NO02G00430, NO02G00430 (gene) Nannochloropsis oceanica

Overview
NameNO02G00430
Unique NameNO02G00430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3197
Alignment locationchr2:149524..152720 -

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Properties
Property NameValue
DescriptionTranscriptional repressor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:149524..152720 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0007165signal transduction
GO:0007165signal transduction
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR036860SH2_dom_sf
IPR001217STAT
IPR000980SH2
Homology
BLAST of NO02G00430 vs. NCBI_GenBank
Match: EWM28181.1 (sh2 domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 270.4 bits (690), Expect = 1.500e-68
Identity = 218/688 (31.69%), Postives = 296/688 (43.02%), Query Frame = 0
Query:    2 FDALYQVSLGETHFHPSDKETLCETVGTALGVGGARNCRDLLRALQGPDPSRRILLLLDGIDRFLTHGSALIPVLSFVLGKHHGLHLLLTAEGSLNDNGDGLLESTPEKVVELGALSPTNAAHLLVYVAPRRLRFEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHPTSHPIPLAAAKTEALTQLSSSPVLRELHGHPKAILAFAPLLEGHRLEGLNDRAKRCYRQASS--------------------------------HRGWGGRERGGEDERLKLGRGMMSSMLLVEKEEEEACALNQFNFKDGACAKLWAELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSLGVPWYRLAAALQAQLKEMLLRESGLRTHQPSTSLPDAEKGLASTSLSRDSMPSGLSTLIGDGRGHNPRIGNNRGLTTACSTSSGQQEHWQQRRLSGQADASLLSHGAGAWRGSGERLRMLDG-VRGLSDTDITFLRAKLALQ-PKSDMVRAQDFEAFSHWWVPMMSTLKQLAREWLIETPTPLIMGIIGRKEAEGLLRKKPIGTFLIRFSTTHLGLLAISFVVAPPPXXXXXXXXXXXXXXXXXXXKLIQHCLVRVSE-MGCELFMEPGRRRYEKLEDLINDVASLTHLYPDTPKERALQALQR 655
            FDA+Y V L    +   +KETLC+ +G A+G   A N R+++  LQ   PS R++++LDG DRF    ++L+ VLS++L + HGLHLL+TAEGS+  +G G LES+ EKVV LG LS    AH+L  +AP     EE                                                   S P    A + EA  +L++SPV+REL GHPKAI+ FAPLLE HRLE L D+AK+CY  AS                                           G DE+ +L        L + +E EEA    QF  ++    +LW E+                                            +  GVPWYRL  ALQ +L++ L+               DA +      LSR  +    +T       H    GN     +   +     E  Q  +++  A  S+                  DG +RGL   DI F++ +L ++ P+SD+VR  DF  F   WVP  +++  L REWL   P  L+ G + RKE E LL+    GTFL RFST+HLGLL++SFV                          I+H LV+V E   C +FMEPGR R+  LEDLI   ASL   YP  PK  AL  ++R
Sbjct:  346 FDAIYMVPLRRKEYRSYEKETLCKVIGAAIGFEDASNEREIVFLLQDKHPSGRVIMVLDGPDRFFNRSNSLVQVLSYLLSRIHGLHLLVTAEGSVLGSGSGRLESSSEKVVHLGPLSDVATAHMLANIAPPGFDLEEM-------------------------------------------------MSRPY---ATREEAYAELAASPVIRELRGHPKAIVMFAPLLEDHRLEDLYDKAKQCYVDASQVVEVDTPSMGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXAENGRDEKREL------DALALARETEEA---RQF-LREPTSQRLWLEVV---------------------------------RQGGARQSSSMHQGVPWYRLTDALQEELRKALI---------------DALR------LSRFHIEDFCAT-------HCSTNGNGGAEGSKAFSPPAVSETKQDSKVADGATISIADK---------------DGTIRGLEPGDIQFIKDRLVIRTPESDLVRITDFAVFCEGWVPAQNSIALLCREWLCNKPR-LLHGFLSRKETEALLQGYKEGTFLFRFSTSHLGLLSLSFV-----GKSRKNYPNDEEGEKKAKALHIRHFLVQVEEDRRCVVFMEPGRSRHASLEDLIMSSASLLEFYPGVPKAHALTQMRR 889          
