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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:292032..293404 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00910.1 vs.
Match: EWM30566.1 (hypothetical protein Naga_100033g28 [Nannochloropsis gaditana]) HSP 1 Score: 525.4 bits (1352), Expect = 1.600e-145 Identity = 246/414 (59.42%), Postives = 310/414 (74.88%), Query Frame = 0
Query: 12 LVFLLLPYLTHGRACQVRNYAGRPVNFYWMDVVNWGNYISQTKVPLPHATSTPLKTYETHRFFAAFADEASEVPSWDPDSIPLNAQFVHRGFDQVVTALVNEDGQLYLDDWDIHEGEMARLARAVSKCNETATADYE--DSHAACVLAEAGVLLQSLERERDNIEALVTRMETRLAGAFCTGTGRFQTPSKHSFLWQGRKVDVLAETNNLTVFHLPAFLDASATETLLLSAPANGTRHVDIHTNPKLSFDVSLAARQEWAQGFVSAQLGGKGGMEDGNKEEEALHIFRYNQKQVHAPPCDGICQSLSLHPSQYAATLLLYPQHSDQETKEMAAWLFTTEEEGTQIGFTSQGNDAVIFLYKNPEVGYMPALLPQLIPCPGMPKEMFVASQWIRR------VGGQGGERGSVGDEL 418
L+F L R CQVRN+AGRPV+FYWMDVVNWG YI+QT VP+P+ TS LKTYE+HRFF A+ DEA EV SWDP+SIPLNAQFVHRG+DQVVTALV+++GQLYL DWD+HE M RL +A+ +CN T + + E D+ A CV+ +A ++ +RERD+I+A V +M+TR+AG+FCTGTGRFQTP++ +F W+GR+V+VLA+T N++VFHLPAFLD S T L+ AP NGTR++++ NPK+ FD SL Q W + FV +QLGG M+D ++E L IFRY++K+ HAPPCDGICQ L L ++YAATL++YPQHS Q ++ AW FTTE+ T IGFTSQGNDAV+FLYKNP VGY PALLPQLIPC M KEMFV+S WIRR +G V DEL
Sbjct: 9 LLFCSLSRTVEARGCQVRNHAGRPVDFYWMDVVNWGTYITQTPVPMPNETSFALKTYESHRFFVAWGDEAGEVQSWDPNSIPLNAQFVHRGYDQVVTALVDKNGQLYLQDWDVHEWGMDRLVQAIEQCNLTTSGNVEKEDAQARCVMKQANTIISRFKRERDSIKAQVDKMQTRMAGSFCTGTGRFQTPARRTFEWEGRQVNVLADTGNVSVFHLPAFLDVSGTTNLITGAPPNGTRYLEVFPNPKMKFDASLVEAQAWGRAFVQSQLGGS--MQDKTSDKEPLRIFRYDKKEFHAPPCDGICQKLLLPSAEYAATLIMYPQHSKQADRDRTAWYFTTEDANTDIGFTSQGNDAVLFLYKNPTVGYAPALLPQLIPCISMSKEMFVSSTWIRRPVDEKEKRAEGSSNSRVEDEL 420
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00910.1 ID=NO02G00910.1|Name=NO02G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp TCCCGAACACATGCTCTTAGGTATCACTTAACGCCCGTTCTACCCCTCGC CCGACAACAGGCCCATAGGCATTCAAACCTCACACCAACATGCCTCGTGG CACCGAGCTCCTGGCCTTGCCCCTTGTCTTCCTTCTCCTCCCCTACCTCA CTCATGGTCGTGCATGCCAAGTCCGCAATTATGCCGGGCGTCCCGTGAAC TTCTACTGGATGGACGTGGTCAACTGGGGTAACTATATCTCCCAGACGAA AGTCCCCTTGCCGCACGCCACCTCTACCCCACTCAAGACCTATGAGACGC ACCGCTTCTTCGCTGCATTTGCAGACGAAGCCAGTGAGGTTCCGTCTTGG GACCCGGATAGCATCCCGTTGAACGCACAGTTTGTGCATAGAGGGTTCGA TCAAGTGGTGACGGCCTTGGTGAACGAGGATGGACAGCTTTACCTCGATG ATTGGGACATCCACGAAGGGGAGATGGCGCGGTTGGCGCGGGCTGTCAGT AAATGCAACGAGACAGCTACTGCAGATTATGAAGACTCTCATGCGGCCTG