NO02G00910.1, NO02G00910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00910.1
Unique NameNO02G00910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1373
Alignment locationchr2:292032..293404 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:292032..293404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G00910.1 vs.
Match: EWM30566.1 (hypothetical protein Naga_100033g28 [Nannochloropsis gaditana])

HSP 1 Score: 525.4 bits (1352), Expect = 1.600e-145
Identity = 246/414 (59.42%), Postives = 310/414 (74.88%), Query Frame = 0
Query:   12 LVFLLLPYLTHGRACQVRNYAGRPVNFYWMDVVNWGNYISQTKVPLPHATSTPLKTYETHRFFAAFADEASEVPSWDPDSIPLNAQFVHRGFDQVVTALVNEDGQLYLDDWDIHEGEMARLARAVSKCNETATADYE--DSHAACVLAEAGVLLQSLERERDNIEALVTRMETRLAGAFCTGTGRFQTPSKHSFLWQGRKVDVLAETNNLTVFHLPAFLDASATETLLLSAPANGTRHVDIHTNPKLSFDVSLAARQEWAQGFVSAQLGGKGGMEDGNKEEEALHIFRYNQKQVHAPPCDGICQSLSLHPSQYAATLLLYPQHSDQETKEMAAWLFTTEEEGTQIGFTSQGNDAVIFLYKNPEVGYMPALLPQLIPCPGMPKEMFVASQWIRR------VGGQGGERGSVGDEL 418
            L+F  L      R CQVRN+AGRPV+FYWMDVVNWG YI+QT VP+P+ TS  LKTYE+HRFF A+ DEA EV SWDP+SIPLNAQFVHRG+DQVVTALV+++GQLYL DWD+HE  M RL +A+ +CN T + + E  D+ A CV+ +A  ++   +RERD+I+A V +M+TR+AG+FCTGTGRFQTP++ +F W+GR+V+VLA+T N++VFHLPAFLD S T  L+  AP NGTR++++  NPK+ FD SL   Q W + FV +QLGG   M+D   ++E L IFRY++K+ HAPPCDGICQ L L  ++YAATL++YPQHS Q  ++  AW FTTE+  T IGFTSQGNDAV+FLYKNP VGY PALLPQLIPC  M KEMFV+S WIRR         +G     V DEL
Sbjct:    9 LLFCSLSRTVEARGCQVRNHAGRPVDFYWMDVVNWGTYITQTPVPMPNETSFALKTYESHRFFVAWGDEAGEVQSWDPNSIPLNAQFVHRGYDQVVTALVDKNGQLYLQDWDVHEWGMDRLVQAIEQCNLTTSGNVEKEDAQARCVMKQANTIISRFKRERDSIKAQVDKMQTRMAGSFCTGTGRFQTPARRTFEWEGRQVNVLADTGNVSVFHLPAFLDVSGTTNLITGAPPNGTRYLEVFPNPKMKFDASLVEAQAWGRAFVQSQLGGS--MQDKTSDKEPLRIFRYDKKEFHAPPCDGICQKLLLPSAEYAATLIMYPQHSKQADRDRTAWYFTTEDANTDIGFTSQGNDAVLFLYKNPTVGYAPALLPQLIPCISMSKEMFVSSTWIRRPVDEKEKRAEGSSNSRVEDEL 420          
The following BLAST results are available for this feature:
BLAST of NO02G00910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30566.11.600e-14559.42hypothetical protein Naga_100033g28 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00910NO02G00910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00910.1NO02G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00910.1.cds1NO02G00910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00910.1 ID=NO02G00910.1|Name=NO02G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp
TCCCGAACACATGCTCTTAGGTATCACTTAACGCCCGTTCTACCCCTCGC
CCGACAACAGGCCCATAGGCATTCAAACCTCACACCAACATGCCTCGTGG
CACCGAGCTCCTGGCCTTGCCCCTTGTCTTCCTTCTCCTCCCCTACCTCA
CTCATGGTCGTGCATGCCAAGTCCGCAATTATGCCGGGCGTCCCGTGAAC