BLAST of NO02G00430 vs. NCBI_GenBank
Match: EWM30623.1 (transcriptional repressor [Nannochloropsis gaditana])

HSP 1 Score: 201.4 bits (511), Expect = 8.800e-48
Identity = 113/179 (63.13%), Postives = 137/179 (76.54%), Query Frame = 0
Query:  476 VRGLSDTDITFLRAKLALQPKSDMVRAQDFEAFSHWWVPMMSTLKQLAREWLIETPTPLIMGIIGRKEAEGLLRKKPIGTFLIRFSTTHLGLLAISFVVAPPPXXXXXXXXXXXXXXXXXXXKLIQHCLVRVSEMGCELFMEPGRRRYEKLEDLINDVASLTHLYPDTPKERALQALQR 655
            +R LSD DI FLR+KLA Q  SDMV A+DFEAF  WW  + S L+ + REWL E PTP+++G  GRKE+E  L++KP GTFL+RFST+HLGLLAISF VAPPP    XXXXXXXXXXX      IQHCLVRV+E GCELFMEPGR+RY+ L+ L+ D+A+LT  YPD PK+  LQAL++
Sbjct:    1 MRVLSDHDIMFLRSKLATQANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISF-VAPPPSPSAXXXXXXXXXXXVGPP--IQHCLVRVTEKGCELFMEPGRKRYDDLQALLEDIATLTLFYPDVPKQDVLQALRK 176          
BLAST of NO02G00430 vs. NCBI_GenBank
Match: XP_005852744.1 (sh2 domain containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU23087.1 sh2 domain containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 164.1 bits (414), Expect = 1.600e-36
Identity = 96/242 (39.67%), Postives = 129/242 (53.31%), Query Frame = 0
Query:    2 FDALYQVSLGETHFHPSDKETLCETVGTALGVGGARNCRDLLRALQGPDPSRRILLLLDGIDRFLTHGSALIPVLSFVLGKHHGLHLLLTAEGSLNDNGDGLLESTPEKVVELGALSPTNAAHLLVYVAPRRLRFEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHPTSHPIPLAAAKTEALTQLSSSPVLRELHGHPKAILAFAPLLEGHRLEGLNDRAKR 244
            FDA+Y V L    +   +KETLC+ +G A+G   A N R+++  LQ   PS R++++LDG DRF    ++L+ VLS++L + HGLHLL+TAEGS+  +G G LES+ EKVV LG LS    AH+L  +AP     EE                                                   S P    A + EA  +L++SPV+REL GHPKAI+ FAPLLE HRLE L D+AK+
Sbjct:  204 FDAIYMVPLRRKEYRSYEKETLCKVIGAAIGFEDASNEREIVFLLQDKHPSGRVIMVLDGPDRFFNRSNSLVQVLSYLLSRIHGLHLLVTAEGSVLGSGSGRLESSSEKVVHLGPLSDVATAHMLANIAPPGFDLEEM-------------------------------------------------MSRPY---ATREEAYAELAASPVIRELRGHPKAIVMFAPLLEDHRLEDLYDKAKQ 393          
BLAST of NO02G00430 vs. NCBI_GenBank
Match: CBJ30253.1 (SH2 domain containing protein [Ectocarpus siliculosus])

HSP 1 Score: 79.7 bits (195), Expect = 3.900e-11
Identity = 51/156 (32.69%), Postives = 71/156 (45.51%), Query Frame = 0
Query:  498 DMVRAQDFEAFSHWWVPMMSTLKQLAREWLIETPTPLIMGIIGRKEAEGLLRKKPIGTFLIRFSTTHLGLLAISFV---VAPPPXXXXXXXXXXXXXXXXXXXKLIQHCLVRVSEMG--CELFMEPGRRRYEKLEDLINDVASLTHLYPDTPKERA 649
            D +  + F  FS WW P++STL  +  +W    P   + G + R  A+ LL ++  GTFL+RFS + +G L ISF    V+P                       ++H LV V   G  C    + G R Y  L D +  +  L  LYPD PKE A
Sbjct:  755 DFISVEAFAKFSQWWAPLISTLGIIRNDWARTRPV-RVHGFMSRLAAKRLLMQRECGTFLLRFSESKMGALVISFTQPSVSP-----------------GRRSLSVKHSLVEVKWGGRCCIQAEKGGMRCYASLHDFVRRIPELKKLYPDIPKEEA 892          
BLAST of NO02G00430 vs. NCBI_GenBank
Match: CBJ30247.1 (SH2 domain containing protein [Ectocarpus siliculosus])

HSP 1 Score: 77.0 bits (188), Expect = 2.500e-10
Identity = 52/148 (35.14%), Postives = 68/148 (45.95%), Query Frame = 0
