NO02G01120.1, NO02G01120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01120.1
Unique NameNO02G01120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length891
Alignment locationchr2:353124..354528 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:353124..354528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G01120.1 vs.
Match: EWM30483.1 (hypothetical protein Naga_100013g94 [Nannochloropsis gaditana])

HSP 1 Score: 310.1 bits (793), Expect = 7.600e-81
Identity = 159/291 (54.64%), Postives = 200/291 (68.73%), Query Frame = 0
Query:   13 VSPEGGATSRMTSLMD------KLKNATTRISGAGDDTSASPSAISAGQAAGLRNRRENGTSVSASNTTGANVGAETAAESSNGKTLTTWQMYRQSRLSALAKWIYILAISLFFVAMYCGDFS-KQRSQQVLPRLTNNVAAFMGDYSKHMDLLGMPRIDLTRTWNGLADKASVNLALLGPRHSKALPRGTILYAGDYIFSCVKGGKDSNTSCMPTFFHLRDDGQLILARGTTPSKPFKVLWKSKAGPNKHGKYVAAYGENGSLEVRLGERRVWRARKFFQPRVLRPWPLTK 297
            ++PE        +LMD      + K+   R+  +   T+++  AI AGQAA   N R           +  NVG        NG+T +TWQ YRQSRLS LAKWIYIL ISLF VA+YCGDFS +QR+ QVLPR+T  VA  +  YS+ +D LG+PRID+T+ WNGLADKA    ++L P    AL RGT+++AGDYI++CV+ G ++   C PTFFHL+DDG L+LARGTTP +  + +WKSKAGP KHGKYVA YGENG+LEV LGE+R+WRARKFFQPRVLRPWPLTK
Sbjct:   51 ITPEEDINQESKTLMDGPAMRPEAKDGIARVPAS---TASTVPAIPAGQAASAHNCRV---------ISSQNVGV-------NGQTSSTWQAYRQSRLSTLAKWIYILMISLFLVALYCGDFSSQQRTHQVLPRITKKVALMLETYSQQLDALGLPRIDMTQFWNGLADKAPARFSVLQPLECPALARGTVMHAGDYIYACVEEGGNAGKECNPTFFHLKDDGSLLLARGTTPKRAIRTIWKSKAGPVKHGKYVATYGENGALEVYLGEKRIWRARKFFQPRVLRPWPLTK 322          
The following BLAST results are available for this feature:
BLAST of NO02G01120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30483.17.600e-8154.64hypothetical protein Naga_100013g94 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01120NO02G01120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01120.1NO02G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01120.1.cds1NO02G01120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01120.1.cds2NO02G01120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01120.1 ID=NO02G01120.1|Name=NO02G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=891bp
ATGCGCTTTGCGTCTCCCATCTCTCCCAACAAGGTGGTGTCGCCCGAAGG
CGGCGCTACCTCCCGCATGACTAGTTTGATGGACAAATTGAAGAACGCGA
CGACGCGCATCTCCGGTGCAGGCGACGATACTTCTGCCTCCCCCTCCGCT
ATTTCCGCAGGGCAAGCCGCGGGGCTGCGCAATCGCCGGGAGAATGGCAC
ATCCGTGTCTGCTTCGAATACCACTGGCGCCAACGTTGGAGCGGAAACAG
CGGCCGAGAGCTCGAATGGGAAAACGCTCACAACATGGCAGATGTACCGT
CAGTCCCGCCTCTCGGCCTTGGCCAAATGGATCTACATTTTGGCCATCTC
CCTGTTTTTTGTCGCTATGTATTGTGGGGACTTTTCAAAGCAGCGGTCCC
AGCAGGTGCTTCCTCGCCTGACGAATAACGTGGCGGCCTTTATGGGGGAC
TACTCTAAGCACATGGATTTGTTGGGTATGCCACGCATTGACCTGACCCG
CACCTGGAATGGGCTGGCAGACAAGGCGAGTGTCAACCTGGCATTGCTCG
GGCCTCGTCACAGTAAGGCGCTGCCCAGGGGGACGATTTTGTACGCCGGT
GACTATATTTTTAGCTGTGTGAAGGGTGGGAAGGATAGCAACACTTCCTG
CATGCCCACCTTTTTCCACCTCAGGGACGATGGTCAATTAATTCTGGCGC
GAGGGACCACGCCAAGCAAACCCTTCAAGGTCCTGTGGAAGAGCAAGGCT
GGGCCCAACAAACACGGCAAGTATGTAGCTGCGTACGGGGAAAATGGATC
GTTGGAAGTGCGCCTAGGGGAGAGGAGAGTCTGGCGCGCCCGCAAATTTT
TCCAGCCTCGGGTGCTTCGCCCGTGGCCACTGACCAAGTAA
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protein sequence of NO02G01120.1

