NO02G00430.1, NO02G00430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00430.1
Unique NameNO02G00430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2355
Alignment locationchr2:149524..152720 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:149524..152720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G00430.1 vs.
Match: EWM30623.1 (transcriptional repressor [Nannochloropsis gaditana])

HSP 1 Score: 217.2 bits (552), Expect = 1.500e-52
Identity = 110/179 (61.45%), Postives = 137/179 (76.54%), Query Frame = 0
Query:  476 VRGLSDTDITFLRAKLALQPKSDMVRAQDFEAFSHWWVPMMSTLKQLAREWLIETPTPLIMGIIGRKEAEGLLRKKPIGTFLIRFSTTHLGLLAISFVVAPPPSPSSAVSSPPSLPPALPPSKLIQHCLVRVSEMGCELFMEPGRRRYEKLEDLINDVASLTHLYPDTPKERALQALQR 655
            +R LSD DI FLR+KLA Q  SDMV A+DFEAF  WW  + S L+ + REWL E PTP+++G  GRKE+E  L++KP GTFL+RFST+HLGLLAISF VAPPPSPS++V  PP  P + P    IQHCLVRV+E GCELFMEPGR+RY+ L+ L+ D+A+LT  YPD PK+  LQAL++
Sbjct:    1 MRVLSDHDIMFLRSKLATQANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISF-VAPPPSPSASV--PPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQALLEDIATLTLFYPDVPKQDVLQALRK 176          
The following BLAST results are available for this feature:
BLAST of NO02G00430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30623.11.500e-5261.45transcriptional repressor [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00430NO02G00430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00430.1NO02G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00430.1.cds1NO02G00430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00430.1.cds2NO02G00430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00430.1.cds3NO02G00430.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00430.1.cds4NO02G00430.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00430.1.cds5NO02G00430.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00430.1.cds6NO02G00430.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00430.1 ID=NO02G00430.1|Name=NO02G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=2355bp
ATGTTCGACGCCCTGTACCAAGTCTCCTTAGGCGAAACGCACTTCCACCC
TTCGGACAAGGAGACGTTGTGCGAGACAGTAGGTACGGCGCTTGGGGTGG
GCGGGGCAAGGAACTGCAGGGACCTCCTTCGCGCACTCCAAGGCCCGGAT
CCTTCCCGCCGCATCCTCCTCCTCCTCGACGGAATCGATCGCTTCCTCAC
TCATGGCTCCGCGCTTATTCCCGTGCTCAGTTTCGTGCTGGGAAAGCACC
