NO02G01010.1, NO02G01010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01010.1
Unique NameNO02G01010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2021
Alignment locationchr2:314075..316095 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:314075..316095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01010.1 vs.
Match: EWM30594.1 (hypothetical protein Naga_100033g43 [Nannochloropsis gaditana])

HSP 1 Score: 166.0 bits (419), Expect = 3.400e-37
Identity = 154/396 (38.89%), Postives = 202/396 (51.01%), Query Frame = 0 
Query:  177 TTITSSSSSSKKSKANALACLCGSHSTVIVEPRTWPGINKHGGVGRLTKDNGDGTYSVKYLLGGSEKGVDRCYIQCNAVEAAEGAEPAKREVKEREFFEPEVPVRPAAPAAPAAPAAATSSVAGTGHRPTRAKAAVFAVAAPMDEAEEEEKELE-DVPERKGKVTGNGCSSNSSSNKRTLAEASKGKSTNLSRSKVPQPSKQKASPKKQQQQQQQQQQRQRKQQPQKHGKQGNDENQEEDEREDVDENERPSSRDYTSPGSGDKLASPCKKAATSPLPTTTVTANQKYDNRGDAKMQSREAAEESPHTRYSPPRPSLEDVRLQAFKTKLSQAVVEMGGGEDQISLENLRGMVEKQQKQQGEKEGEIGFTGEEVAKFLKRLEADNHLMVVGQTVYIV 572
            T +     S++K    A  CLCG+H+TV VE RTW GINK GGVGRLTKDNGDGT++VKYLLGGSE+ VDRCYIQCNAV  A+  E  KR VK  EFF P+  +    P +  A AA      G+  RP   +      A P ++ E+ EK+ E    ER+GK    G    +S  K      +KG+     R+    PS QK S  +  Q Q       + + P            + + R+      +           GD  A   + A++SP    +V A+     +   +   ++  E  P    + P P+  D R   FK KLSQAV+E  GG DQISLE L+G V          EG+  F+GEE+  FL+RLEADNHLM+V QTVYIV
Sbjct:  192 TAVPPDDDSNEK---RASTCLCGAHATVTVEARTWTGINKQGGVGRLTKDNGDGTFNVKYLLGGSERRVDRCYIQCNAVAGADPGEAGKRAVKGPEFFVPQADI----PVSSGAEAA-----RGSARRPRNPR------AEPEEQTEQGEKQAEKQEKERRGKEDARGEDWTTSGTK-----PAKGR----GRADGTGPSGQKRSLVQANQPQATSHPATKARGPM----------HKSESRKMAPPPPQGGGSGTCMTSKGDPSAVAERAASSSPPRDASVQADAPIHPQARQERGVQDVGEAVPSEHAAVPPPA-ADTRFLDFKRKLSQAVIENVGGLDQISLEQLKGAV--------VGEGQGCFSGEEMDTFLQRLEADNHLMLVDQTVYIV 541
The following BLAST results are available for this feature:
BLAST of NO02G01010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30594.13.400e-3738.89hypothetical protein Naga_100033g43 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01010NO02G01010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01010.1NO02G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01010.1.cds1NO02G01010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01010.1 ID=NO02G01010.1|Name=NO02G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2021bp
CCACAGGCGCACGGTCACGCCCCAGCAAGCCATGAAGGACGAAGATGATG
TGACACTGGGCGACATCGTGGCCTCGGTAATCTCCTCACAAGAAGCTGCT
