NO02G00900, NO02G00900 (gene) Nannochloropsis oceanica

Overview
NameNO02G00900
Unique NameNO02G00900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1354
Alignment locationchr2:290451..291804 -

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Properties
Property NameValue
DescriptionER membrane protein complex subunit 7 homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:290451..291804 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
GO:0030246carbohydrate binding
Vocabulary: INTERPRO
TermDefinition
IPR013784Carb-bd-like_fold
IPR019008DUF2012
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO02G00900 vs. NCBI_GenBank
Match: CBJ29550.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 130.2 bits (326), Expect = 8.900e-27
Identity = 69/161 (42.86%), Postives = 107/161 (66.46%), Query Frame = 0 
Query:   68 TKVILSGGMYATLTTADGSFRFADVPAGTYLLDVLSPEYYFSQIKISVRPDMEDDAGKILCLEYKYPGAPKIKASYPLLLHAHSEYDYFEKRDAWASLRAQLMSPMTWMLFVSVAAAFFLPKAMDSMS-------EDEKKALEEQMKTTNPTAMLQDLMGG 222
            TKV+L+GG +++LT  DGSF F DV AG YLL+VLSP ++FS +KI V     DD   I+ +EYKYPGAP+ +A +PLLL AH+++++FEKR+    +     SPMT ++ +S+A  FFLPK M ++        +D++KA++E     + +++L + + G
Sbjct:   10 TKVVLNGGQHSSLTARDGSFAFRDVAAGVYLLEVLSPNFHFSAMKIKV-----DDMTGIIAIEYKYPGAPRKEAIHPLLLTAHTKWNHFEKREG-MKVGGMFKSPMTIIMVLSMAMMFFLPKMMANLDPEQLEEIKDQQKAVQESTANLSFSSLLSNALAG 164
[Close]
BLAST of NO02G00900 vs. NCBI_GenBank
Match: XP_009530827.1 (hypothetical protein PHYSODRAFT_303013 [Phytophthora sojae] >EGZ13398.1 hypothetical protein PHYSODRAFT_303013 [Phytophthora sojae])

HSP 1 Score: 124.0 bits (310), Expect = 6.400e-25
Identity = 72/185 (38.92%), Postives = 105/185 (56.76%), Query Frame = 0 
Query:   39 LLLVLTLPSINALPLEGRI--LLVTNEAPAPTKVILSGGMYATLTTADGSFRFADVPAGTYLLDVLSPEYYFSQIKISVRPDMEDDAGKILCLEYKYPGAPKIKASYPLLLHAHSEYDYFEKRDAWASLRAQLMSPMTWMLFVSVAAAFFLPKAMDSMSEDEKKALEEQMKTTNPTAMLQDLMGG 222
            LL +L    + A  + G +  L    E   P KV L+GG       +DGSF F DV  G Y++D+ S ++ FSQ K+ V  D     G I  LEYKYPGAPK +ASYPL+  A  E DYFE+R+ + +L   +MSP    + V +   + LPK  + M  +E K  +E+M +T+P+++L  ++GG
Sbjct:    9 LLALLLAACVQAFEISGTVYPLGSVTEQVEPLKVQLNGGEQTVFVRSDGSFLFRDVGPGRYVVDIPSTQFLFSQYKVDVGAD-----GLIRALEYKYPGAPKARASYPLVAEAVKELDYFEQREKF-NLLGMIMSPSFLTIIVPIGLLYLLPKLSEGMDPEEMKKAQEEMGSTDPSSLLAGMLGG 187
[Close]
BLAST of NO02G00900 vs. NCBI_GenBank
Match: XP_002903087.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55511.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 117.9 bits (294), Expect = 4.600e-23
Identity = 69/190 (36.32%), Postives = 107/190 (56.32%), Query Frame = 0 
Query:   34 LLLPFLLLVLTLPSINALPLEGRILL--VTNEAPAPTKVILSGGMYATLTTADGSFRFADVPAGTYLLDVLSPEYYFSQIKISVRPDMEDDAGKILCLEYKYPGAPKIKASYPLLLHAHSEYDYFEKRDAWASLRAQLMSPMTWMLFVSVAAAFFLPKAMDSMSEDEKKALEEQMKTTNPTAMLQDLMGG 222
            ++L  L+ +L   S  A  + G +       E   P KV L+GG   T   ADG+F F D+  G Y++D+ S ++ FSQ K+ V  D     G I  LEYKYPGAPK++ASYPL+     + DYFE+R+ + +L   +M+P    + V +   + LPK  + M  +E K  +E+M  T+P+++L  ++GG
Sbjct:    1 MMLWALVALLLAASTQAFEISGTVYPQGSVTEKVEPLKVHLNGGEQTTFVRADGTFVFRDLEPGRYVVDIPSTQFLFSQYKVDVAAD-----GLIRALEYKYPGAPKMRASYPLIAEPVKQLDYFEQREKF-NLLGLIMNPSFLTIVVPIGLLYILPKLSEGMDPEEMKKAQEEMGATDPSSLLAGMLGG 184
[Close]
BLAST of NO02G00900 vs. NCBI_GenBank
Match: ETK78234.1 (hypothetical protein L915_15667 [Phytophthora parasitica] >ETL31669.1 hypothetical protein L916_15562 [Phytophthora parasitica] >ETO66789.1 hypothetical protein F444_16106 [Phytophthora parasitica P1976] >ETP07910.1 hypothetical protein F441_15950 [Phytophthora parasitica CJ01A1] >ETP35977.1 hypothetical protein F442_15974 [Phytophthora parasitica P10297])