TTCTACTGGATGGACGTGGTCAACTGGGGTAACTATATCTCCCAGACGAA
AGTCCCCTTGCCGCACGCCACCTCTACCCCACTCAAGACCTATGAGACGC
ACCGCTTCTTCGCTGCATTTGCAGACGAAGCCAGTGAGGTTCCGTCTTGG
GACCCGGATAGCATCCCGTTGAACGCACAGTTTGTGCATAGAGGGTTCGA
TCAAGTGGTGACGGCCTTGGTGAACGAGGATGGACAGCTTTACCTCGATG
ATTGGGACATCCACGAAGGGGAGATGGCGCGGTTGGCGCGGGCTGTCAGT
AAATGCAACGAGACAGCTACTGCAGATTATGAAGACTCTCATGCGGCCTG
TGTCCTTGCCGAGGCCGGTGTGCTTCTTCAAAGCTTGGAACGCGAACGAG
ATAACATCGAGGCATTGGTCACCCGGATGGAAACTCGCCTCGCGGGGGCT
TTCTGCACAGGAACGGGACGTTTTCAGACCCCAAGTAAACATAGTTTTCT
ATGGCAAGGGCGTAAAGTAGACGTACTAGCAGAGACAAACAACCTCACTG
TCTTTCACCTCCCTGCCTTCCTTGACGCGTCCGCCACTGAGACGCTGCTT
CTTAGTGCGCCTGCGAACGGCACCCGGCACGTGGACATCCACACCAACCC
CAAGCTAAGTTTCGATGTCTCCTTAGCTGCCCGCCAGGAATGGGCACAGG
GCTTTGTCAGTGCTCAGCTAGGCGGGAAAGGAGGGATGGAGGATGGTAAC
AAGGAGGAAGAGGCTCTCCACATCTTCAGGTACAACCAAAAGCAAGTCCA
TGCCCCTCCTTGTGATGGTATCTGCCAAAGCCTGTCATTGCATCCTAGCC
AATATGCAGCCACCCTCCTCCTGTACCCTCAGCACTCCGATCAGGAAACT
AAAGAGATGGCGGCGTGGTTGTTCACAACGGAGGAGGAGGGGACACAGAT
TGGATTCACCTCTCAAGGGAACGACGCCGTTATCTTCCTGTACAAAAATC
CGGAGGTGGGATACATGCCTGCTCTCCTCCCACAATTAATCCCATGCCCG
GGGATGCCAAAGGAGATGTTTGTGGCTTCGCAATGGATTCGGCGGGTTGG
GGGACAGGGGGGGGAGAGAGGGTCTGTAGGGGATGAGCTGTGAAGAGGGA
GAGAGGTGGATTGCACAAAGAAA
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protein sequence of NO02G00910.1

>NO02G00910.1-protein ID=NO02G00910.1-protein|Name=NO02G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MPRGTELLALPLVFLLLPYLTHGRACQVRNYAGRPVNFYWMDVVNWGNYI
SQTKVPLPHATSTPLKTYETHRFFAAFADEASEVPSWDPDSIPLNAQFVH
RGFDQVVTALVNEDGQLYLDDWDIHEGEMARLARAVSKCNETATADYEDS
HAACVLAEAGVLLQSLERERDNIEALVTRMETRLAGAFCTGTGRFQTPSK
HSFLWQGRKVDVLAETNNLTVFHLPAFLDASATETLLLSAPANGTRHVDI
HTNPKLSFDVSLAARQEWAQGFVSAQLGGKGGMEDGNKEEEALHIFRYNQ
KQVHAPPCDGICQSLSLHPSQYAATLLLYPQHSDQETKEMAAWLFTTEEE
GTQIGFTSQGNDAVIFLYKNPEVGYMPALLPQLIPCPGMPKEMFVASQWI
RRVGGQGGERGSVGDEL*
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mRNA from alignment at chr2:292032..293404+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00910.1 ID=NO02G00910.1|Name=NO02G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp|location=Sequence derived from alignment at chr2:292032..293404+ (Nannochloropsis oceanica)
TCCCGAACACATGCTCTTAGGTATCACTTAACGCCCGTTCTACCCCTCGC CCGACAACAGGCCCATAGGCATTCAAACCTCACACCAACATGCCTCGTGG CACCGAGCTCCTGGCCTTGCCCCTTGTCTTCCTTCTCCTCCCCTACCTCA CTCATGGTCGTGCATGCCAAGTCCGCAATTATGCCGGGCGTCCCGTGAAC TTCTACTGGATGGACGTGGTCAACTGGGGTAACTATATCTCCCAGACGAA AGTCCCCTTGCCGCACGCCACCTCTACCCCACTCAAGACCTATGAGACGC ACCGCTTCTTCGCTGCATTTGCAGACGAAGCCAGTGAGGTTCCGTCTTGG GACCCGGATAGCATCCCGTTGAACGCACAGTTTGTGCATAGAGGGTTCGA TCAAGTGGTGACGGCCTTGGTGAACGAGGATGGACAGCTTTACCTCGATG