFHGWSGAAAHLSQATPDFRDMVLQCTDPPKASTSHSDGDGPRPAYRRQDKTITDVGCTTLVNPDAVVLPAVGWEWLGGWRPEDGKEG-------------GSGAKALGAMDQEGWSYGTSCEELVRGHGSESMLIPVAGPGARPGQGGVAEEAGSIQGSGSNTAASPTKPAP--QKRRIRRRRWVRVRVLAHVPGASDMVNGFLGLRARVASLEAVARKLSEQVLSLQGALNDREVQAARSDALERALVAMQGRLQKAERSLGRCRQQLAGREEDARVQS------RDKEGHKEGQEGGGLRAVGEAVSEWFAGLGS-ESIQGQGLSRDEGGKDEPVGGGEGREESGGLKKWLFDVKSSLGRGNGVDAAACFETEGHGTQEDAHLTPAVAQGTS----RTGVHAGNSTE--------GRGDKPVH-----NGDADGGATPLIKNAFRWFSKEVLQH---ASGEDPIESWA-----------EDGGE----TGLERVEHRVNQGGNGEEREDENVPIEHLSETEIAKLRKQLYDNEEKKEAGKTARD 712
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01130.1 ID=NO02G01130.1|Name=NO02G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2325bp ATGGACCTATTTGCCAAGCTTATGCCGGCCACCACAACGGGCCCTGAAGA CAAGGAACCCCTCCCTGTAGAATTGATAGCACTGCAGGCTGAAATCAAGC GCCTGCGCGCGGACAGAGCAACGAAAGAAGCGACAGAGGCCTCCCTCTTG GCCGAGTTGCAGAGACGATGCAACCGCGTAATTGCCCTGGAAACGGAGCT CGACATTTCCCAAAGCCAAGCCCGGCGGCTTCAGGAAGATTGCGACAAGT ACAAGGCGACACAGACTCGGCTTCTGGGCGTTGTGGCGCTTGATAGAGAA GATGATACCGGTAGCTCTGAAGGCGGCAATGAAGACGACGCCATCATACA ATTTGTTGTGGCAATCAAAGCCCGCCTGGCCACACTGGAGCAAGAGCGAC GGGATGGTAAGCGTGTAGCGGCACAGCAAGAAGAGGAGCTCGACTCCTTG CGCAAGCAAGTAGAAGAGCTGAAACGTGTCGTAGTCTCCTCGGCAGATTC CAGCAGCAGCAGCAGCAGCGTCCAAAAACAACAAAAACAAGACATGTTAC CCTCCGCCGTCGATCTCGGCCTTCCAGAAGATGTTCGTCTATTGCTGCAG CGATGTCCCTGGACAGAGGCCGTGTTGAGTAATGTCTTGGTGACAGAGGA GCTGTACGAATGGGAGGGATGGTCCCTTTTCCACGGCTGGAGCGGCGCCG CTGCTCACCTCTCCCAGTCAACTCCGCAGTTGCAGGACATGGTTTTGCGA TGTAGAGGTGGTAGCAGCAGCAGCAGTAGCAGCAGCGCATATGGGCGGAA CGATAAGACCATATCGGACCCCAATTTCTCCGCGTTGGTGAACCCTGAAT CAGTGACCCTTCCCCGAGTAGGGTGGGAGTGGCTAGGGGGTTGGCGGGTG GATGATAGTGGTGGTGGTACTCGAGGAGGGATAAATGGACGAGGACAAAT AAGCGAGGGAAGAGGGGGGAAAGCGGGGACAGATGTGGAGGGGTGGAGTT ATGGCGTGGACTGTGAGGAGCTGATCCGAGGGCAAGGGTCGGCTAGCATG CTGGTCGTGTCCCCGGACCCTCAGAATGTGCAGGAAGGAAGCAGCAGCAG CAGTACCACCACCACACCGGCCACTGTGCAAAAGAAACGTCGTGTCCGTC