ATGGACTCCACCTCCTCCTCACTGCCGAGGGGTCATTGAATGATAACGGT
GATGGACTCCTTGAGAGTACCCCCGAGAAGGTGGTTGAGCTAGGCGCCCT
ATCCCCCACGAACGCCGCGCACCTCCTCGTCTACGTCGCTCCCCGTCGTC
TCCGCTTCGAGGAAATGTCCTCCTCTTCCTCCTCCTCCTTCTCCTTCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTCCAC
CGCCATCATCAAACCTCCCTCAACCTCCACCACCAGCATCAGCACTAACC
CCCCCTCCCACCCGACCTCCCATCCCATCCCCCTGGCCGCCGCCAAAACC
GAGGCATTGACGCAGCTGTCCTCGTCCCCTGTCCTGCGGGAACTGCACGG
CCATCCCAAGGCGATCTTGGCCTTTGCTCCCCTCCTCGAAGGACATCGGC
TGGAAGGCCTCAATGACCGCGCCAAAAGGTGCTACCGCCAGGCCTCGTCC
CACAGGGGGTGGGGGGGGAGGGAGAGAGGGGGGGAAGATGAGAGGTTGAA
GTTGGGGAGAGGGATGATGTCATCGATGTTGCTGGTAGAGAAGGAGGAGG
AGGAGGCATGCGCACTCAATCAGTTTAACTTCAAGGACGGGGCTTGTGCG
AAGCTTTGGGCTGAGCTGACGTCTTCCTCCTCCTCTTCCTCCTCCATGTT
AGGGGTAGGGAGTCGGCGTCGATCTCACTTGTCTACGTCCTCTTCCTCGG
CCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCATTT
TTGTCCCTGGGCGTGCCGTGGTACCGGCTGGCGGCGGCGTTGCAGGCCCA
ATTGAAGGAGATGCTCTTGAGGGAGAGTGGGCTCAGGACGCATCAGCCTT
CTACCTCTCTTCCTGACGCTGAGAAAGGCCTTGCTTCCACTTCATTATCT
CGCGATAGCATGCCTTCTGGTCTCTCTACCCTCATTGGTGATGGCCGCGG
CCACAACCCCCGCATCGGCAATAATCGGGGTTTAACCACAGCTTGTTCAA
CCTCCAGCGGACAGCAGGAGCACTGGCAGCAACGACGGCTCTCGGGCCAA
GCGGATGCTTCACTGCTGTCGCATGGGGCCGGAGCATGGAGAGGGAGCGG
GGAGAGGTTGCGGATGCTGGACGGCGTGCGGGGTCTCTCGGACACGGACA
TCACCTTCTTGCGGGCCAAGCTGGCTCTGCAACCCAAGTCGGACATGGTC
AGAGCTCAGGATTTCGAGGCTTTCTCCCACTGGTGGGTTCCGATGATGAG
CACCTTAAAGCAACTTGCCAGGGAATGGTTAATCGAAACTCCCACGCCGC
TTATCATGGGCATCATCGGCCGGAAGGAGGCCGAGGGCTTGTTGAGGAAG
AAGCCAATAGGGACATTTCTTATCCGCTTCTCTACCACCCACCTGGGCCT
CCTCGCCATCTCCTTCGTCGTCGCCCCACCTCCCTCCCCCTCCTCCGCCG
TTTCCTCCCCTCCCTCCCTCCCTCCCGCCCTTCCTCCCTCGAAGCTGATC
CAGCACTGCCTGGTCCGGGTATCCGAGATGGGCTGTGAATTGTTCATGGA
ACCGGGAAGAAGACGATATGAAAAATTGGAGGACCTGATCAATGACGTGG
CCTCGCTCACTCACTTGTACCCGGATACCCCCAAAGAGAGGGCACTGCAA
GCCCTCCAGCGAGAAAACGCCCCAGATGATGGTGCCACCGCTGCTGCTGC
TGCTGCTGCTGGGACAAATGCTGAGACAGATGCTGATGCGCGGGCAGCCG
TTGGACAGGCATGAGAGAAAGAACGAGGAGGAGGACGGCGAGGAGGAGGA
CGACGACGAGAAGGACGAAGGCGAGGAAGAGGGGGGGCAGTCAATCTACA
CTTCCACCTATCAGAGGGGAAACAAATGTCAAGTTCAAAGCAATTAAATC
AAAAGCAAAATGAAAATATAGCAATCAAGGCACATGTAGTGGGAAGTGGG
CGTTTCTTCTACATTAATTTTTTTTTTTTTTTTTTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTT
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protein sequence of NO02G00430.1

>NO02G00430.1-protein ID=NO02G00430.1-protein|Name=NO02G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=688bp
