NO02G00910, NO02G00910 (gene) Nannochloropsis oceanica

Overview
NameNO02G00910
Unique NameNO02G00910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1373
Alignment locationchr2:292032..293404 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:292032..293404 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO02G00910 vs. NCBI_GenBank
Match: EWM30566.1 (hypothetical protein Naga_100033g28 [Nannochloropsis gaditana])

HSP 1 Score: 525.0 bits (1351), Expect = 2.100e-145
Identity = 246/414 (59.42%), Postives = 310/414 (74.88%), Query Frame = 0 
Query:   12 LVFLLLPYLTHGRACQVRNYAGRPVNFYWMDVVNWGNYISQTKVPLPHATSTPLKTYETHRFFAAFADEASEVPSWDPDSIPLNAQFVHRGFDQVVTALVNEDGQLYLDDWDIHEGEMARLARAVSKCNETAT--ADYEDSHAACVLAEAGVLLQSLERERDNIEALVTRMETRLAGAFCTGTGRFQTPSKHSFLWQGRKVDVLAETNNLTVFHLPAFLDASATETLLLSAPANGTRHVDIHTNPKLSFDVSLAARQEWAQGFVSAQLGGKGGMEDGNKEEEALHIFRYNQKQVHAPPCDGICQSLSLHPSQYAATLLLYPQHSDQETKEMAAWLFTTEEEGTQIGFTSQGNDAVIFLYKNPEVGYMPALLPQLIPCPGMPKEMFVASQWIRR------VGGQGGERGSVGDEL 418
            L+F  L      R CQVRN+AGRPV+FYWMDVVNWG YI+QT VP+P+ TS  LKTYE+HRFF A+ DEA EV SWDP+SIPLNAQFVHRG+DQVVTALV+++GQLYL DWD+HE  M RL +A+ +CN T +   + ED+ A CV+ +A  ++   +RERD+I+A V +M+TR+AG+FCTGTGRFQTP++ +F W+GR+V+VLA+T N++VFHLPAFLD S T  L+  AP NGTR++++  NPK+ FD SL   Q W + FV +QLG  G M+D   ++E L IFRY++K+ HAPPCDGICQ L L  ++YAATL++YPQHS Q  ++  AW FTTE+  T IGFTSQGNDAV+FLYKNP VGY PALLPQLIPC  M KEMFV+S WIRR         +G     V DEL
Sbjct:    9 LLFCSLSRTVEARGCQVRNHAGRPVDFYWMDVVNWGTYITQTPVPMPNETSFALKTYESHRFFVAWGDEAGEVQSWDPNSIPLNAQFVHRGYDQVVTALVDKNGQLYLQDWDVHEWGMDRLVQAIEQCNLTTSGNVEKEDAQARCVMKQANTIISRFKRERDSIKAQVDKMQTRMAGSFCTGTGRFQTPARRTFEWEGRQVNVLADTGNVSVFHLPAFLDVSGTTNLITGAPPNGTRYLEVFPNPKMKFDASLVEAQAWGRAFVQSQLG--GSMQDKTSDKEPLRIFRYDKKEFHAPPCDGICQKLLLPSAEYAATLIMYPQHSKQADRDRTAWYFTTEDANTDIGFTSQGNDAVLFLYKNPTVGYAPALLPQLIPCISMSKEMFVSSTWIRRPVDEKEKRAEGSSNSRVEDEL 420
The following BLAST results are available for this feature:
BLAST of NO02G00910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30566.12.100e-14559.42hypothetical protein Naga_100033g28 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006690NSK006690Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00910.1NO02G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573728gene_668Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100033g28gene101Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00910.1NO02G00910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00910 ID=NO02G00910|Name=NO02G00910|organism=Nannochloropsis oceanica|type=gene|length=1373bp