TGTCCTTGCCGAGGCCGGTGTGCTTCTTCAAAGCTTGGAACGCGAACGAG ATAACATCGAGGCATTGGTCACCCGGATGGAAACTCGCCTCGCGGGGGCT TTCTGCACAGGAACGGGACGTTTTCAGACCCCAAGTAAACATAGTTTTCT ATGGCAAGGGCGTAAAGTAGACGTACTAGCAGAGACAAACAACCTCACTG TCTTTCACCTCCCTGCCTTCCTTGACGCGTCCGCCACTGAGACGCTGCTT CTTAGTGCGCCTGCGAACGGCACCCGGCACGTGGACATCCACACCAACCC CAAGCTAAGTTTCGATGTCTCCTTAGCTGCCCGCCAGGAATGGGCACAGG GCTTTGTCAGTGCTCAGCTAGGCGGGAAAGGAGGGATGGAGGATGGTAAC AAGGAGGAAGAGGCTCTCCACATCTTCAGGTACAACCAAAAGCAAGTCCA TGCCCCTCCTTGTGATGGTATCTGCCAAAGCCTGTCATTGCATCCTAGCC AATATGCAGCCACCCTCCTCCTGTACCCTCAGCACTCCGATCAGGAAACT AAAGAGATGGCGGCGTGGTTGTTCACAACGGAGGAGGAGGGGACACAGAT TGGATTCACCTCTCAAGGGAACGACGCCGTTATCTTCCTGTACAAAAATC CGGAGGTGGGATACATGCCTGCTCTCCTCCCACAATTAATCCCATGCCCG GGGATGCCAAAGGAGATGTTTGTGGCTTCGCAATGGATTCGGCGGGTTGG GGGACAGGGGGGGGAGAGAGGGTCTGTAGGGGATGAGCTGTGAAGAGGGA GAGAGGTGGATTGCACAAAGAAA back to topprotein sequence of NO02G00910.1 >NO02G00910.1-protein ID=NO02G00910.1-protein|Name=NO02G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp MPRGTELLALPLVFLLLPYLTHGRACQVRNYAGRPVNFYWMDVVNWGNYI SQTKVPLPHATSTPLKTYETHRFFAAFADEASEVPSWDPDSIPLNAQFVH RGFDQVVTALVNEDGQLYLDDWDIHEGEMARLARAVSKCNETATADYEDS HAACVLAEAGVLLQSLERERDNIEALVTRMETRLAGAFCTGTGRFQTPSK HSFLWQGRKVDVLAETNNLTVFHLPAFLDASATETLLLSAPANGTRHVDI HTNPKLSFDVSLAARQEWAQGFVSAQLGGKGGMEDGNKEEEALHIFRYNQ KQVHAPPCDGICQSLSLHPSQYAATLLLYPQHSDQETKEMAAWLFTTEEE GTQIGFTSQGNDAVIFLYKNPEVGYMPALLPQLIPCPGMPKEMFVASQWI RRVGGQGGERGSVGDEL* back to topmRNA from alignment at chr2:292032..293404+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00910.1 ID=NO02G00910.1|Name=NO02G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp|location=Sequence derived from alignment at chr2:292032..293404+ (Nannochloropsis oceanica) TCCCGAACACATGCTCTTAGGTATCACTTAACGCCCGTTCTACCCCTCGC
CCGACAACAGGCCCATAGGCATTCAAACCTCACACCAACATGCCTCGTGG
CACCGAGCTCCTGGCCTTGCCCCTTGTCTTCCTTCTCCTCCCCTACCTCA
CTCATGGTCGTGCATGCCAAGTCCGCAATTATGCCGGGCGTCCCGTGAAC
TTCTACTGGATGGACGTGGTCAACTGGGGTAACTATATCTCCCAGACGAA
AGTCCCCTTGCCGCACGCCACCTCTACCCCACTCAAGACCTATGAGACGC
ACCGCTTCTTCGCTGCATTTGCAGACGAAGCCAGTGAGGTTCCGTCTTGG
GACCCGGATAGCATCCCGTTGAACGCACAGTTTGTGCATAGAGGGTTCGA
TCAAGTGGTGACGGCCTTGGTGAACGAGGATGGACAGCTTTACCTCGATG
ATTGGGACATCCACGAAGGGGAGATGGCGCGGTTGGCGCGGGCTGTCAGT
AAATGCAACGAGACAGCTACTGCAGATTATGAAGACTCTCATGCGGCCTG
TGTCCTTGCCGAGGCCGGTGTGCTTCTTCAAAGCTTGGAACGCGAACGAG
