NO02G01010, NO02G01010 (gene) Nannochloropsis oceanica

Overview
NameNO02G01010
Unique NameNO02G01010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2021
Alignment locationchr2:314075..316095 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:314075..316095 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G01010 vs. NCBI_GenBank
Match: EWM30594.1 (hypothetical protein Naga_100033g43 [Nannochloropsis gaditana])

HSP 1 Score: 105.1 bits (261), Expect = 7.100e-19
Identity = 175/380 (46.05%), Postives = 191/380 (50.26%), Query Frame = 0 
Query:  199 GSHSTVIVEPRTWPGINKHGGVGRLTKDNGDGTYSVKYLLGGSEKGVDRCYIQCNAV-------EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERKGKVTGNGCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRDYTSPGSGDKLASPCKKAATSPLPTTTVTANQKYDNRGDAKMQSREAAEESPHTRYSPPRPSLEDVRLQAFKTKLSQAVVEMGGGEDQISLENLRGMVEKQQKQQGEKEGEIGFTGEEVAKFLKRLEADNHLMVVGQTVYIV 572
            G+H+TV VE RTW GINK GGVGRLTKDNGDGT++VKYLLGGSE+ VDRCYIQCNAV                                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              + +G+  G G S                                                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RD          AS    A   P         Q    RG   +Q    A  S H    PP     D R   FK KLSQAV+E  GG DQISLE L+G V          EG+  F+GEE+  FL+RLEADNHLM+V QTVYIV
Sbjct:  211 GAHATVTVEARTWTGINKQGGVGRLTKDNGDGTFNVKYLLGGSERRVDRCYIQCNAVAGADPGEAGKRAVKGPEFFVPQADIPVSSGAEAARGSARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGEDWTTSGTKPAKGRGRADGTGPS----------------GQKRSLVQANQPQATSHPATKARGPMHKSESRKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPRD----------ASVQADAPIHP---------QARQERG---VQDVGEAVPSEHAAVPPP---AADTRFLDFKRKLSQAVIENVGGLDQISLEQLKGAV--------VGEGQGCFSGEEMDTFLQRLEADNHLMLVDQTVYIV 541
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BLAST of NO02G01010 vs. NCBI_GenBank
Match: OEU15929.1 (hypothetical protein FRACYDRAFT_240624 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 70.1 bits (170), Expect = 2.500e-8
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 0 
Query:  200 SHSTVI-VEPRTWPGINKHGGVGRLTKDNGDGTYSVKYLLGGSEKGVDRCYI 251
            S  T++ V  RTWPG+NKHGGVGR+T  N DGTY+V Y+LGG E  V+ C++
Sbjct: 1031 SKGTIVNVASRTWPGVNKHGGVGRITAMNTDGTYNVSYVLGGKESNVEVCFM 1082
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BLAST of NO02G01010 vs. NCBI_GenBank
Match: EJK66816.1 (hypothetical protein THAOC_12222, partial [Thalassiosira oceanica])