HSP 1 Score: 116.7 bits (291), Expect = 1.000e-22
Identity = 68/192 (35.42%), Postives = 107/192 (55.73%), Query Frame = 0 
Query:   32 TSLLLPFLLLVLTLPSINALPLEGRILL--VTNEAPAPTKVILSGGMYATLTTADGSFRFADVPAGTYLLDVLSPEYYFSQIKISVRPDMEDDAGKILCLEYKYPGAPKIKASYPLLLHAHSEYDYFEKRDAWASLRAQLMSPMTWMLFVSVAAAFFLPKAMDSMSEDEKKALEEQMKTTNPTAMLQDLMGG 222
            T++ L  L+ +L   S  A  + G +       E   P KV L+GG       ADGSF F D+  G Y++D+ S ++ FSQ K+ V  D     G I  LEYKYPGAPK +A+YPL++    + DYFE+R+ + ++   +M+P    + V +   + LPK  + M  +E K  +E+M  T+P+++L  ++GG
Sbjct:    3 TTMSLWALVALLVATSTQAFEISGTVYPQGSVTEKVEPLKVQLNGGEQTAFVRADGSFLFRDLEPGRYVVDIPSTQFLFSQYKVDVAAD-----GLIRALEYKYPGAPKARATYPLIVEPVKQLDYFEQREKF-NILGLIMNPSFLTIVVPIGLLYILPKLSEGMDPEEMKKAQEEMGATDPSSLLAGMLGG 188
[Close]
BLAST of NO02G00900 vs. NCBI_GenBank
Match: XP_008911209.1 (hypothetical protein PPTG_15673 [Phytophthora parasitica INRA-310] >ETI38020.1 hypothetical protein F443_16121 [Phytophthora parasitica P1569] >ETL84899.1 hypothetical protein L917_15385 [Phytophthora parasitica] >ETM38082.1 hypothetical protein L914_15517 [Phytophthora parasitica] >ETN03436.1 hypothetical protein PPTG_15673 [Phytophthora parasitica INRA-310])

HSP 1 Score: 116.3 bits (290), Expect = 1.300e-22
Identity = 66/185 (35.68%), Postives = 103/185 (55.68%), Query Frame = 0 
Query:   39 LLLVLTLPSINALPLEGRILL--VTNEAPAPTKVILSGGMYATLTTADGSFRFADVPAGTYLLDVLSPEYYFSQIKISVRPDMEDDAGKILCLEYKYPGAPKIKASYPLLLHAHSEYDYFEKRDAWASLRAQLMSPMTWMLFVSVAAAFFLPKAMDSMSEDEKKALEEQMKTTNPTAMLQDLMGG 222
            L+ +L   S  A  + G +       E   P KV L+GG       ADGSF F D+  G Y++D+ S ++ FSQ K+ V  D     G I  LEYKYPGAPK +A+YPL++    + DYFE+R+ + ++   +M+P    + V +   + LPK  + M  +E K  +E+M  T+P+++L  ++GG
Sbjct:    9 LVALLVATSTQAFEISGTVYPQGSVTEKVEPLKVQLNGGEQTAFVRADGSFLFRDLEPGRYVVDIPSTQFLFSQYKVDVAAD-----GLIRALEYKYPGAPKARATYPLIVEPVKQLDYFEQREKF-NILGLIMNPSFLTIVVPIGLLYILPKLSEGMDPEEMKKAQEEMGATDPSSLLAGMLGG 187
[Close]
BLAST of NO02G00900 vs. NCBI_GenBank
Match: KUF76775.1 (ER membrane protein complex subunit 7 [Phytophthora nicotianae] >KUF95764.1 Ca2 :Cation Antiporter (CaCA) Family [Phytophthora nicotianae])