ATAACATCGAGGCATTGGTCACCCGGATGGAAACTCGCCTCGCGGGGGCT
TTCTGCACAGGAACGGGACGTTTTCAGACCCCAAGTAAACATAGTTTTCT
ATGGCAAGGGCGTAAAGTAGACGTACTAGCAGAGACAAACAACCTCACTG
TCTTTCACCTCCCTGCCTTCCTTGACGCGTCCGCCACTGAGACGCTGCTT
CTTAGTGCGCCTGCGAACGGCACCCGGCACGTGGACATCCACACCAACCC
CAAGCTAAGTTTCGATGTCTCCTTAGCTGCCCGCCAGGAATGGGCACAGG
GCTTTGTCAGTGCTCAGCTAGGCGGGAAAGGAGGGATGGAGGATGGTAAC
AAGGAGGAAGAGGCTCTCCACATCTTCAGGTACAACCAAAAGCAAGTCCA
TGCCCCTCCTTGTGATGGTATCTGCCAAAGCCTGTCATTGCATCCTAGCC
AATATGCAGCCACCCTCCTCCTGTACCCTCAGCACTCCGATCAGGAAACT
AAAGAGATGGCGGCGTGGTTGTTCACAACGGAGGAGGAGGGGACACAGAT
TGGATTCACCTCTCAAGGGAACGACGCCGTTATCTTCCTGTACAAAAATC
CGGAGGTGGGATACATGCCTGCTCTCCTCCCACAATTAATCCCATGCCCG
GGGATGCCAAAGGAGATGTTTGTGGCTTCGCAATGGATTCGGCGGGTTGG
GGGACAGGGGGGGGAGAGAGGGTCTGTAGGGGATGAGCTGTGAAGAGGGA
GAGAGGTGGATTGCACAAAGAAA back to topCoding sequence (CDS) from alignment at chr2:292032..293404+ >NO02G00910.1 ID=NO02G00910.1|Name=NO02G00910.1|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at chr2:292032..293404+ (Nannochloropsis oceanica) ATGCCTCGTGGCACCGAGCTCCTGGCCTTGCCCCTTGTCTTCCTTCTCCT CCCCTACCTCACTCATGGTCGTGCATGCCAAGTCCGCAATTATGCCGGGC GTCCCGTGAACTTCTACTGGATGGACGTGGTCAACTGGGGTAACTATATC TCCCAGACGAAAGTCCCCTTGCCGCACGCCACCTCTACCCCACTCAAGAC CTATGAGACGCACCGCTTCTTCGCTGCATTTGCAGACGAAGCCAGTGAGG TTCCGTCTTGGGACCCGGATAGCATCCCGTTGAACGCACAGTTTGTGCAT AGAGGGTTCGATCAAGTGGTGACGGCCTTGGTGAACGAGGATGGACAGCT TTACCTCGATGATTGGGACATCCACGAAGGGGAGATGGCGCGGTTGGCGC GGGCTGTCAGTAAATGCAACGAGACAGCTACTGCAGATTATGAAGACTCT CATGCGGCCTGTGTCCTTGCCGAGGCCGGTGTGCTTCTTCAAAGCTTGGA ACGCGAACGAGATAACATCGAGGCATTGGTCACCCGGATGGAAACTCGCC TCGCGGGGGCTTTCTGCACAGGAACGGGACGTTTTCAGACCCCAAGTAAA CATAGTTTTCTATGGCAAGGGCGTAAAGTAGACGTACTAGCAGAGACAAA CAACCTCACTGTCTTTCACCTCCCTGCCTTCCTTGACGCGTCCGCCACTG AGACGCTGCTTCTTAGTGCGCCTGCGAACGGCACCCGGCACGTGGACATC CACACCAACCCCAAGCTAAGTTTCGATGTCTCCTTAGCTGCCCGCCAGGA ATGGGCACAGGGCTTTGTCAGTGCTCAGCTAGGCGGGAAAGGAGGGATGG AGGATGGTAACAAGGAGGAAGAGGCTCTCCACATCTTCAGGTACAACCAA AAGCAAGTCCATGCCCCTCCTTGTGATGGTATCTGCCAAAGCCTGTCATT GCATCCTAGCCAATATGCAGCCACCCTCCTCCTGTACCCTCAGCACTCCG ATCAGGAAACTAAAGAGATGGCGGCGTGGTTGTTCACAACGGAGGAGGAG GGGACACAGATTGGATTCACCTCTCAAGGGAACGACGCCGTTATCTTCCT GTACAAAAATCCGGAGGTGGGATACATGCCTGCTCTCCTCCCACAATTAA TCCCATGCCCGGGGATGCCAAAGGAGATGTTTGTGGCTTCGCAATGGATT CGGCGGGTTGGGGGACAGGGGGGGGAGAGAGGGTCTGTAGGGGATGAGCT GTGA back to top
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