MFDALYQVSLGETHFHPSDKETLCETVGTALGVGGARNCRDLLRALQGPD
PSRRILLLLDGIDRFLTHGSALIPVLSFVLGKHHGLHLLLTAEGSLNDNG
DGLLESTPEKVVELGALSPTNAAHLLVYVAPRRLRFEEMSSSSSSSFSFS
SSSSSSSSSSSSSSSSTAIIKPPSTSTTSISTNPPSHPTSHPIPLAAAKT
EALTQLSSSPVLRELHGHPKAILAFAPLLEGHRLEGLNDRAKRCYRQASS
HRGWGGRERGGEDERLKLGRGMMSSMLLVEKEEEEACALNQFNFKDGACA
KLWAELTSSSSSSSSMLGVGSRRRSHLSTSSSSASFSSSSSSSSSSSSSF
LSLGVPWYRLAAALQAQLKEMLLRESGLRTHQPSTSLPDAEKGLASTSLS
RDSMPSGLSTLIGDGRGHNPRIGNNRGLTTACSTSSGQQEHWQQRRLSGQ
ADASLLSHGAGAWRGSGERLRMLDGVRGLSDTDITFLRAKLALQPKSDMV
RAQDFEAFSHWWVPMMSTLKQLAREWLIETPTPLIMGIIGRKEAEGLLRK
KPIGTFLIRFSTTHLGLLAISFVVAPPPSPSSAVSSPPSLPPALPPSKLI
QHCLVRVSEMGCELFMEPGRRRYEKLEDLINDVASLTHLYPDTPKERALQ
ALQRENAPDDGATAAAAAAAGTNAETDADARAAVGQA*
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mRNA from alignment at chr2:149524..152720-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00430.1 ID=NO02G00430.1|Name=NO02G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=3197bp|location=Sequence derived from alignment at chr2:149524..152720- (Nannochloropsis oceanica)
ATGTTCGACGCCCTGTACCAAGTCTCCTTAGGCGAAACGCACTTCCACCC TTCGGACAAGGAGACGTTGTGCGAGACAGTAGGTACGGCGCTTGGGGTGG GCGGGGCAAGGAACTGCAGGGACCTCCTTCGCGCACTCCAAGGCCCGGAT CCTTCCCGCCGCATCCTCCTCCTCCTCGACGGAATCGATCGCTTCCTCAC TCATGGCTCCGCGCTTATTCCCGTGCTCAGTTTCGTGCTGGGAAAGCACC ATGGACTCCACCTCCTCCTCACTGCCGAGGGGTCATTGAATGATAACGGT GATGGACTCCTTGAGAGTACCCCCGAGAAGGTGGTTGAGCTAGGCGCCCT ATCCCCCACGAACGCCGCGCACCTCCTCGTCTACGTCGCTCCCCGTCGTC TCCGCTTCGAGGAAATGTCCTCCTCTTCCTCCTCCTCCTTCTCCTTCTCC TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTCCAC CGCCATCATCAAACCTCCCTCAACCTCCACCACCAGCATCAGCACTAACC CCCCCTCCCACCCGACCTCCCATCCCATCCCCCTGGCCGCCGCCAAAACC GAGGCATTGACGCAGCTGTCCTCGTCCCCTGTCCTGCGGGAACTGCACGG CCATCCCAAGGCGATCTTGGCCTTTGCTCCCCTCCTCGAAGGACATCGGC TGGAAGGCCTCAATGACCGCGCCAAAAGGTGCTACCGCCAGGCCTCGTCC CACAGGGGGTGGGGGGGGAGGGAGAGAGGGGGGGAAGATGAGAGGTTGAA GTTGGGGAGAGGGATGATGTCATCGATGTTGCTGGTAGAGAAGGAGGAGG AGGAGGCATGCGCACTCAATCAGTTTAACTTCAAGGACGGGGCTTGTGCG AAGCTTTGGGCTGAGCTGACGTCTTCCTCCTCCTCTTCCTCCTCCATGTT AGGGGTAGGGAGTCGGCGTCGATCTCACTTGTCTACGTCCTCTTCCTCGG CCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCATTT TTGTCCCTGGGCGTGCCGTGGTACCGGCTGGCGGCGGCGTTGCAGGCCCA ATTGAAGGAGATGCTCTTGAGGGAGAGTGGGCTCAGGTAGGGAGGGAGGG