NO02G00900.1, NO02G00900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00900.1
Unique NameNO02G00900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length860
Alignment locationchr2:290451..291804 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:290451..291804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00900.1 vs.
Match: CBJ29550.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 128.3 bits (321), Expect = 3.400e-26
Identity = 82/201 (40.80%), Postives = 121/201 (60.20%), Query Frame = 0 
Query:   68 TKVILSGGMYATLTTADGSFRFADVPAGTYLLDVLSPEYYFSQIKISVRPDMEDDAGKILCLEYKYPGAPKIKASYPLLLHAHSEYDYFEKRDAWASLRAQLMSPMTWMLFVSVAAAFFLPKAMDSMS-------EDEKKALEEQMKTTNPTAMLQDLMGG------------------GGGAGTGAGV---GGGGSGKKK 241
            TKV+L+GG +++LT  DGSF F DV AG YLL+VLSP ++FS +KI V     DD   I+ +EYKYPGAP+ +A +PLLL AH+++++FEKR+    +     SPMT ++ +S+A  FFLPK M ++        +D++KA++E     + +++L + + G                  GGGA  G+G     GGGS KKK
Sbjct:   10 TKVVLNGGQHSSLTARDGSFAFRDVAAGVYLLEVLSPNFHFSAMKIKV-----DDMTGIIAIEYKYPGAPRKEAIHPLLLTAHTKWNHFEKREG-MKVGGMFKSPMTIIMVLSMAMMFFLPKMMANLDPEQLEEIKDQQKAVQESTANLSFSSLLSNALAGQAIPQQQQGGSATPVQRAGGGASAGSGSTSRTGGGSNKKK 204
The following BLAST results are available for this feature:
BLAST of NO02G00900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ29550.13.400e-2640.80conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00900NO02G00900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00900.1NO02G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00900.1.cds1NO02G00900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00900.1.cds2NO02G00900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00900.1.cds3NO02G00900.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00900.1.cds4NO02G00900.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00900.1 ID=NO02G00900.1|Name=NO02G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=860bp
ACAGCACCATTGATCGCAACAATGAGCGACATCATCGCAACCAGTGCTAC
GACGAGAAGCAGCAGCAACCGTTCGTGCCCAAGACCAGTCTCCTCCTTTC
GTCCTCCTTTCTCCACCAGCCTCCTCCTTCCCTTCCTCCTCCTTGTTCTT
ACCCTCCCCTCCATCAACGCCTTGCCGTTGGAAGGCCGCATCCTTCTTGT
GACTAATGAAGCTCCGGCCCCTACAAAAGTCATCTTGAGCGGGGGGATGT
ATGCCACGCTCACGACCGCGGATGGGAGCTTCCGTTTTGCCGACGTGCCA
GCAGGTACATATTTGCTCGATGTCCTTTCGCCCGAGTATTACTTCAGTCA
GATCAAAATCAGCGTCCGCCCCGACATGGAGGACGATGCTGGCAAAATAT
TGTGCCTGGAGTACAAGTACCCTGGGGCCCCCAAGATAAAGGCTTCCTAC
CCCCTCCTCCTACATGCCCACAGCGAGTACGACTACTTTGAGAAACGTGA
TGCTTGGGCAAGCCTGAGAGCCCAATTGATGTCGCCAATGACCTGGATGT
TATTTGTAAGTGTGGCCGCCGCGTTCTTTCTCCCAAAGGCGATGGATTCC
ATGAGTGAGGACGAGAAGAAAGCCTTGGAAGAGCAGATGAAGACCACAAA
CCCCACGGCCATGCTCCAGGACCTGATGGGTGGTGGCGGTGGTGCTGGGA
CCGGGGCGGGGGTTGGGGGAGGAGGGAGTGGGAAAAAGAAAGTCGGAGGG
GGACGATGACAAGTCAAGAAGCCAAATAAAGAGCGCACAAAGTAAAAAAT
AATTACAGGGATGATAGGCGAAAATGTGTATTTTTGAGTCGTGCAGAACA
TATATCAAAT
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protein sequence of NO02G00900.1

>NO02G00900.1-protein ID=NO02G00900.1-protein|Name=NO02G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MSDIIATSATTRSSSNRSCPRPVSSFRPPFSTSLLLPFLLLVLTLPSINA