ACGAATCCGAAGCCCAAATCCCAAGCCTCGCCGTCGCCTCCCGCCAAGGA
AGAAGAGGAGGTGGAGGTGCATGAACCACCACAGCAGGACCGGAAAAAGG
AAGAGGGGAAGAAAGGATTGATTACCATGTTGTCATCATCAAAGAAAAAA
GCTGCACCCGTGCTGAAACCAATCCCTGTCCTTTCCGAGGCTGGTCCTGC
AGGTGGTGTGGATGACGATGCGCCGGTGGCAATGGAAGAGGAGAGAGAGG
ACCACCGAAAAGAGCGGGAGCAGAAACAAGTGGAGATCAAAGTCAAGAAT
GGGGTAGATGACAAAAACGACGACGGCGAGGGAATCCCTGCTGGTCCCTC
CCCCACGCCTGCCGTCCCAATGGAGGCGATCACTCCTGCGCCTCCAGAAG
AAGCCGCTGTCCCTGTTGATGATGCGCCCGCATCCGACCCAAAACCAGTC
ATCGCCACCACCACCATCACTTCTAGCAGCAGCAGTAGCAAGAAGAGCAA
AGCCAATGCCTTGGCATGTTTGTGCGGTTCGCATTCCACCGTTATCGTGG
AACCGCGGACCTGGCCCGGGATTAACAAGCATGGGGGGGTGGGGCGTCTC
ACGAAGGACAACGGAGATGGGACGTACAGCGTAAAGTATTTGCTAGGTGG
GAGCGAAAAAGGAGTCGATCGGTGTTACATCCAATGCAATGCTGTAGAGG
CAGCAGAAGGGGCTGAGCCCGCTAAGCGCGAAGTGAAGGAGCGAGAGTTT
TTCGAGCCTGAAGTACCTGTCCGTCCTGCTGCTCCTGCTGCTCCTGCTGC
TCCTGCTGCTGCTACTTCTTCTGTAGCAGGCACTGGTCATCGTCCTACGA
GAGCCAAAGCTGCCGTCTTTGCGGTTGCTGCACCGATGGATGAAGCGGAA
GAGGAAGAGAAGGAGCTAGAGGACGTCCCAGAGAGGAAAGGCAAAGTGAC
AGGAAACGGCTGCAGCAGCAATAGCAGCAGCAATAAGCGAACGCTGGCGG
AGGCCAGTAAAGGGAAATCCACTAACCTTTCTCGGTCGAAGGTTCCGCAG
CCATCAAAACAGAAAGCATCACCCAAAAAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCGCCAACGAAAGCAACAGCCGCAGAAGCACGGGAAGCAAG
GAAACGATGAGAACCAAGAAGAAGATGAAAGAGAAGACGTGGACGAGAAT
GAGCGACCATCCTCAAGAGATTACACCTCTCCTGGAAGTGGGGATAAACT
CGCTTCTCCCTGCAAGAAAGCTGCTACTTCCCCCCTTCCCACCACGACCG
TCACCGCCAACCAAAAATACGACAACAGAGGAGATGCAAAAATGCAGTCA
CGGGAGGCGGCGGAAGAATCCCCTCATACGCGGTATTCTCCTCCACGACC
TTCTTTGGAGGATGTGAGGTTGCAGGCCTTCAAAACCAAGTTGTCGCAGG
CCGTGGTGGAGATGGGGGGAGGGGAGGACCAGATCTCGCTAGAGAACTTG
AGGGGAATGGTAGAGAAGCAGCAAAAACAACAGGGGGAGAAGGAGGGAGA
GATAGGATTCACGGGGGAGGAGGTGGCAAAGTTTTTGAAGAGGCTGGAGG
CGGATAATCACTTGATGGTTGTGGGTCAGACTGTGTACATTGTGTGAGCG
TGAGGGCCTGACGAAGAGAGGGAGGGGGAAAAGAGGGCGAGTGAGATGAG
TCGGGTGCCCAGTACGTAGGATATTTGGGGGGGAAGTGAGGGCTGTAGGC
TGGAAATCGAGTAGGAGGGTGGGGGGAAGGGAGGGAAGGTCGGTACAGAG
GGTTGCGCCACAAATGGAATGCTTTTGTGTGTGAGTCGGGGTACTTACAC
GGCATGAAGCCTGGGAAAGGATCGTATGAACGCAGCATGAGAGAATAAGA
CACAGTAAACGCAGGATGGAG
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protein sequence of NO02G01010.1

>NO02G01010.1-protein ID=NO02G01010.1-protein|Name=NO02G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MKDEDDVTLGDIVASVISSQEAATNPKPKSQASPSPPAKEEEEVEVHEPP
QQDRKKEEGKKGLITMLSSSKKKAAPVLKPIPVLSEAGPAGGVDDDAPVA
MEEEREDHRKEREQKQVEIKVKNGVDDKNDDGEGIPAGPSPTPAVPMEAI
TPAPPEEAAVPVDDAPASDPKPVIATTTITSSSSSSKKSKANALACLCGS
HSTVIVEPRTWPGINKHGGVGRLTKDNGDGTYSVKYLLGGSEKGVDRCYI
