NO02G01120, NO02G01120 (gene) Nannochloropsis oceanica

Overview
NameNO02G01120
Unique NameNO02G01120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1405
Alignment locationchr2:353124..354528 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:353124..354528 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G01120 vs. NCBI_GenBank
Match: EWM30483.1 (hypothetical protein Naga_100013g94 [Nannochloropsis gaditana])

HSP 1 Score: 310.1 bits (793), Expect = 7.600e-81
Identity = 157/291 (53.95%), Postives = 201/291 (69.07%), Query Frame = 0 
Query:    7 ISPNKVVSPEGGATSRMTSLMDKLKNATTRISGAGDDTSASPSAISAGQAAGLRNRRENGTSVSASNTTGANVGAETAAESSNGKTLTTWQMYRQSRLSALAKWIYILAISLFFVAMYCGDF-SKQRSQQVLPRLTNNVAAFMGDYSKHMDLLGMPRIDLTRTWNGLADKASVNLALLGPRHSKALPRGTILYAGDYIFSCVKGGKDSNTSCMPTFFHLRDDGQLILARGTTPSKPFKVLWKSKAGPNKHGKYVAAYGENGSLEVRLGERRVWRARKFFQPRVLRPWPLTK 297
            I+P + ++ E        ++  + K+   R+  +   T+++  AI AGQAA   N R           +  NVG        NG+T +TWQ YRQSRLS LAKWIYIL ISLF VA+YCGDF S+QR+ QVLPR+T  VA  +  YS+ +D LG+PRID+T+ WNGLADKA    ++L P    AL RGT+++AGDYI++CV+ G ++   C PTFFHL+DDG L+LARGTTP +  + +WKSKAGP KHGKYVA YGENG+LEV LGE+R+WRARKFFQPRVLRPWPLTK
Sbjct:   51 ITPEEDINQESKTLMDGPAMRPEAKDGIARVPAS---TASTVPAIPAGQAASAHNCRV---------ISSQNVGV-------NGQTSSTWQAYRQSRLSTLAKWIYILMISLFLVALYCGDFSSQQRTHQVLPRITKKVALMLETYSQQLDALGLPRIDMTQFWNGLADKAPARFSVLQPLECPALARGTVMHAGDYIYACVEEGGNAGKECNPTFFHLKDDGSLLLARGTTPKRAIRTIWKSKAGPVKHGKYVATYGENGALEVYLGEKRIWRARKFFQPRVLRPWPLTK 322
The following BLAST results are available for this feature:
BLAST of NO02G01120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30483.17.600e-8153.95hypothetical protein Naga_100013g94 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR033ncniR033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006726NSK006726Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01120.1NO02G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100013g94gene124Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01120.1NO02G01120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01120 ID=NO02G01120|Name=NO02G01120|organism=Nannochloropsis oceanica|type=gene|length=1405bp
ATGCGCTTTGCGTCTCCCATCTCTCCCAACAAGGTGGTGTCGCCCGAAGg
tacgcttggatggtcttatgttgatagagatgggcggagctatgggcctc
gtgcgcaacgcggcatgtgtgacaccccccttcctccgcacctaaggtta
aacacacacacacacacacacacacacacacacacacacacacacacaca
cacacacacacacacacacacacacacacacacacacacacacacacaca
cacacacacacacacacacacacattgatgcactggcaaacaaatatact
gacacacagatgtacaggcatacagacacaggcagatacaccaagaaaaa
tagaaacacactcacactaacaaacacacaaacactcacagacacacaca
cacacatacacacacatacacctacacctttcacttctttggatgccagg
ttgctccagacatggacactgtataagcatagggcacatcctccgggtgc
aggcccctatcattgcatcggaatatatgttgatccttatccctccaacg
caccaacccacagGCGGCGCTACCTCCCGCATGACTAGTTTGATGGACAA
ATTGAAGAACGCGACGACGCGCATCTCCGGTGCAGGCGACGATACTTCTG
CCTCCCCCTCCGCTATTTCCGCAGGGCAAGCCGCGGGGCTGCGCAATCGC
CGGGAGAATGGCACATCCGTGTCTGCTTCGAATACCACTGGCGCCAACGT
TGGAGCGGAAACAGCGGCCGAGAGCTCGAATGGGAAAACGCTCACAACAT
GGCAGATGTACCGTCAGTCCCGCCTCTCGGCCTTGGCCAAATGGATCTAC
ATTTTGGCCATCTCCCTGTTTTTTGTCGCTATGTATTGTGGGGACTTTTC
AAAGCAGCGGTCCCAGCAGGTGCTTCCTCGCCTGACGAATAACGTGGCGG
CCTTTATGGGGGACTACTCTAAGCACATGGATTTGTTGGGTATGCCACGC
ATTGACCTGACCCGCACCTGGAATGGGCTGGCAGACAAGGCGAGTGTCAA
CCTGGCATTGCTCGGGCCTCGTCACAGTAAGGCGCTGCCCAGGGGGACGA
TTTTGTACGCCGGTGACTATATTTTTAGCTGTGTGAAGGGTGGGAAGGAT
AGCAACACTTCCTGCATGCCCACCTTTTTCCACCTCAGGGACGATGGTCA
ATTAATTCTGGCGCGAGGGACCACGCCAAGCAAACCCTTCAAGGTCCTGT
GGAAGAGCAAGGCTGGGCCCAACAAACACGGCAAGTATGTAGCTGCGTAC
GGGGAAAATGGATCGTTGGAAGTGCGCCTAGGGGAGAGGAGAGTCTGGCG
CGCCCGCAAATTTTTCCAGCCTCGGGTGCTTCGCCCGTGGCCACTGACCA
AGTAA
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protein sequence of NO02G01120.1

>NO02G01120.1-protein ID=NO02G01120.1-protein|Name=NO02G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MRFASPISPNKVVSPEGGATSRMTSLMDKLKNATTRISGAGDDTSASPSA
ISAGQAAGLRNRRENGTSVSASNTTGANVGAETAAESSNGKTLTTWQMYR
QSRLSALAKWIYILAISLFFVAMYCGDFSKQRSQQVLPRLTNNVAAFMGD
YSKHMDLLGMPRIDLTRTWNGLADKASVNLALLGPRHSKALPRGTILYAG
DYIFSCVKGGKDSNTSCMPTFFHLRDDGQLILARGTTPSKPFKVLWKSKA
GPNKHGKYVAAYGENGSLEVRLGERRVWRARKFFQPRVLRPWPLTK*
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Synonyms
Publications