Query:  505 FEAFSHWWVPMMSTLKQLAREWLIETPTPLIMGIIGRKEAEGLLRKKPIGTFLIRFSTTHLGLLAISFV--VAPPPXXXXXXXXXXXXXXXXXXXKLIQHCLVRVSEMG-CELFMEPGRR-RYEKLEDLINDVASLTHLYPDTPKERA 649
            F  FS WW P+M TL  L  +W    PT  + G I R  AE  L ++  GTFL+RFS +  G L +SF   V                         ++HCLV V   G C + +E G +  Y  L DL+   +S+  LYPD  KE A
Sbjct:  793 FVEFSLWWAPLMPTLSLLRNDWASTNPT-RVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVTQAAPRASSMLTSAPRSRPRSQSMCVKHCLVEVRRGGWCYIEVEQGSKVPYPSLHDLVLACSSMQVLYPDVRKEDA 939          
The following BLAST results are available for this feature:
BLAST of NO02G00430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM28181.11.500e-6831.69sh2 domain containing protein [Nannochloropsis gad... [more]
EWM30623.18.800e-4863.13transcriptional repressor [Nannochloropsis gaditan... [more]
XP_005852744.11.600e-3639.67sh2 domain containing protein, partial [Nannochlor... [more]
CBJ30253.13.900e-1132.69SH2 domain containing protein [Ectocarpus siliculo... [more]
CBJ30247.12.500e-1035.14SH2 domain containing protein [Ectocarpus siliculo... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR032ncniR032Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006626NSK006626Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00430.1NO02G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|137694gene_613Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100671g1gene49Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00430.1NO02G00430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00430 ID=NO02G00430|Name=NO02G00430|organism=Nannochloropsis oceanica|type=gene|length=3197bp
ATGTTCGACGCCCTGTACCAAGTCTCCTTAGGCGAAACGCACTTCCACCC
TTCGGACAAGGAGACGTTGTGCGAGACAGTAGGTACGGCGCTTGGGGTGG
GCGGGGCAAGGAACTGCAGGGACCTCCTTCGCGCACTCCAAGGCCCGGAT
CCTTCCCGCCGCATCCTCCTCCTCCTCGACGGAATCGATCGCTTCCTCAC
TCATGGCTCCGCGCTTATTCCCGTGCTCAGTTTCGTGCTGGGAAAGCACC
ATGGACTCCACCTCCTCCTCACTGCCGAGGGGTCATTGAATGATAACGGT
GATGGACTCCTTGAGAGTACCCCCGAGAAGGTGGTTGAGCTAGGCGCCCT
ATCCCCCACGAACGCCGCGCACCTCCTCGTCTACGTCGCTCCCCGTCGTC
TCCGCTTCGAGGAAATGTCCTCCTCTTCCTCCTCCTCCTTCTCCTTCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTCCAC
CGCCATCATCAAACCTCCCTCAACCTCCACCACCAGCATCAGCACTAACC
CCCCCTCCCACCCGACCTCCCATCCCATCCCCCTGGCCGCCGCCAAAACC
GAGGCATTGACGCAGCTGTCCTCGTCCCCTGTCCTGCGGGAACTGCACGG
CCATCCCAAGGCGATCTTGGCCTTTGCTCCCCTCCTCGAAGGACATCGGC
TGGAAGGCCTCAATGACCGCGCCAAAAGGTGCTACCGCCAGGCCTCGTCC
CACAGGGGGTGGGGGGGGAGGGAGAGAGGGGGGGAAGATGAGAGGTTGAA
GTTGGGGAGAGGGATGATGTCATCGATGTTGCTGGTAGAGAAGGAGGAGG
AGGAGGCATGCGCACTCAATCAGTTTAACTTCAAGGACGGGGCTTGTGCG
AAGCTTTGGGCTGAGCTGACGTCTTCCTCCTCCTCTTCCTCCTCCATGTT
AGGGGTAGGGAGTCGGCGTCGATCTCACTTGTCTACGTCCTCTTCCTCGG
CCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCATTT
TTGTCCCTGGGCGTGCCGTGGTACCGGCTGGCGGCGGCGTTGCAGGCCCA
ATTGAAGGAGATGCTCTTGAGGGAGAGTGGGCTCAGgtagggagggaggg
agggaacgagggaagtgtgacggagggatgactggagatagaagagaagg
taggaaaaaaggaaggagagagaggggaggcggaaagaacgatagagaga