QCNAVEAAEGAEPAKREVKEREFFEPEVPVRPAAPAAPAAPAAATSSVAG
TGHRPTRAKAAVFAVAAPMDEAEEEEKELEDVPERKGKVTGNGCSSNSSS
NKRTLAEASKGKSTNLSRSKVPQPSKQKASPKKQQQQQQQQQQRQRKQQP
QKHGKQGNDENQEEDEREDVDENERPSSRDYTSPGSGDKLASPCKKAATS
PLPTTTVTANQKYDNRGDAKMQSREAAEESPHTRYSPPRPSLEDVRLQAF
KTKLSQAVVEMGGGEDQISLENLRGMVEKQQKQQGEKEGEIGFTGEEVAK
FLKRLEADNHLMVVGQTVYIV*
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mRNA from alignment at chr2:314075..316095+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01010.1 ID=NO02G01010.1|Name=NO02G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2021bp|location=Sequence derived from alignment at chr2:314075..316095+ (Nannochloropsis oceanica)
CCACAGGCGCACGGTCACGCCCCAGCAAGCCATGAAGGACGAAGATGATG
TGACACTGGGCGACATCGTGGCCTCGGTAATCTCCTCACAAGAAGCTGCT
ACGAATCCGAAGCCCAAATCCCAAGCCTCGCCGTCGCCTCCCGCCAAGGA
AGAAGAGGAGGTGGAGGTGCATGAACCACCACAGCAGGACCGGAAAAAGG
AAGAGGGGAAGAAAGGATTGATTACCATGTTGTCATCATCAAAGAAAAAA
GCTGCACCCGTGCTGAAACCAATCCCTGTCCTTTCCGAGGCTGGTCCTGC
AGGTGGTGTGGATGACGATGCGCCGGTGGCAATGGAAGAGGAGAGAGAGG
ACCACCGAAAAGAGCGGGAGCAGAAACAAGTGGAGATCAAAGTCAAGAAT
GGGGTAGATGACAAAAACGACGACGGCGAGGGAATCCCTGCTGGTCCCTC
CCCCACGCCTGCCGTCCCAATGGAGGCGATCACTCCTGCGCCTCCAGAAG
AAGCCGCTGTCCCTGTTGATGATGCGCCCGCATCCGACCCAAAACCAGTC
ATCGCCACCACCACCATCACTTCTAGCAGCAGCAGTAGCAAGAAGAGCAA
AGCCAATGCCTTGGCATGTTTGTGCGGTTCGCATTCCACCGTTATCGTGG
AACCGCGGACCTGGCCCGGGATTAACAAGCATGGGGGGGTGGGGCGTCTC
ACGAAGGACAACGGAGATGGGACGTACAGCGTAAAGTATTTGCTAGGTGG
GAGCGAAAAAGGAGTCGATCGGTGTTACATCCAATGCAATGCTGTAGAGG
CAGCAGAAGGGGCTGAGCCCGCTAAGCGCGAAGTGAAGGAGCGAGAGTTT
TTCGAGCCTGAAGTACCTGTCCGTCCTGCTGCTCCTGCTGCTCCTGCTGC
TCCTGCTGCTGCTACTTCTTCTGTAGCAGGCACTGGTCATCGTCCTACGA
GAGCCAAAGCTGCCGTCTTTGCGGTTGCTGCACCGATGGATGAAGCGGAA
GAGGAAGAGAAGGAGCTAGAGGACGTCCCAGAGAGGAAAGGCAAAGTGAC
AGGAAACGGCTGCAGCAGCAATAGCAGCAGCAATAAGCGAACGCTGGCGG
AGGCCAGTAAAGGGAAATCCACTAACCTTTCTCGGTCGAAGGTTCCGCAG
CCATCAAAACAGAAAGCATCACCCAAAAAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCGCCAACGAAAGCAACAGCCGCAGAAGCACGGGAAGCAAG
GAAACGATGAGAACCAAGAAGAAGATGAAAGAGAAGACGTGGACGAGAAT
GAGCGACCATCCTCAAGAGATTACACCTCTCCTGGAAGTGGGGATAAACT
CGCTTCTCCCTGCAAGAAAGCTGCTACTTCCCCCCTTCCCACCACGACCG
TCACCGCCAACCAAAAATACGACAACAGAGGAGATGCAAAAATGCAGTCA
CGGGAGGCGGCGGAAGAATCCCCTCATACGCGGTATTCTCCTCCACGACC
TTCTTTGGAGGATGTGAGGTTGCAGGCCTTCAAAACCAAGTTGTCGCAGG
CCGTGGTGGAGATGGGGGGAGGGGAGGACCAGATCTCGCTAGAGAACTTG
AGGGGAATGGTAGAGAAGCAGCAAAAACAACAGGGGGAGAAGGAGGGAGA
GATAGGATTCACGGGGGAGGAGGTGGCAAAGTTTTTGAAGAGGCTGGAGG
CGGATAATCACTTGATGGTTGTGGGTCAGACTGTGTACATTGTGTGAGCG