HSP 1 Score: 116.3 bits (290), Expect = 1.300e-22
Identity = 66/185 (35.68%), Postives = 103/185 (55.68%), Query Frame = 0 
Query:   39 LLLVLTLPSINALPLEGRILL--VTNEAPAPTKVILSGGMYATLTTADGSFRFADVPAGTYLLDVLSPEYYFSQIKISVRPDMEDDAGKILCLEYKYPGAPKIKASYPLLLHAHSEYDYFEKRDAWASLRAQLMSPMTWMLFVSVAAAFFLPKAMDSMSEDEKKALEEQMKTTNPTAMLQDLMGG 222
            L+ +L   S  A  + G +       E   P KV L+GG       ADGSF F D+  G Y++D+ S ++ FSQ K+ V  D     G I  LEYKYPGAPK +A+YPL++    + DYFE+R+ + ++   +M+P    + V +   + LPK  + M  +E K  +E+M  T+P+++L  ++GG
Sbjct:    8 LVALLVATSTQAFEISGTVYPQGSVTEKVEPLKVQLNGGEQTAFVRADGSFLFRDLEPGRYVVDIPSTQFLFSQYKVDVAAD-----GLIRALEYKYPGAPKARATYPLIVEPVKQLDYFEQREKF-NILGLIMNPSFLTIVVPIGLLYILPKLSEGMDPEEMKKAQEEMGATDPSSLLAGMLGG 186
[Close]
BLAST of NO02G00900 vs. NCBI_GenBank
Match: XP_009034766.1 (hypothetical protein AURANDRAFT_6595, partial [Aureococcus anophagefferens] >EGB10041.1 hypothetical protein AURANDRAFT_6595, partial [Aureococcus anophagefferens])

HSP 1 Score: 115.2 bits (287), Expect = 3.000e-22
Identity = 65/139 (46.76%), Postives = 85/139 (61.15%), Query Frame = 0 
Query:   68 TKVILSGGMYATLTTADGSFRFADVPAGTYLLDVLSPEYYFSQIKISVRPDMEDDAGKILCLEYKYPGAPKIKASYPLLLHAHSEYDYFEKRDAWASLRAQLMSPMTWMLFVSVAAAFFLPKAMDSMSEDEKKALEEQM 207
            T+V+L+GG Y T T  DG F F DV  G YLLDVLS +Y FSQ+K+++ P    +A  I CLEY+YPGA K   +YPL L AH +  YFE R+    L     +PM  ML  + A    +PK MD+M  +E K ++EQM
Sbjct:    6 TEVVLNGGEYRTYTRPDGGFVFHDVEPGVYLLDVLSVDYIFSQVKLNL-PKAGGEA--IRCLEYRYPGAAKQPMAYPLELAAHVKQQYFEVRET-PGLHTLFRNPMMLMLLFTGAVVVLMPKMMDNMDPEEMKKMQEQM 140
[Close]
BLAST of NO02G00900 vs. NCBI_GenBank
Match: POM68246.1 (Hypothetical protein PHPALM_15620 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 115.2 bits (287), Expect = 3.000e-22
Identity = 66/184 (35.87%), Postives = 104/184 (56.52%), Query Frame = 0 
Query:   40 LLVLTLPSINALPLEGRILL--VTNEAPAPTKVILSGGMYATLTTADGSFRFADVPAGTYLLDVLSPEYYFSQIKISVRPDMEDDAGKILCLEYKYPGAPKIKASYPLLLHAHSEYDYFEKRDAWASLRAQLMSPMTWMLFVSVAAAFFLPKAMDSMSEDEKKALEEQMKTTNPTAMLQDLMGG 222
            LL L     +A  + G +      +E   P KV L+GG   T   +DG+F F D+  G Y++D+ S ++ FSQ K+ V  D     G I  LEYKYPGAPK++A YPL +    + DYFE+R+ + +L   +M+P    + V +   + LPK  + M  +E K  +E+M +T+P+++L  ++GG
Sbjct:    9 LLALLATCAHAFEISGTVYPQGSVSEKVEPLKVQLNGGEQTTFVRSDGTFVFRDLGTGRYVVDIPSTQFLFSQYKVDVAAD-----GLIRALEYKYPGAPKMRADYPLNVEPVKQLDYFEQREKF-NLLGLIMNPSFLTIVVPIGLLYLLPKLSEGMDPEEMKKAQEEMGSTDPSSLLAGMLGG 186
[Close]
BLAST of NO02G00900 vs. NCBI_GenBank
Match: AIG55405.1 (secreted protein [Thraustotheca clavata])