TCCCGAACACATGCTCTTAGGTATCACTTAACGCCCGTTCTACCCCTCGC
CCGACAACAGGCCCATAGGCATTCAAACCTCACACCAACATGCCTCGTGG
CACCGAGCTCCTGGCCTTGCCCCTTGTCTTCCTTCTCCTCCCCTACCTCA
CTCATGGTCGTGCATGCCAAGTCCGCAATTATGCCGGGCGTCCCGTGAAC
TTCTACTGGATGGACGTGGTCAACTGGGGTAACTATATCTCCCAGACGAA
AGTCCCCTTGCCGCACGCCACCTCTACCCCACTCAAGACCTATGAGACGC
ACCGCTTCTTCGCTGCATTTGCAGACGAAGCCAGTGAGGTTCCGTCTTGG
GACCCGGATAGCATCCCGTTGAACGCACAGTTTGTGCATAGAGGGTTCGA
TCAAGTGGTGACGGCCTTGGTGAACGAGGATGGACAGCTTTACCTCGATG
ATTGGGACATCCACGAAGGGGAGATGGCGCGGTTGGCGCGGGCTGTCAGT
AAATGCAACGAGACAGCTACTGCAGATTATGAAGACTCTCATGCGGCCTG
TGTCCTTGCCGAGGCCGGTGTGCTTCTTCAAAGCTTGGAACGCGAACGAG
ATAACATCGAGGCATTGGTCACCCGGATGGAAACTCGCCTCGCGGGGGCT
TTCTGCACAGGAACGGGACGTTTTCAGACCCCAAGTAAACATAGTTTTCT
ATGGCAAGGGCGTAAAGTAGACGTACTAGCAGAGACAAACAACCTCACTG
TCTTTCACCTCCCTGCCTTCCTTGACGCGTCCGCCACTGAGACGCTGCTT
CTTAGTGCGCCTGCGAACGGCACCCGGCACGTGGACATCCACACCAACCC
CAAGCTAAGTTTCGATGTCTCCTTAGCTGCCCGCCAGGAATGGGCACAGG
GCTTTGTCAGTGCTCAGCTAGGCGGGAAAGGAGGGATGGAGGATGGTAAC
AAGGAGGAAGAGGCTCTCCACATCTTCAGGTACAACCAAAAGCAAGTCCA
TGCCCCTCCTTGTGATGGTATCTGCCAAAGCCTGTCATTGCATCCTAGCC
AATATGCAGCCACCCTCCTCCTGTACCCTCAGCACTCCGATCAGGAAACT
AAAGAGATGGCGGCGTGGTTGTTCACAACGGAGGAGGAGGGGACACAGAT
TGGATTCACCTCTCAAGGGAACGACGCCGTTATCTTCCTGTACAAAAATC
CGGAGGTGGGATACATGCCTGCTCTCCTCCCACAATTAATCCCATGCCCG
GGGATGCCAAAGGAGATGTTTGTGGCTTCGCAATGGATTCGGCGGGTTGG
GGGACAGGGGGGGGAGAGAGGGTCTGTAGGGGATGAGCTGTGAAGAGGGA
GAGAGGTGGATTGCACAAAGAAA
back to top

protein sequence of NO02G00910.1

>NO02G00910.1-protein ID=NO02G00910.1-protein|Name=NO02G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MPRGTELLALPLVFLLLPYLTHGRACQVRNYAGRPVNFYWMDVVNWGNYI
SQTKVPLPHATSTPLKTYETHRFFAAFADEASEVPSWDPDSIPLNAQFVH
RGFDQVVTALVNEDGQLYLDDWDIHEGEMARLARAVSKCNETATADYEDS
HAACVLAEAGVLLQSLERERDNIEALVTRMETRLAGAFCTGTGRFQTPSK
HSFLWQGRKVDVLAETNNLTVFHLPAFLDASATETLLLSAPANGTRHVDI
HTNPKLSFDVSLAARQEWAQGFVSAQLGGKGGMEDGNKEEEALHIFRYNQ
KQVHAPPCDGICQSLSLHPSQYAATLLLYPQHSDQETKEMAAWLFTTEEE
GTQIGFTSQGNDAVIFLYKNPEVGYMPALLPQLIPCPGMPKEMFVASQWI
RRVGGQGGERGSVGDEL*
back to top
Synonyms
Publications