>NO02G01120.1-protein ID=NO02G01120.1-protein|Name=NO02G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MRFASPISPNKVVSPEGGATSRMTSLMDKLKNATTRISGAGDDTSASPSA
ISAGQAAGLRNRRENGTSVSASNTTGANVGAETAAESSNGKTLTTWQMYR
QSRLSALAKWIYILAISLFFVAMYCGDFSKQRSQQVLPRLTNNVAAFMGD
YSKHMDLLGMPRIDLTRTWNGLADKASVNLALLGPRHSKALPRGTILYAG
DYIFSCVKGGKDSNTSCMPTFFHLRDDGQLILARGTTPSKPFKVLWKSKA
GPNKHGKYVAAYGENGSLEVRLGERRVWRARKFFQPRVLRPWPLTK*
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mRNA from alignment at chr2:353124..354528+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01120.1 ID=NO02G01120.1|Name=NO02G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1405bp|location=Sequence derived from alignment at chr2:353124..354528+ (Nannochloropsis oceanica)
ATGCGCTTTGCGTCTCCCATCTCTCCCAACAAGGTGGTGTCGCCCGAAGG TACGCTTGGATGGTCTTATGTTGATAGAGATGGGCGGAGCTATGGGCCTC GTGCGCAACGCGGCATGTGTGACACCCCCCTTCCTCCGCACCTAAGGTTA AACACACACACACACACACACACACACACACACACACACACACACACACA CACACACACACACACACACACACACACACACACACACACACACACACACA CACACACACACACACACACACACATTGATGCACTGGCAAACAAATATACT GACACACAGATGTACAGGCATACAGACACAGGCAGATACACCAAGAAAAA TAGAAACACACTCACACTAACAAACACACAAACACTCACAGACACACACA CACACATACACACACATACACCTACACCTTTCACTTCTTTGGATGCCAGG TTGCTCCAGACATGGACACTGTATAAGCATAGGGCACATCCTCCGGGTGC AGGCCCCTATCATTGCATCGGAATATATGTTGATCCTTATCCCTCCAACG CACCAACCCACAGGCGGCGCTACCTCCCGCATGACTAGTTTGATGGACAA ATTGAAGAACGCGACGACGCGCATCTCCGGTGCAGGCGACGATACTTCTG CCTCCCCCTCCGCTATTTCCGCAGGGCAAGCCGCGGGGCTGCGCAATCGC CGGGAGAATGGCACATCCGTGTCTGCTTCGAATACCACTGGCGCCAACGT TGGAGCGGAAACAGCGGCCGAGAGCTCGAATGGGAAAACGCTCACAACAT GGCAGATGTACCGTCAGTCCCGCCTCTCGGCCTTGGCCAAATGGATCTAC ATTTTGGCCATCTCCCTGTTTTTTGTCGCTATGTATTGTGGGGACTTTTC AAAGCAGCGGTCCCAGCAGGTGCTTCCTCGCCTGACGAATAACGTGGCGG CCTTTATGGGGGACTACTCTAAGCACATGGATTTGTTGGGTATGCCACGC ATTGACCTGACCCGCACCTGGAATGGGCTGGCAGACAAGGCGAGTGTCAA CCTGGCATTGCTCGGGCCTCGTCACAGTAAGGCGCTGCCCAGGGGGACGA TTTTGTACGCCGGTGACTATATTTTTAGCTGTGTGAAGGGTGGGAAGGAT AGCAACACTTCCTGCATGCCCACCTTTTTCCACCTCAGGGACGATGGTCA ATTAATTCTGGCGCGAGGGACCACGCCAAGCAAACCCTTCAAGGTCCTGT GGAAGAGCAAGGCTGGGCCCAACAAACACGGCAAGTATGTAGCTGCGTAC GGGGAAAATGGATCGTTGGAAGTGCGCCTAGGGGAGAGGAGAGTCTGGCG CGCCCGCAAATTTTTCCAGCCTCGGGTGCTTCGCCCGTGGCCACTGACCA AGTAA
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Coding sequence (CDS) from alignment at chr2:353124..354528+

>NO02G01120.1 ID=NO02G01120.1|Name=NO02G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=891bp|location=Sequence derived from alignment at chr2:353124..354528+ (Nannochloropsis oceanica)
ATGCGCTTTGCGTCTCCCATCTCTCCCAACAAGGTGGTGTCGCCCGAAGG
CGGCGCTACCTCCCGCATGACTAGTTTGATGGACAAATTGAAGAACGCGA
CGACGCGCATCTCCGGTGCAGGCGACGATACTTCTGCCTCCCCCTCCGCT
ATTTCCGCAGGGCAAGCCGCGGGGCTGCGCAATCGCCGGGAGAATGGCAC
ATCCGTGTCTGCTTCGAATACCACTGGCGCCAACGTTGGAGCGGAAACAG
CGGCCGAGAGCTCGAATGGGAAAACGCTCACAACATGGCAGATGTACCGT
CAGTCCCGCCTCTCGGCCTTGGCCAAATGGATCTACATTTTGGCCATCTC
CCTGTTTTTTGTCGCTATGTATTGTGGGGACTTTTCAAAGCAGCGGTCCC
AGCAGGTGCTTCCTCGCCTGACGAATAACGTGGCGGCCTTTATGGGGGAC
TACTCTAAGCACATGGATTTGTTGGGTATGCCACGCATTGACCTGACCCG
CACCTGGAATGGGCTGGCAGACAAGGCGAGTGTCAACCTGGCATTGCTCG
GGCCTCGTCACAGTAAGGCGCTGCCCAGGGGGACGATTTTGTACGCCGGT
GACTATATTTTTAGCTGTGTGAAGGGTGGGAAGGATAGCAACACTTCCTG
CATGCCCACCTTTTTCCACCTCAGGGACGATGGTCAATTAATTCTGGCGC
GAGGGACCACGCCAAGCAAACCCTTCAAGGTCCTGTGGAAGAGCAAGGCT
GGGCCCAACAAACACGGCAAGTATGTAGCTGCGTACGGGGAAAATGGATC
GTTGGAAGTGCGCCTAGGGGAGAGGAGAGTCTGGCGCGCCCGCAAATTTT
TCCAGCCTCGGGTGCTTCGCCCGTGGCCACTGACCAAGTAA
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Synonyms
Publications