AGGGAACGAGGGAAGTGTGACGGAGGGATGACTGGAGATAGAAGAGAAGG TAGGAAAAAAGGAAGGAGAGAGAGGGGAGGCGGAAAGAACGATAGAGAGA AAGAGACAGTGAGTGGACGACCCCTCATTTCTGTTCACCCCCTACCACTT GCCGCCGCCGATCACCTCACGAGTAGGACGCATCAGCCTTCTACCTCTCT TCCTGACGCTGAGAAAGGCCTTGCTTCCACTTCATTATCTCGCGATAGCA TGCCTTCTGGTCTCTCTACCCTCATTGGTGATGGCCGCGGCCACAACCCC CGCATCGGCAATAATCGGGGTTTAACCACAGCTTGTTCAACCTCCAGCGG ACAGCAGGAGCACTGGCAGCAACGACGGCTCTCGGGCCAAGCGGATGCTT CACTGCTGTCGCATGGGGCCGGAGCATGGAGAGGGAGCGGGGAGAGGTTG CGGATGCTGGACGGCGTGCGGGGTCTCTCGGACACGGACATCACCTTCTT GCGGGCCAAGCTGGTGAGGAGGGAGGGAGGGAAGGAGGCAGGGAGGGGGA CGGGGGGAGGAATCTTCATAACCATTACTCTTCGTAGTCATTGCAATCGT TCTGACCCTTTGGGGGTTCTTTTTAATCATTATTCAGGCTCTGCAACCCA AGTCGGACATGGTCAGAGCTCAGGATTTCGAGGCTTTCTCCCACTGGTAA AGAGGGAAGGAAGGAGGGGGGGGGGGAAGGGAAGGAGGGGGGACGCCCAC GCAATTTCACTCACGTCCGTACCTGCAACTATTACCATCTGTTCCTCCCC TCCCCCCCTTCCCTCTACCTTCCAGGTGGGTTCCGATGATGAGCACCTTA AAGCAACTTGCCAGGGAATGGTTAATCGAAACTCCCACGCCGCTTATCAT GGGCATCATCGGCCGGAAGGAGGCCGAGGGCTTGTTGAGGAAGAAGCCAA TAGGTGAGGAAGACGGGCGAATGAGAGGGAGGCAGAGGAGGATGGAGGGA AGGAGGGGGCGAGGGGGGAAATGGGAGGAAGGTAGCGACCCTCATGCGTG CATTTACTCGCTCCGATCCTCATACATACATGCACTCCGTCCGACCACAA TGCATTCATTCATCCGATCGTCATGCACGCATTTACCCGTTGCAATTCTC ATGCGTATATTCACTCACTCCTTCCTTTCTCCTTTTCAACAGGGACATTT CTTATCCGCTTCTCTACCACCCACCTGGGCCTCCTCGCCATCTCCTTCGT CGTCGCCCCACCTCCCTCCCCCTCCTCCGCCGTTTCCTCCCCTCCCTCCC TCCCTCCCGCCCTTCCTCCCTCGAAGCTGATCCAGCACTGCCTGGTCCGG GTATCCGAGATGGGCTGTGAATTGTTCATGGAACCGGGAAGAAGACGATA TGAAAAATTGGAGGTGGGGTAGGAAGGGTGGGAGGGTGGGTGAGTGGGAG GGAGGGAGGAAAGTTGCTGCTGTGAAATGAGAGGAGAATGAATAGGAGGG ATCTTTCGTCGAGGTTCTGCGTCTGACCATAACCTCCTCCTTCCTTCCCT CCTCCCTTCCTCCCTCTCCTCAGGACCTGATCAATGACGTGGCCTCGCTC ACTCACTTGTACCCGGATACCCCCAAAGAGAGGGCACTGCAAGCCCTCCA GCGAGAAAACGCCCCAGATGATGGTGCCACCGCTGCTGCTGCTGCTGCTG CTGGGACAAATGCTGAGACAGATGCTGATGCGCGGGCAGCCGTTGGACAG GCATGAGAGAAAGAACGAGGAGGAGGACGGCGAGGAGGAGGACGACGACG AGAAGGACGAAGGCGAGGAAGAGGGGGGGCAGTCAATCTACACTTCCACC TATCAGAGGGGAAACAAATGTCAAGTTCAAAGCAATTAAATCAAAAGCAA AATGAAAATATAGCAATCAAGGCACATGTAGTGGGAAGTGGGCGTTTCTT CTACATTAATTTTTTTTTTTTTTTTTTTCTTCTTCTTCTTCTTCTTCTTC TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
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Coding sequence (CDS) from alignment at chr2:149524..152720-