ATTGGGACATCCACGAAGGGGAGATGGCGCGGTTGGCGCGGGCTGTCAGT AAATGCAACGAGACAGCTACTGCAGATTATGAAGACTCTCATGCGGCCTG TGTCCTTGCCGAGGCCGGTGTGCTTCTTCAAAGCTTGGAACGCGAACGAG ATAACATCGAGGCATTGGTCACCCGGATGGAAACTCGCCTCGCGGGGGCT TTCTGCACAGGAACGGGACGTTTTCAGACCCCAAGTAAACATAGTTTTCT ATGGCAAGGGCGTAAAGTAGACGTACTAGCAGAGACAAACAACCTCACTG TCTTTCACCTCCCTGCCTTCCTTGACGCGTCCGCCACTGAGACGCTGCTT CTTAGTGCGCCTGCGAACGGCACCCGGCACGTGGACATCCACACCAACCC CAAGCTAAGTTTCGATGTCTCCTTAGCTGCCCGCCAGGAATGGGCACAGG GCTTTGTCAGTGCTCAGCTAGGCGGGAAAGGAGGGATGGAGGATGGTAAC AAGGAGGAAGAGGCTCTCCACATCTTCAGGTACAACCAAAAGCAAGTCCA TGCCCCTCCTTGTGATGGTATCTGCCAAAGCCTGTCATTGCATCCTAGCC AATATGCAGCCACCCTCCTCCTGTACCCTCAGCACTCCGATCAGGAAACT AAAGAGATGGCGGCGTGGTTGTTCACAACGGAGGAGGAGGGGACACAGAT TGGATTCACCTCTCAAGGGAACGACGCCGTTATCTTCCTGTACAAAAATC CGGAGGTGGGATACATGCCTGCTCTCCTCCCACAATTAATCCCATGCCCG GGGATGCCAAAGGAGATGTTTGTGGCTTCGCAATGGATTCGGCGGGTTGG GGGACAGGGGGGGGAGAGAGGGTCTGTAGGGGATGAGCTGTGAAGAGGGA GAGAGGTGGATTGCACAAAGAAA
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Coding sequence (CDS) from alignment at chr2:292032..293404+

>NO02G00910.1 ID=NO02G00910.1|Name=NO02G00910.1|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at chr2:292032..293404+ (Nannochloropsis oceanica)
ATGCCTCGTGGCACCGAGCTCCTGGCCTTGCCCCTTGTCTTCCTTCTCCT
CCCCTACCTCACTCATGGTCGTGCATGCCAAGTCCGCAATTATGCCGGGC
GTCCCGTGAACTTCTACTGGATGGACGTGGTCAACTGGGGTAACTATATC
TCCCAGACGAAAGTCCCCTTGCCGCACGCCACCTCTACCCCACTCAAGAC
CTATGAGACGCACCGCTTCTTCGCTGCATTTGCAGACGAAGCCAGTGAGG
TTCCGTCTTGGGACCCGGATAGCATCCCGTTGAACGCACAGTTTGTGCAT
AGAGGGTTCGATCAAGTGGTGACGGCCTTGGTGAACGAGGATGGACAGCT
TTACCTCGATGATTGGGACATCCACGAAGGGGAGATGGCGCGGTTGGCGC
GGGCTGTCAGTAAATGCAACGAGACAGCTACTGCAGATTATGAAGACTCT
CATGCGGCCTGTGTCCTTGCCGAGGCCGGTGTGCTTCTTCAAAGCTTGGA
ACGCGAACGAGATAACATCGAGGCATTGGTCACCCGGATGGAAACTCGCC
TCGCGGGGGCTTTCTGCACAGGAACGGGACGTTTTCAGACCCCAAGTAAA
CATAGTTTTCTATGGCAAGGGCGTAAAGTAGACGTACTAGCAGAGACAAA
CAACCTCACTGTCTTTCACCTCCCTGCCTTCCTTGACGCGTCCGCCACTG
AGACGCTGCTTCTTAGTGCGCCTGCGAACGGCACCCGGCACGTGGACATC
CACACCAACCCCAAGCTAAGTTTCGATGTCTCCTTAGCTGCCCGCCAGGA
ATGGGCACAGGGCTTTGTCAGTGCTCAGCTAGGCGGGAAAGGAGGGATGG
AGGATGGTAACAAGGAGGAAGAGGCTCTCCACATCTTCAGGTACAACCAA
AAGCAAGTCCATGCCCCTCCTTGTGATGGTATCTGCCAAAGCCTGTCATT
GCATCCTAGCCAATATGCAGCCACCCTCCTCCTGTACCCTCAGCACTCCG
ATCAGGAAACTAAAGAGATGGCGGCGTGGTTGTTCACAACGGAGGAGGAG
GGGACACAGATTGGATTCACCTCTCAAGGGAACGACGCCGTTATCTTCCT
GTACAAAAATCCGGAGGTGGGATACATGCCTGCTCTCCTCCCACAATTAA
TCCCATGCCCGGGGATGCCAAAGGAGATGTTTGTGGCTTCGCAATGGATT
CGGCGGGTTGGGGGACAGGGGGGGGAGAGAGGGTCTGTAGGGGATGAGCT
GTGA
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Synonyms
Publications