GTCGGCGCTGGGTAAGGGTGCGTGTCCTGTCCTCTGTCCCTGGTGCCTCG GACATGGTTAATGCCTTCCTCTCGCTCCATGCGCGCGTCGCCACCCTCGA GACACTCTCACACAAGCTCTCTGAGCAGGTCTTGTCGTTACAAGGCCAAG TAAACGAGCGTGAAACACAGGTAGCGCGTACATTGGGCTTAGACCGAGCT CTCGTCGCGATGCAAGCACGAGTACACAAGGCTGAGCGTACTCTGGGACA ATACCAGCAGCGCATGGCCCGGCAGGAAGGGGAGGCGAAGTTGAAGGCAG CGTTGGAGGGCGGGAGGGAATGTAGGGATGGAGGGAAGGAGGACGAGGAA GGAGGGGGGGTGAAAGCTGTGGGTGAGGCTGTATCTAAATGGTTTGCGGG GCTGGGGAGTGGTGAGAGACCGGTGGAGGAAGGGAAGAAGGAGGGAGAGG GAAAGATGGAGAGAGAGGAGGAGGAGGAGGGCGGAGGTTTAAAGAAGTGG ATCTCGGAGGTTAAATTGAGCTTGAGTAGCACCAGCGCTGGTAGCAGCAG TGTCGCTGTGCCGGCTGAAGGAGAGGGTGTTGCCAAGGGGGCGCCCTCGT CCTCGTCCATCCCCGTAGGCACTTCCGATGGTAATGGGAGCAGCAGCAGC AACAGCGGCAATGCCAGTGACATGGACCGGGGCAGGATCAATACCAGCAG AGGCAGCAACAGTAGCAGAAGCAGTAGCAGCAGTAGTGGGGATGGGATTG GTGGTGCGCCGTTGATCAAGAATGCCTTACGGTGGCTTTCCAAGGGGGTG TTGCAACATACTCCGAACGCGGATGAGGGCGACCCTATCGAAGATTGGGC GGGTGAGGTGGAAGCGGCAGTTTCAACTCAGGGGAGATCAGGTGGGGAAA AGGAAGTAGCCGAGGGCTTCAAGCGTGAGAAGGCCTCTGCGGGTATGAGA AAGGAAATGGAGGAGGCAGAAGCTGAAGCGGTTCCTGTGGAGCGGCTGAG CGAAGCGGAGATGGCAGCATTGAAAAAACAATTGGGTGAGGAGAAAGAGG GAAATGAGGGTGAGAGCTGCGAGGATGAGAAGGAAACAAGCGAAGGAGAA ACGGGCGGCATCCTTTCCAACGCAAGCAGTAGTGGTGAGAGGAACAAGGA TCAACCCAAGGAGCAGCAAGAGTAG back to topprotein sequence of NO02G01130.1 >NO02G01130.1-protein ID=NO02G01130.1-protein|Name=NO02G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=775bp MDLFAKLMPATTTGPEDKEPLPVELIALQAEIKRLRADRATKEATEASLL AELQRRCNRVIALETELDISQSQARRLQEDCDKYKATQTRLLGVVALDRE DDTGSSEGGNEDDAIIQFVVAIKARLATLEQERRDGKRVAAQQEEELDSL RKQVEELKRVVVSSADSSSSSSSVQKQQKQDMLPSAVDLGLPEDVRLLLQ RCPWTEAVLSNVLVTEELYEWEGWSLFHGWSGAAAHLSQSTPQLQDMVLR CRGGSSSSSSSSAYGRNDKTISDPNFSALVNPESVTLPRVGWEWLGGWRV DDSGGGTRGGINGRGQISEGRGGKAGTDVEGWSYGVDCEELIRGQGSASM LVVSPDPQNVQEGSSSSSTTTTPATVQKKRRVRRRRWVRVRVLSSVPGAS DMVNAFLSLHARVATLETLSHKLSEQVLSLQGQVNERETQVARTLGLDRA LVAMQARVHKAERTLGQYQQRMARQEGEAKLKAALEGGRECRDGGKEDEE