>NO02G00430.1 ID=NO02G00430.1|Name=NO02G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=2064bp|location=Sequence derived from alignment at chr2:149524..152720- (Nannochloropsis oceanica)
ATGTTCGACGCCCTGTACCAAGTCTCCTTAGGCGAAACGCACTTCCACCC
TTCGGACAAGGAGACGTTGTGCGAGACAGTAGGTACGGCGCTTGGGGTGG
GCGGGGCAAGGAACTGCAGGGACCTCCTTCGCGCACTCCAAGGCCCGGAT
CCTTCCCGCCGCATCCTCCTCCTCCTCGACGGAATCGATCGCTTCCTCAC
TCATGGCTCCGCGCTTATTCCCGTGCTCAGTTTCGTGCTGGGAAAGCACC
ATGGACTCCACCTCCTCCTCACTGCCGAGGGGTCATTGAATGATAACGGT
GATGGACTCCTTGAGAGTACCCCCGAGAAGGTGGTTGAGCTAGGCGCCCT
ATCCCCCACGAACGCCGCGCACCTCCTCGTCTACGTCGCTCCCCGTCGTC
TCCGCTTCGAGGAAATGTCCTCCTCTTCCTCCTCCTCCTTCTCCTTCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTCCAC
CGCCATCATCAAACCTCCCTCAACCTCCACCACCAGCATCAGCACTAACC
CCCCCTCCCACCCGACCTCCCATCCCATCCCCCTGGCCGCCGCCAAAACC
GAGGCATTGACGCAGCTGTCCTCGTCCCCTGTCCTGCGGGAACTGCACGG
CCATCCCAAGGCGATCTTGGCCTTTGCTCCCCTCCTCGAAGGACATCGGC
TGGAAGGCCTCAATGACCGCGCCAAAAGGTGCTACCGCCAGGCCTCGTCC
CACAGGGGGTGGGGGGGGAGGGAGAGAGGGGGGGAAGATGAGAGGTTGAA
GTTGGGGAGAGGGATGATGTCATCGATGTTGCTGGTAGAGAAGGAGGAGG
AGGAGGCATGCGCACTCAATCAGTTTAACTTCAAGGACGGGGCTTGTGCG
AAGCTTTGGGCTGAGCTGACGTCTTCCTCCTCCTCTTCCTCCTCCATGTT
AGGGGTAGGGAGTCGGCGTCGATCTCACTTGTCTACGTCCTCTTCCTCGG
CCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCATTT
TTGTCCCTGGGCGTGCCGTGGTACCGGCTGGCGGCGGCGTTGCAGGCCCA
ATTGAAGGAGATGCTCTTGAGGGAGAGTGGGCTCAGGACGCATCAGCCTT
CTACCTCTCTTCCTGACGCTGAGAAAGGCCTTGCTTCCACTTCATTATCT
CGCGATAGCATGCCTTCTGGTCTCTCTACCCTCATTGGTGATGGCCGCGG
CCACAACCCCCGCATCGGCAATAATCGGGGTTTAACCACAGCTTGTTCAA
CCTCCAGCGGACAGCAGGAGCACTGGCAGCAACGACGGCTCTCGGGCCAA
GCGGATGCTTCACTGCTGTCGCATGGGGCCGGAGCATGGAGAGGGAGCGG
GGAGAGGTTGCGGATGCTGGACGGCGTGCGGGGTCTCTCGGACACGGACA
TCACCTTCTTGCGGGCCAAGCTGGCTCTGCAACCCAAGTCGGACATGGTC
AGAGCTCAGGATTTCGAGGCTTTCTCCCACTGGTGGGTTCCGATGATGAG
CACCTTAAAGCAACTTGCCAGGGAATGGTTAATCGAAACTCCCACGCCGC
TTATCATGGGCATCATCGGCCGGAAGGAGGCCGAGGGCTTGTTGAGGAAG
AAGCCAATAGGGACATTTCTTATCCGCTTCTCTACCACCCACCTGGGCCT
CCTCGCCATCTCCTTCGTCGTCGCCCCACCTCCCTCCCCCTCCTCCGCCG
TTTCCTCCCCTCCCTCCCTCCCTCCCGCCCTTCCTCCCTCGAAGCTGATC
CAGCACTGCCTGGTCCGGGTATCCGAGATGGGCTGTGAATTGTTCATGGA
ACCGGGAAGAAGACGATATGAAAAATTGGAGGACCTGATCAATGACGTGG
CCTCGCTCACTCACTTGTACCCGGATACCCCCAAAGAGAGGGCACTGCAA
GCCCTCCAGCGAGAAAACGCCCCAGATGATGGTGCCACCGCTGCTGCTGC
TGCTGCTGCTGGGACAAATGCTGAGACAGATGCTGATGCGCGGGCAGCCG
TTGGACAGGCATGA
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Synonyms
Publications