HSP 1 Score: 67.8 bits (164), Expect = 1.300e-7
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0 
Query:  202 STVIVEPRTWPGINKHGGVGRLTK-----DNGDGTYSVKYLLGGSEKGVDRCYIQCN 254
            S V V+ RTWPGINK GGVGR+T+     D+    Y +KY+LGGSEK VD CY+  N
Sbjct:  197 SIVCVQSRTWPGINKPGGVGRVTRVHAANDSNVIKYDIKYILGGSEKNVDACYVTLN 253
The following BLAST results are available for this feature:
BLAST of NO02G01010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM30594.17.100e-1946.05hypothetical protein Naga_100033g43 [Nannochlorops... [more]
OEU15929.12.500e-857.69hypothetical protein FRACYDRAFT_240624 [Fragilario... [more]
EJK66816.11.300e-756.14hypothetical protein THAOC_12222, partial [Thalass... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006707NSK006707Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G01010.1NO02G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667700gene_678Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100033g43gene114Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G01010.1NO02G01010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G01010 ID=NO02G01010|Name=NO02G01010|organism=Nannochloropsis oceanica|type=gene|length=2021bp
CCACAGGCGCACGGTCACGCCCCAGCAAGCCATGAAGGACGAAGATGATG
TGACACTGGGCGACATCGTGGCCTCGGTAATCTCCTCACAAGAAGCTGCT
ACGAATCCGAAGCCCAAATCCCAAGCCTCGCCGTCGCCTCCCGCCAAGGA
AGAAGAGGAGGTGGAGGTGCATGAACCACCACAGCAGGACCGGAAAAAGG
AAGAGGGGAAGAAAGGATTGATTACCATGTTGTCATCATCAAAGAAAAAA
GCTGCACCCGTGCTGAAACCAATCCCTGTCCTTTCCGAGGCTGGTCCTGC
AGGTGGTGTGGATGACGATGCGCCGGTGGCAATGGAAGAGGAGAGAGAGG
ACCACCGAAAAGAGCGGGAGCAGAAACAAGTGGAGATCAAAGTCAAGAAT
GGGGTAGATGACAAAAACGACGACGGCGAGGGAATCCCTGCTGGTCCCTC
CCCCACGCCTGCCGTCCCAATGGAGGCGATCACTCCTGCGCCTCCAGAAG
AAGCCGCTGTCCCTGTTGATGATGCGCCCGCATCCGACCCAAAACCAGTC
ATCGCCACCACCACCATCACTTCTAGCAGCAGCAGTAGCAAGAAGAGCAA
AGCCAATGCCTTGGCATGTTTGTGCGGTTCGCATTCCACCGTTATCGTGG
AACCGCGGACCTGGCCCGGGATTAACAAGCATGGGGGGGTGGGGCGTCTC
ACGAAGGACAACGGAGATGGGACGTACAGCGTAAAGTATTTGCTAGGTGG
GAGCGAAAAAGGAGTCGATCGGTGTTACATCCAATGCAATGCTGTAGAGG
CAGCAGAAGGGGCTGAGCCCGCTAAGCGCGAAGTGAAGGAGCGAGAGTTT
TTCGAGCCTGAAGTACCTGTCCGTCCTGCTGCTCCTGCTGCTCCTGCTGC
TCCTGCTGCTGCTACTTCTTCTGTAGCAGGCACTGGTCATCGTCCTACGA
GAGCCAAAGCTGCCGTCTTTGCGGTTGCTGCACCGATGGATGAAGCGGAA
GAGGAAGAGAAGGAGCTAGAGGACGTCCCAGAGAGGAAAGGCAAAGTGAC
AGGAAACGGCTGCAGCAGCAATAGCAGCAGCAATAAGCGAACGCTGGCGG
AGGCCAGTAAAGGGAAATCCACTAACCTTTCTCGGTCGAAGGTTCCGCAG
CCATCAAAACAGAAAGCATCACCCAAAAAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCGCCAACGAAAGCAACAGCCGCAGAAGCACGGGAAGCAAG
GAAACGATGAGAACCAAGAAGAAGATGAAAGAGAAGACGTGGACGAGAAT
GAGCGACCATCCTCAAGAGATTACACCTCTCCTGGAAGTGGGGATAAACT
CGCTTCTCCCTGCAAGAAAGCTGCTACTTCCCCCCTTCCCACCACGACCG
TCACCGCCAACCAAAAATACGACAACAGAGGAGATGCAAAAATGCAGTCA
CGGGAGGCGGCGGAAGAATCCCCTCATACGCGGTATTCTCCTCCACGACC
TTCTTTGGAGGATGTGAGGTTGCAGGCCTTCAAAACCAAGTTGTCGCAGG
CCGTGGTGGAGATGGGGGGAGGGGAGGACCAGATCTCGCTAGAGAACTTG
AGGGGAATGGTAGAGAAGCAGCAAAAACAACAGGGGGAGAAGGAGGGAGA
GATAGGATTCACGGGGGAGGAGGTGGCAAAGTTTTTGAAGAGGCTGGAGG
CGGATAATCACTTGATGGTTGTGGGTCAGACTGTGTACATTGTGTGAGCG
TGAGGGCCTGACGAAGAGAGGGAGGGGGAAAAGAGGGCGAGTGAGATGAG
TCGGGTGCCCAGTACGTAGGATATTTGGGGGGGAAGTGAGGGCTGTAGGC
TGGAAATCGAGTAGGAGGGTGGGGGGAAGGGAGGGAAGGTCGGTACAGAG
GGTTGCGCCACAAATGGAATGCTTTTGTGTGTGAGTCGGGGTACTTACAC
GGCATGAAGCCTGGGAAAGGATCGTATGAACGCAGCATGAGAGAATAAGA
CACAGTAAACGCAGGATGGAG
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protein sequence of NO02G01010.1

>NO02G01010.1-protein ID=NO02G01010.1-protein|Name=NO02G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MKDEDDVTLGDIVASVISSQEAATNPKPKSQASPSPPAKEEEEVEVHEPP
QQDRKKEEGKKGLITMLSSSKKKAAPVLKPIPVLSEAGPAGGVDDDAPVA
MEEEREDHRKEREQKQVEIKVKNGVDDKNDDGEGIPAGPSPTPAVPMEAI
TPAPPEEAAVPVDDAPASDPKPVIATTTITSSSSSSKKSKANALACLCGS
HSTVIVEPRTWPGINKHGGVGRLTKDNGDGTYSVKYLLGGSEKGVDRCYI
QCNAVEAAEGAEPAKREVKEREFFEPEVPVRPAAPAAPAAPAAATSSVAG
TGHRPTRAKAAVFAVAAPMDEAEEEEKELEDVPERKGKVTGNGCSSNSSS
NKRTLAEASKGKSTNLSRSKVPQPSKQKASPKKQQQQQQQQQQRQRKQQP
QKHGKQGNDENQEEDEREDVDENERPSSRDYTSPGSGDKLASPCKKAATS
PLPTTTVTANQKYDNRGDAKMQSREAAEESPHTRYSPPRPSLEDVRLQAF
KTKLSQAVVEMGGGEDQISLENLRGMVEKQQKQQGEKEGEIGFTGEEVAK
FLKRLEADNHLMVVGQTVYIV*
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Synonyms
Publications