GGGVKAVGEAVSKWFAGLGSGERPVEEGKKEGEGKMEREEEEEGGGLKKW ISEVKLSLSSTSAGSSSVAVPAEGEGVAKGAPSSSSIPVGTSDGNGSSSS NSGNASDMDRGRINTSRGSNSSRSSSSSSGDGIGGAPLIKNALRWLSKGV LQHTPNADEGDPIEDWAGEVEAAVSTQGRSGGEKEVAEGFKREKASAGMR KEMEEAEAEAVPVERLSEAEMAALKKQLGEEKEGNEGESCEDEKETSEGE TGGILSNASSSGERNKDQPKEQQE* back to topmRNA from alignment at chr2:355562..357886- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01130.1 ID=NO02G01130.1|Name=NO02G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2325bp|location=Sequence derived from alignment at chr2:355562..357886- (Nannochloropsis oceanica) ATGGACCTATTTGCCAAGCTTATGCCGGCCACCACAACGGGCCCTGAAGA
CAAGGAACCCCTCCCTGTAGAATTGATAGCACTGCAGGCTGAAATCAAGC
GCCTGCGCGCGGACAGAGCAACGAAAGAAGCGACAGAGGCCTCCCTCTTG
GCCGAGTTGCAGAGACGATGCAACCGCGTAATTGCCCTGGAAACGGAGCT
CGACATTTCCCAAAGCCAAGCCCGGCGGCTTCAGGAAGATTGCGACAAGT
ACAAGGCGACACAGACTCGGCTTCTGGGCGTTGTGGCGCTTGATAGAGAA
GATGATACCGGTAGCTCTGAAGGCGGCAATGAAGACGACGCCATCATACA
ATTTGTTGTGGCAATCAAAGCCCGCCTGGCCACACTGGAGCAAGAGCGAC
GGGATGGTAAGCGTGTAGCGGCACAGCAAGAAGAGGAGCTCGACTCCTTG
CGCAAGCAAGTAGAAGAGCTGAAACGTGTCGTAGTCTCCTCGGCAGATTC
CAGCAGCAGCAGCAGCAGCGTCCAAAAACAACAAAAACAAGACATGTTAC
CCTCCGCCGTCGATCTCGGCCTTCCAGAAGATGTTCGTCTATTGCTGCAG
CGATGTCCCTGGACAGAGGCCGTGTTGAGTAATGTCTTGGTGACAGAGGA
GCTGTACGAATGGGAGGGATGGTCCCTTTTCCACGGCTGGAGCGGCGCCG
CTGCTCACCTCTCCCAGTCAACTCCGCAGTTGCAGGACATGGTTTTGCGA
TGTAGAGGTGGTAGCAGCAGCAGCAGTAGCAGCAGCGCATATGGGCGGAA
CGATAAGACCATATCGGACCCCAATTTCTCCGCGTTGGTGAACCCTGAAT
CAGTGACCCTTCCCCGAGTAGGGTGGGAGTGGCTAGGGGGTTGGCGGGTG
GATGATAGTGGTGGTGGTACTCGAGGAGGGATAAATGGACGAGGACAAAT
AAGCGAGGGAAGAGGGGGGAAAGCGGGGACAGATGTGGAGGGGTGGAGTT
ATGGCGTGGACTGTGAGGAGCTGATCCGAGGGCAAGGGTCGGCTAGCATG
CTGGTCGTGTCCCCGGACCCTCAGAATGTGCAGGAAGGAAGCAGCAGCAG
CAGTACCACCACCACACCGGCCACTGTGCAAAAGAAACGTCGTGTCCGTC
GTCGGCGCTGGGTAAGGGTGCGTGTCCTGTCCTCTGTCCCTGGTGCCTCG
GACATGGTTAATGCCTTCCTCTCGCTCCATGCGCGCGTCGCCACCCTCGA
GACACTCTCACACAAGCTCTCTGAGCAGGTCTTGTCGTTACAAGGCCAAG