HSP 1 Score: 114.8 bits (286), Expect = 3.900e-22
Identity = 69/182 (37.91%), Postives = 106/182 (58.24%), Query Frame = 0 
Query:   45 LPSINALPLEGRILL---VTNEAP-APTKVILSGGMYATLTTADGSFRFADVPAGTYLLDVLSPEYYFSQIKISVRPDMEDDAGKILCLEYKYPGAPKIKASYPLLLHAHSEYDYFEKRDAWASLRAQLMSPMTWMLFVSVAAAFFLPKAMDSMSE-DEKKALEEQMKTTNPTAMLQDLMGG 222
            L  + A+ +EGRI L     +EAP +P +V+L GG+ +TL+TADG F F DV  G Y +DV +P Y FSQ K+ +  D       I  LE+KYPG  K+  S+PL++ AH +  YF+ R+   S+   + +P    L V +   + LPK  + M + +E K  +++M T++P  ML+ + GG
Sbjct:   17 LTFVGAVNIEGRIYLPAATDDEAPMSPFQVVLDGGVRSTLSTADGHFVFHDVVPGRYTVDVYTPLYMFSQFKVDISAD-----ENIRVLEFKYPGTGKLPVSHPLVVEAHGKIQYFQPRER-LSIMDLVRNPSFLALVVPIVMVWLLPKLSEGMMDPEEYKRAQDEMGTSDPQQMLRGIFGG 192
[Close]
BLAST of NO02G00900 vs. NCBI_GenBank
Match: OQS07053.1 (hypothetical protein THRCLA_00938 [Thraustotheca clavata])