aagagacagtgagtggacgacccctcatttctgttcaccccctaccactt
gccgccgccgatcacctcacgagtagGACGCATCAGCCTTCTACCTCTCT
TCCTGACGCTGAGAAAGGCCTTGCTTCCACTTCATTATCTCGCGATAGCA
TGCCTTCTGGTCTCTCTACCCTCATTGGTGATGGCCGCGGCCACAACCCC
CGCATCGGCAATAATCGGGGTTTAACCACAGCTTGTTCAACCTCCAGCGG
ACAGCAGGAGCACTGGCAGCAACGACGGCTCTCGGGCCAAGCGGATGCTT
CACTGCTGTCGCATGGGGCCGGAGCATGGAGAGGGAGCGGGGAGAGGTTG
CGGATGCTGGACGGCGTGCGGGGTCTCTCGGACACGGACATCACCTTCTT
GCGGGCCAAGCTGgtgaggagggagggagggaaggaggcagggaggggga
cggggggaggaatcttcataaccattactcttcgtagtcattgcaatcgt
tctgaccctttgggggttctttttaatcattattcagGCTCTGCAACCCA
AGTCGGACATGGTCAGAGCTCAGGATTTCGAGGCTTTCTCCCACTGgtaa
agagggaaggaaggagggggggggggaagggaaggaggggggacgcccac
gcaatttcactcacgtccgtacctgcaactattaccatctgttcctcccc
tcccccccttccctctaccttccagGTGGGTTCCGATGATGAGCACCTTA
AAGCAACTTGCCAGGGAATGGTTAATCGAAACTCCCACGCCGCTTATCAT
GGGCATCATCGGCCGGAAGGAGGCCGAGGGCTTGTTGAGGAAGAAGCCAA
TAGgtgaggaagacgggcgaatgagagggaggcagaggaggatggaggga
aggagggggcgaggggggaaatgggaggaaggtagcgaccctcatgcgtg
catttactcgctccgatcctcatacatacatgcactccgtccgaccacaa
tgcattcattcatccgatcgtcatgcacgcatttacccgttgcaattctc
atgcgtatattcactcactccttcctttctccttttcaacagGGACATTT
CTTATCCGCTTCTCTACCACCCACCTGGGCCTCCTCGCCATCTCCTTCGT
CGTCGCCCCACCTCCCTCCCCCTCCTCCGCCGTTTCCTCCCCTCCCTCCC
TCCCTCCCGCCCTTCCTCCCTCGAAGCTGATCCAGCACTGCCTGGTCCGG
GTATCCGAGATGGGCTGTGAATTGTTCATGGAACCGGGAAGAAGACGATA
TGAAAAATTGGAGgtggggtaggaagggtgggagggtgggtgagtgggag
ggagggaggaaagttgctgctgtgaaatgagaggagaatgaataggaggg
atctttcgtcgaggttctgcgtctgaccataacctcctccttccttccct
cctcccttcctccctctcctcagGACCTGATCAATGACGTGGCCTCGCTC
ACTCACTTGTACCCGGATACCCCCAAAGAGAGGGCACTGCAAGCCCTCCA
GCGAGAAAACGCCCCAGATGATGGTGCCACCGCTGCTGCTGCTGCTGCTG
CTGGGACAAATGCTGAGACAGATGCTGATGCGCGGGCAGCCGTTGGACAG
GCATGAGAGAAAGAACGAGGAGGAGGACGGCGAGGAGGAGGACGACGACG
AGAAGGACGAAGGCGAGGAAGAGGGGGGGCAGTCAATCTACACTTCCACC
TATCAGAGGGGAAACAAATGTCAAGTTCAAAGCAATTAAATCAAAAGCAA
AATGAAAATATAGCAATCAAGGCACATGTAGTGGGAAGTGGGCGTTTCTT
CTACATTAATTTTTTTTTTTTTTTTTTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
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protein sequence of NO02G00430.1

>NO02G00430.1-protein ID=NO02G00430.1-protein|Name=NO02G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=688bp
MFDALYQVSLGETHFHPSDKETLCETVGTALGVGGARNCRDLLRALQGPD
PSRRILLLLDGIDRFLTHGSALIPVLSFVLGKHHGLHLLLTAEGSLNDNG
DGLLESTPEKVVELGALSPTNAAHLLVYVAPRRLRFEEMSSSSSSSFSFS
SSSSSSSSSSSSSSSSTAIIKPPSTSTTSISTNPPSHPTSHPIPLAAAKT
EALTQLSSSPVLRELHGHPKAILAFAPLLEGHRLEGLNDRAKRCYRQASS
HRGWGGRERGGEDERLKLGRGMMSSMLLVEKEEEEACALNQFNFKDGACA
KLWAELTSSSSSSSSMLGVGSRRRSHLSTSSSSASFSSSSSSSSSSSSSF
LSLGVPWYRLAAALQAQLKEMLLRESGLRTHQPSTSLPDAEKGLASTSLS
RDSMPSGLSTLIGDGRGHNPRIGNNRGLTTACSTSSGQQEHWQQRRLSGQ
ADASLLSHGAGAWRGSGERLRMLDGVRGLSDTDITFLRAKLALQPKSDMV
RAQDFEAFSHWWVPMMSTLKQLAREWLIETPTPLIMGIIGRKEAEGLLRK
KPIGTFLIRFSTTHLGLLAISFVVAPPPSPSSAVSSPPSLPPALPPSKLI
QHCLVRVSEMGCELFMEPGRRRYEKLEDLINDVASLTHLYPDTPKERALQ
ALQRENAPDDGATAAAAAAAGTNAETDADARAAVGQA*
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Synonyms
Publications