TAAACGAGCGTGAAACACAGGTAGCGCGTACATTGGGCTTAGACCGAGCT
CTCGTCGCGATGCAAGCACGAGTACACAAGGCTGAGCGTACTCTGGGACA
ATACCAGCAGCGCATGGCCCGGCAGGAAGGGGAGGCGAAGTTGAAGGCAG
CGTTGGAGGGCGGGAGGGAATGTAGGGATGGAGGGAAGGAGGACGAGGAA
GGAGGGGGGGTGAAAGCTGTGGGTGAGGCTGTATCTAAATGGTTTGCGGG
GCTGGGGAGTGGTGAGAGACCGGTGGAGGAAGGGAAGAAGGAGGGAGAGG
GAAAGATGGAGAGAGAGGAGGAGGAGGAGGGCGGAGGTTTAAAGAAGTGG
ATCTCGGAGGTTAAATTGAGCTTGAGTAGCACCAGCGCTGGTAGCAGCAG
TGTCGCTGTGCCGGCTGAAGGAGAGGGTGTTGCCAAGGGGGCGCCCTCGT
CCTCGTCCATCCCCGTAGGCACTTCCGATGGTAATGGGAGCAGCAGCAGC
AACAGCGGCAATGCCAGTGACATGGACCGGGGCAGGATCAATACCAGCAG
AGGCAGCAACAGTAGCAGAAGCAGTAGCAGCAGTAGTGGGGATGGGATTG
GTGGTGCGCCGTTGATCAAGAATGCCTTACGGTGGCTTTCCAAGGGGGTG
TTGCAACATACTCCGAACGCGGATGAGGGCGACCCTATCGAAGATTGGGC
GGGTGAGGTGGAAGCGGCAGTTTCAACTCAGGGGAGATCAGGTGGGGAAA
AGGAAGTAGCCGAGGGCTTCAAGCGTGAGAAGGCCTCTGCGGGTATGAGA
AAGGAAATGGAGGAGGCAGAAGCTGAAGCGGTTCCTGTGGAGCGGCTGAG
CGAAGCGGAGATGGCAGCATTGAAAAAACAATTGGGTGAGGAGAAAGAGG
GAAATGAGGGTGAGAGCTGCGAGGATGAGAAGGAAACAAGCGAAGGAGAA
ACGGGCGGCATCCTTTCCAACGCAAGCAGTAGTGGTGAGAGGAACAAGGA
TCAACCCAAGGAGCAGCAAGAGTAG back to topCoding sequence (CDS) from alignment at chr2:355562..357886- >NO02G01130.1 ID=NO02G01130.1|Name=NO02G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=2325bp|location=Sequence derived from alignment at chr2:355562..357886- (Nannochloropsis oceanica) ATGGACCTATTTGCCAAGCTTATGCCGGCCACCACAACGGGCCCTGAAGA CAAGGAACCCCTCCCTGTAGAATTGATAGCACTGCAGGCTGAAATCAAGC GCCTGCGCGCGGACAGAGCAACGAAAGAAGCGACAGAGGCCTCCCTCTTG GCCGAGTTGCAGAGACGATGCAACCGCGTAATTGCCCTGGAAACGGAGCT CGACATTTCCCAAAGCCAAGCCCGGCGGCTTCAGGAAGATTGCGACAAGT ACAAGGCGACACAGACTCGGCTTCTGGGCGTTGTGGCGCTTGATAGAGAA GATGATACCGGTAGCTCTGAAGGCGGCAATGAAGACGACGCCATCATACA ATTTGTTGTGGCAATCAAAGCCCGCCTGGCCACACTGGAGCAAGAGCGAC GGGATGGTAAGCGTGTAGCGGCACAGCAAGAAGAGGAGCTCGACTCCTTG CGCAAGCAAGTAGAAGAGCTGAAACGTGTCGTAGTCTCCTCGGCAGATTC CAGCAGCAGCAGCAGCAGCGTCCAAAAACAACAAAAACAAGACATGTTAC