TGAGGGCCTGACGAAGAGAGGGAGGGGGAAAAGAGGGCGAGTGAGATGAG
TCGGGTGCCCAGTACGTAGGATATTTGGGGGGGAAGTGAGGGCTGTAGGC
TGGAAATCGAGTAGGAGGGTGGGGGGAAGGGAGGGAAGGTCGGTACAGAG
GGTTGCGCCACAAATGGAATGCTTTTGTGTGTGAGTCGGGGTACTTACAC
GGCATGAAGCCTGGGAAAGGATCGTATGAACGCAGCATGAGAGAATAAGA
CACAGTAAACGCAGGATGGAG
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Coding sequence (CDS) from alignment at chr2:314075..316095+

>NO02G01010.1 ID=NO02G01010.1|Name=NO02G01010.1|organism=Nannochloropsis oceanica|type=CDS|length=1716bp|location=Sequence derived from alignment at chr2:314075..316095+ (Nannochloropsis oceanica)
ATGAAGGACGAAGATGATGTGACACTGGGCGACATCGTGGCCTCGGTAAT
CTCCTCACAAGAAGCTGCTACGAATCCGAAGCCCAAATCCCAAGCCTCGC
CGTCGCCTCCCGCCAAGGAAGAAGAGGAGGTGGAGGTGCATGAACCACCA
CAGCAGGACCGGAAAAAGGAAGAGGGGAAGAAAGGATTGATTACCATGTT
GTCATCATCAAAGAAAAAAGCTGCACCCGTGCTGAAACCAATCCCTGTCC
TTTCCGAGGCTGGTCCTGCAGGTGGTGTGGATGACGATGCGCCGGTGGCA
ATGGAAGAGGAGAGAGAGGACCACCGAAAAGAGCGGGAGCAGAAACAAGT
GGAGATCAAAGTCAAGAATGGGGTAGATGACAAAAACGACGACGGCGAGG
GAATCCCTGCTGGTCCCTCCCCCACGCCTGCCGTCCCAATGGAGGCGATC
ACTCCTGCGCCTCCAGAAGAAGCCGCTGTCCCTGTTGATGATGCGCCCGC
ATCCGACCCAAAACCAGTCATCGCCACCACCACCATCACTTCTAGCAGCA
GCAGTAGCAAGAAGAGCAAAGCCAATGCCTTGGCATGTTTGTGCGGTTCG
CATTCCACCGTTATCGTGGAACCGCGGACCTGGCCCGGGATTAACAAGCA
TGGGGGGGTGGGGCGTCTCACGAAGGACAACGGAGATGGGACGTACAGCG
TAAAGTATTTGCTAGGTGGGAGCGAAAAAGGAGTCGATCGGTGTTACATC
CAATGCAATGCTGTAGAGGCAGCAGAAGGGGCTGAGCCCGCTAAGCGCGA
AGTGAAGGAGCGAGAGTTTTTCGAGCCTGAAGTACCTGTCCGTCCTGCTG
CTCCTGCTGCTCCTGCTGCTCCTGCTGCTGCTACTTCTTCTGTAGCAGGC
ACTGGTCATCGTCCTACGAGAGCCAAAGCTGCCGTCTTTGCGGTTGCTGC
ACCGATGGATGAAGCGGAAGAGGAAGAGAAGGAGCTAGAGGACGTCCCAG
AGAGGAAAGGCAAAGTGACAGGAAACGGCTGCAGCAGCAATAGCAGCAGC
AATAAGCGAACGCTGGCGGAGGCCAGTAAAGGGAAATCCACTAACCTTTC
TCGGTCGAAGGTTCCGCAGCCATCAAAACAGAAAGCATCACCCAAAAAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCCAACGAAAGCAACAGCCG
CAGAAGCACGGGAAGCAAGGAAACGATGAGAACCAAGAAGAAGATGAAAG
AGAAGACGTGGACGAGAATGAGCGACCATCCTCAAGAGATTACACCTCTC
CTGGAAGTGGGGATAAACTCGCTTCTCCCTGCAAGAAAGCTGCTACTTCC
CCCCTTCCCACCACGACCGTCACCGCCAACCAAAAATACGACAACAGAGG
AGATGCAAAAATGCAGTCACGGGAGGCGGCGGAAGAATCCCCTCATACGC
GGTATTCTCCTCCACGACCTTCTTTGGAGGATGTGAGGTTGCAGGCCTTC
AAAACCAAGTTGTCGCAGGCCGTGGTGGAGATGGGGGGAGGGGAGGACCA
GATCTCGCTAGAGAACTTGAGGGGAATGGTAGAGAAGCAGCAAAAACAAC
AGGGGGAGAAGGAGGGAGAGATAGGATTCACGGGGGAGGAGGTGGCAAAG
TTTTTGAAGAGGCTGGAGGCGGATAATCACTTGATGGTTGTGGGTCAGAC
TGTGTACATTGTGTGA
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Synonyms
Publications