LPLEGRILLVTNEAPAPTKVILSGGMYATLTTADGSFRFADVPAGTYLLD
VLSPEYYFSQIKISVRPDMEDDAGKILCLEYKYPGAPKIKASYPLLLHAH
SEYDYFEKRDAWASLRAQLMSPMTWMLFVSVAAAFFLPKAMDSMSEDEKK
ALEEQMKTTNPTAMLQDLMGGGGGAGTGAGVGGGGSGKKKVGGGR*
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mRNA from alignment at chr2:290451..291804-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00900.1 ID=NO02G00900.1|Name=NO02G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1354bp|location=Sequence derived from alignment at chr2:290451..291804- (Nannochloropsis oceanica)
ACAGCACCATTGATCGCAACAATGAGCGACATCATCGCAACCAGTGCTAC
GACGAGAAGCAGCAGCAACCGTTCGTGCCCAAGACCAGTCTCCTCCTTTC
GTCCTCCTTTCTCCACCAGCCTCCTCCTTCCCTTCCTCCTCCTTGTTCTT
ACCCTCCCCTCCATCAACGCCTTGCCGTTGGAAGGCCGCATCCTTCTTGT
GACTAATGAAGCTCCGGCCCCTACAAAAGTCATCTTGAGCGGGGGGATGT
ATGCCACGCTCACGACCGCGGATGGGAGCTTCCGTTTTGCCGACGTGCCA
GCAGGTAAAGAGGAGAATGGGAAAGCAGAAAGTGTAGAACGGGCCAAGAA
CACATGTGCGGAGGAACAATGTATGGATAGAAAGGCTTGTAGTATGGAAC
GAAAATTGAATGGTGCTGTCGTCTCATGTAACTTTCTTTCCAACAATCAA
AAATCCACACGTACAGGTACATATTTGCTCGATGTCCTTTCGCCCGAGTA
TTACTTCAGTCAGGTACCTTAATTATTTTCGTTTTTAACATCACCGATAA
GCGCACAGCAGCTTCTTCACCCTCGTTCATTTCGCGCCTATACCAAATCC
AGATCAAAATCAGCGTCCGCCCCGACATGGAGGACGATGCTGGCAAAATA
TTGTGCCTGGAGTACAAGTACCCTGGTACGTGTTGCTTTCCGCTGGCGAA
GCCTTTTATCTTCATGTGAAAGTTTTTATCTTTCATTTATTTTCTCTCTT
TTCTTCCGTATTTTATCTCTTGTCTTCCGTAAACGCGGAGACGTGCTTTT
GAAGGAGAGACTGTAAGGAGGCCGAAAATGCATTGGCTCACCCGTCCTTG
CTCCGATCTGCCCCTTCTTCCCTCCCTCCCTCCCTCCCTTCTCCGTCTTT
TCCGTCAATGAATCACAGGGGCCCCCAAGATAAAGGCTTCCTACCCCCTC
CTCCTACATGCCCACAGCGAGTACGACTACTTTGAGAAACGTGATGCTTG
GGCAAGCCTGAGAGCCCAATTGATGTCGCCAATGACCTGGATGTTATTTG
TAAGTGTGGCCGCCGCGTTCTTTCTCCCAAAGGCGATGGATTCCATGAGT
GAGGACGAGAAGAAAGCCTTGGAAGAGCAGATGAAGACCACAAACCCCAC
GGCCATGCTCCAGGACCTGATGGGTGGTGGCGGTGGTGCTGGGACCGGGG
CGGGGGTTGGGGGAGGAGGGAGTGGGAAAAAGAAAGTCGGAGGGGGACGA
TGACAAGTCAAGAAGCCAAATAAAGAGCGCACAAAGTAAAAAATAATTAC
AGGGATGATAGGCGAAAATGTGTATTTTTGAGTCGTGCAGAACATATATC
AAAT
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Coding sequence (CDS) from alignment at chr2:290451..291804-

>NO02G00900.1 ID=NO02G00900.1|Name=NO02G00900.1|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at chr2:290451..291804- (Nannochloropsis oceanica)
ATGAGCGACATCATCGCAACCAGTGCTACGACGAGAAGCAGCAGCAACCG
TTCGTGCCCAAGACCAGTCTCCTCCTTTCGTCCTCCTTTCTCCACCAGCC
TCCTCCTTCCCTTCCTCCTCCTTGTTCTTACCCTCCCCTCCATCAACGCC
TTGCCGTTGGAAGGCCGCATCCTTCTTGTGACTAATGAAGCTCCGGCCCC
TACAAAAGTCATCTTGAGCGGGGGGATGTATGCCACGCTCACGACCGCGG
ATGGGAGCTTCCGTTTTGCCGACGTGCCAGCAGGTACATATTTGCTCGAT
GTCCTTTCGCCCGAGTATTACTTCAGTCAGATCAAAATCAGCGTCCGCCC
CGACATGGAGGACGATGCTGGCAAAATATTGTGCCTGGAGTACAAGTACC
CTGGGGCCCCCAAGATAAAGGCTTCCTACCCCCTCCTCCTACATGCCCAC
AGCGAGTACGACTACTTTGAGAAACGTGATGCTTGGGCAAGCCTGAGAGC
CCAATTGATGTCGCCAATGACCTGGATGTTATTTGTAAGTGTGGCCGCCG
CGTTCTTTCTCCCAAAGGCGATGGATTCCATGAGTGAGGACGAGAAGAAA
GCCTTGGAAGAGCAGATGAAGACCACAAACCCCACGGCCATGCTCCAGGA
CCTGATGGGTGGTGGCGGTGGTGCTGGGACCGGGGCGGGGGTTGGGGGAG
GAGGGAGTGGGAAAAAGAAAGTCGGAGGGGGACGATGA
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Synonyms
Publications