CCTCCGCCGTCGATCTCGGCCTTCCAGAAGATGTTCGTCTATTGCTGCAG CGATGTCCCTGGACAGAGGCCGTGTTGAGTAATGTCTTGGTGACAGAGGA GCTGTACGAATGGGAGGGATGGTCCCTTTTCCACGGCTGGAGCGGCGCCG CTGCTCACCTCTCCCAGTCAACTCCGCAGTTGCAGGACATGGTTTTGCGA TGTAGAGGTGGTAGCAGCAGCAGCAGTAGCAGCAGCGCATATGGGCGGAA CGATAAGACCATATCGGACCCCAATTTCTCCGCGTTGGTGAACCCTGAAT CAGTGACCCTTCCCCGAGTAGGGTGGGAGTGGCTAGGGGGTTGGCGGGTG GATGATAGTGGTGGTGGTACTCGAGGAGGGATAAATGGACGAGGACAAAT AAGCGAGGGAAGAGGGGGGAAAGCGGGGACAGATGTGGAGGGGTGGAGTT ATGGCGTGGACTGTGAGGAGCTGATCCGAGGGCAAGGGTCGGCTAGCATG CTGGTCGTGTCCCCGGACCCTCAGAATGTGCAGGAAGGAAGCAGCAGCAG CAGTACCACCACCACACCGGCCACTGTGCAAAAGAAACGTCGTGTCCGTC GTCGGCGCTGGGTAAGGGTGCGTGTCCTGTCCTCTGTCCCTGGTGCCTCG GACATGGTTAATGCCTTCCTCTCGCTCCATGCGCGCGTCGCCACCCTCGA GACACTCTCACACAAGCTCTCTGAGCAGGTCTTGTCGTTACAAGGCCAAG TAAACGAGCGTGAAACACAGGTAGCGCGTACATTGGGCTTAGACCGAGCT CTCGTCGCGATGCAAGCACGAGTACACAAGGCTGAGCGTACTCTGGGACA ATACCAGCAGCGCATGGCCCGGCAGGAAGGGGAGGCGAAGTTGAAGGCAG CGTTGGAGGGCGGGAGGGAATGTAGGGATGGAGGGAAGGAGGACGAGGAA GGAGGGGGGGTGAAAGCTGTGGGTGAGGCTGTATCTAAATGGTTTGCGGG GCTGGGGAGTGGTGAGAGACCGGTGGAGGAAGGGAAGAAGGAGGGAGAGG GAAAGATGGAGAGAGAGGAGGAGGAGGAGGGCGGAGGTTTAAAGAAGTGG ATCTCGGAGGTTAAATTGAGCTTGAGTAGCACCAGCGCTGGTAGCAGCAG TGTCGCTGTGCCGGCTGAAGGAGAGGGTGTTGCCAAGGGGGCGCCCTCGT CCTCGTCCATCCCCGTAGGCACTTCCGATGGTAATGGGAGCAGCAGCAGC AACAGCGGCAATGCCAGTGACATGGACCGGGGCAGGATCAATACCAGCAG AGGCAGCAACAGTAGCAGAAGCAGTAGCAGCAGTAGTGGGGATGGGATTG GTGGTGCGCCGTTGATCAAGAATGCCTTACGGTGGCTTTCCAAGGGGGTG TTGCAACATACTCCGAACGCGGATGAGGGCGACCCTATCGAAGATTGGGC GGGTGAGGTGGAAGCGGCAGTTTCAACTCAGGGGAGATCAGGTGGGGAAA AGGAAGTAGCCGAGGGCTTCAAGCGTGAGAAGGCCTCTGCGGGTATGAGA AAGGAAATGGAGGAGGCAGAAGCTGAAGCGGTTCCTGTGGAGCGGCTGAG CGAAGCGGAGATGGCAGCATTGAAAAAACAATTGGGTGAGGAGAAAGAGG GAAATGAGGGTGAGAGCTGCGAGGATGAGAAGGAAACAAGCGAAGGAGAA ACGGGCGGCATCCTTTCCAACGCAAGCAGTAGTGGTGAGAGGAACAAGGA TCAACCCAAGGAGCAGCAAGAGTAG back to top
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