HSP 1 Score: 114.8 bits (286), Expect = 3.900e-22
Identity = 69/182 (37.91%), Postives = 106/182 (58.24%), Query Frame = 0 
Query:   45 LPSINALPLEGRILL---VTNEAP-APTKVILSGGMYATLTTADGSFRFADVPAGTYLLDVLSPEYYFSQIKISVRPDMEDDAGKILCLEYKYPGAPKIKASYPLLLHAHSEYDYFEKRDAWASLRAQLMSPMTWMLFVSVAAAFFLPKAMDSMSE-DEKKALEEQMKTTNPTAMLQDLMGG 222
            L  + A+ +EGRI L     +EAP +P +V+L GG+ +TL+TADG F F DV  G Y +DV +P Y FSQ K+ +  D       I  LE+KYPG  K+  S+PL++ AH +  YF+ R+   S+   + +P    L V +   + LPK  + M + +E K  +++M T++P  ML+ + GG
Sbjct:   17 LTFVGAVNIEGRIYLPAATDDEAPMSPFQVVLDGGVRSTLSTADGHFVFHDVVPGRYTVDVYTPLYMFSQFKVDISAD-----ENIRVLEFKYPGTGKLPVSHPLVVEAHGKIQYFQPRER-LSIMDLVRNPSFLALVVPIVMVWLLPKLSEGMMDPEEYKRAQDEMGTSDPQQMLRGIFGG 192
The following BLAST results are available for this feature:
BLAST of NO02G00900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ29550.18.900e-2742.86conserved unknown protein [Ectocarpus siliculosus][more]
XP_009530827.16.400e-2538.92hypothetical protein PHYSODRAFT_303013 [Phytophtho... [more]
XP_002903087.14.600e-2336.32conserved hypothetical protein [Phytophthora infes... [more]
ETK78234.11.000e-2235.42hypothetical protein L915_15667 [Phytophthora para... [more]
XP_008911209.11.300e-2235.68hypothetical protein PPTG_15673 [Phytophthora para... [more]
KUF76775.11.300e-2235.68ER membrane protein complex subunit 7 [Phytophthor... [more]
XP_009034766.13.000e-2246.76hypothetical protein AURANDRAFT_6595, partial [Aur... [more]
POM68246.13.000e-2235.87Hypothetical protein PHPALM_15620 [Phytophthora pa... [more]
AIG55405.13.900e-2237.91secreted protein [Thraustotheca clavata][more]
OQS07053.13.900e-2237.91hypothetical protein THRCLA_00938 [Thraustotheca c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006689NSK006689Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00900.1NO02G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627109gene_667Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00900.1NO02G00900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00900 ID=NO02G00900|Name=NO02G00900|organism=Nannochloropsis oceanica|type=gene|length=1354bp
ACAGCACCATTGATCGCAACAATGAGCGACATCATCGCAACCAGTGCTAC
GACGAGAAGCAGCAGCAACCGTTCGTGCCCAAGACCAGTCTCCTCCTTTC
GTCCTCCTTTCTCCACCAGCCTCCTCCTTCCCTTCCTCCTCCTTGTTCTT
ACCCTCCCCTCCATCAACGCCTTGCCGTTGGAAGGCCGCATCCTTCTTGT
GACTAATGAAGCTCCGGCCCCTACAAAAGTCATCTTGAGCGGGGGGATGT
ATGCCACGCTCACGACCGCGGATGGGAGCTTCCGTTTTGCCGACGTGCCA
GCAGgtaaagaggagaatgggaaagcagaaagtgtagaacgggccaagaa
cacatgtgcggaggaacaatgtatggatagaaaggcttgtagtatggaac
gaaaattgaatggtgctgtcgtctcatgtaactttctttccaacaatcaa
aaatccacacgtacagGTACATATTTGCTCGATGTCCTTTCGCCCGAGTA
TTACTTCAGTCAGgtaccttaattattttcgtttttaacatcaccgataa
gcgcacagcagcttcttcaccctcgttcatttcgcgcctataccaaatcc
agATCAAAATCAGCGTCCGCCCCGACATGGAGGACGATGCTGGCAAAATA
TTGTGCCTGGAGTACAAGTACCCTGgtacgtgttgctttccgctggcgaa
gccttttatcttcatgtgaaagtttttatctttcatttattttctctctt
ttcttccgtattttatctcttgtcttccgtaaacgcggagacgtgctttt
gaaggagagactgtaaggaggccgaaaatgcattggctcacccgtccttg
ctccgatctgccccttcttccctccctccctccctcccttctccgtcttt
tccgtcaatgaatcacagGGGCCCCCAAGATAAAGGCTTCCTACCCCCTC
CTCCTACATGCCCACAGCGAGTACGACTACTTTGAGAAACGTGATGCTTG
GGCAAGCCTGAGAGCCCAATTGATGTCGCCAATGACCTGGATGTTATTTG
TAAGTGTGGCCGCCGCGTTCTTTCTCCCAAAGGCGATGGATTCCATGAGT
GAGGACGAGAAGAAAGCCTTGGAAGAGCAGATGAAGACCACAAACCCCAC
GGCCATGCTCCAGGACCTGATGGGTGGTGGCGGTGGTGCTGGGACCGGGG
CGGGGGTTGGGGGAGGAGGGAGTGGGAAAAAGAAAGTCGGAGGGGGACGA
TGACAAGTCAAGAAGCCAAATAAAGAGCGCACAAAGTAAAAAATAATTAC
AGGGATGATAGGCGAAAATGTGTATTTTTGAGTCGTGCAGAACATATATC
AAAT
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protein sequence of NO02G00900.1

>NO02G00900.1-protein ID=NO02G00900.1-protein|Name=NO02G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MSDIIATSATTRSSSNRSCPRPVSSFRPPFSTSLLLPFLLLVLTLPSINA
LPLEGRILLVTNEAPAPTKVILSGGMYATLTTADGSFRFADVPAGTYLLD
VLSPEYYFSQIKISVRPDMEDDAGKILCLEYKYPGAPKIKASYPLLLHAH
SEYDYFEKRDAWASLRAQLMSPMTWMLFVSVAAAFFLPKAMDSMSEDEKK
ALEEQMKTTNPTAMLQDLMGGGGGAGTGAGVGGGGSGKKKVGGGR*
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Synonyms
Publications