|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:149524..152720 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00430.1 vs.
Match: EWM30623.1 (transcriptional repressor [Nannochloropsis gaditana]) HSP 1 Score: 217.2 bits (552), Expect = 1.500e-52 Identity = 110/179 (61.45%), Postives = 137/179 (76.54%), Query Frame = 0
Query: 476 VRGLSDTDITFLRAKLALQPKSDMVRAQDFEAFSHWWVPMMSTLKQLAREWLIETPTPLIMGIIGRKEAEGLLRKKPIGTFLIRFSTTHLGLLAISFVVAPPPSPSSAVSSPPSLPPALPPSKLIQHCLVRVSEMGCELFMEPGRRRYEKLEDLINDVASLTHLYPDTPKERALQALQR 655
+R LSD DI FLR+KLA Q SDMV A+DFEAF WW + S L+ + REWL E PTP+++G GRKE+E L++KP GTFL+RFST+HLGLLAISF VAPPPSPS++V PP P + P IQHCLVRV+E GCELFMEPGR+RY+ L+ L+ D+A+LT YPD PK+ LQAL++
Sbjct: 1 MRVLSDHDIMFLRSKLATQANSDMVMAKDFEAFWQWWSLVFSALEIIYREWLCEAPTPVVIGFSGRKESEAALKEKPSGTFLLRFSTSHLGLLAISF-VAPPPSPSASV--PPPSPGSAPVGPPIQHCLVRVTEKGCELFMEPGRKRYDDLQALLEDIATLTLFYPDVPKQDVLQALRK 176
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00430.1 ID=NO02G00430.1|Name=NO02G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=2355bp ATGTTCGACGCCCTGTACCAAGTCTCCTTAGGCGAAACGCACTTCCACCC TTCGGACAAGGAGACGTTGTGCGAGACAGTAGGTACGGCGCTTGGGGTGG GCGGGGCAAGGAACTGCAGGGACCTCCTTCGCGCACTCCAAGGCCCGGAT CCTTCCCGCCGCATCCTCCTCCTCCTCGACGGAATCGATCGCTTCCTCAC TCATGGCTCCGCGCTTATTCCCGTGCTCAGTTTCGTGCTGGGAAAGCACC ATGGACTCCACCTCCTCCTCACTGCCGAGGGGTCATTGAATGATAACGGT GATGGACTCCTTGAGAGTACCCCCGAGAAGGTGGTTGAGCTAGGCGCCCT ATCCCCCACGAACGCCGCGCACCTCCTCGTCTACGTCGCTCCCCGTCGTC TCCGCTTCGAGGAAATGTCCTCCTCTTCCTCCTCCTCCTTCTCCTTCTCC TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTCCAC CGCCATCATCAAACCTCCCTCAACCTCCACCACCAGCATCAGCACTAACC CCCCCTCCCACCCGACCTCCCATCCCATCCCCCTGGCCGCCGCCAAAACC GAGGCATTGACGCAGCTGTCCTCGTCCCCTGTCCTGCGGGAACTGCACGG CCATCCCAAGGCGATCTTGGCCTTTGCTCCCCTCCTCGAAGGACATCGGC TGGAAGGCCTCAATGACCGCGCCAAAAGGTGCTACCGCCAGGCCTCGTCC CACAGGGGGTGGGGGGGGAGGGAGAGAGGGGGGGAAGATGAGAGGTTGAA GTTGGGGAGAGGGATGATGTCATCGATGTTGCTGGTAGAGAAGGAGGAGG AGGAGGCATGCGCACTCAATCAGTTTAACTTCAAGGACGGGGCTTGTGCG AAGCTTTGGGCTGAGCTGACGTCTTCCTCCTCCTCTTCCTCCTCCATGTT AGGGGTAGGGAGTCGGCGTCGATCTCACTTGTCTACGTCCTCTTCCTCGG CCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCATTT TTGTCCCTGGGCGTGCCGTGGTACCGGCTGGCGGCGGCGTTGCAGGCCCA ATTGAAGGAGATGCTCTTGAGGGAGAGTGGGCTCAGGACGCATCAGCCTT CTACCTCTCTTCCTGACGCTGAGAAAGGCCTTGCTTCCACTTCATTATCT CGCGATAGCATGCCTTCTGGTCTCTCTACCCTCATTGGTGATGGCCGCGG CCACAACCCCCGCATCGGCAATAATCGGGGTTTAACCACAGCTTGTTCAA CCTCCAGCGGACAGCAGGAGCACTGGCAGCAACGACGGCTCTCGGGCCAA GCGGATGCTTCACTGCTGTCGCATGGGGCCGGAGCATGGAGAGGGAGCGG GGAGAGGTTGCGGATGCTGGACGGCGTGCGGGGTCTCTCGGACACGGACA TCACCTTCTTGCGGGCCAAGCTGGCTCTGCAACCCAAGTCGGACATGGTC AGAGCTCAGGATTTCGAGGCTTTCTCCCACTGGTGGGTTCCGATGATGAG CACCTTAAAGCAACTTGCCAGGGAATGGTTAATCGAAACTCCCACGCCGC TTATCATGGGCATCATCGGCCGGAAGGAGGCCGAGGGCTTGTTGAGGAAG AAGCCAATAGGGACATTTCTTATCCGCTTCTCTACCACCCACCTGGGCCT CCTCGCCATCTCCTTCGTCGTCGCCCCACCTCCCTCCCCCTCCTCCGCCG TTTCCTCCCCTCCCTCCCTCCCTCCCGCCCTTCCTCCCTCGAAGCTGATC CAGCACTGCCTGGTCCGGGTATCCGAGATGGGCTGTGAATTGTTCATGGA ACCGGGAAGAAGACGATATGAAAAATTGGAGGACCTGATCAATGACGTGG CCTCGCTCACTCACTTGTACCCGGATACCCCCAAAGAGAGGGCACTGCAA GCCCTCCAGCGAGAAAACGCCCCAGATGATGGTGCCACCGCTGCTGCTGC TGCTGCTGCTGGGACAAATGCTGAGACAGATGCTGATGCGCGGGCAGCCG TTGGACAGGCATGAGAGAAAGAACGAGGAGGAGGACGGCGAGGAGGAGGA CGACGACGAGAAGGACGAAGGCGAGGAAGAGGGGGGGCAGTCAATCTACA CTTCCACCTATCAGAGGGGAAACAAATGTCAAGTTCAAAGCAATTAAATC AAAAGCAAAATGAAAATATAGCAATCAAGGCACATGTAGTGGGAAGTGGG CGTTTCTTCTACATTAATTTTTTTTTTTTTTTTTTTCTTCTTCTTCTTCT TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC TTCTT back to topprotein sequence of NO02G00430.1 >NO02G00430.1-protein ID=NO02G00430.1-protein|Name=NO02G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=688bp MFDALYQVSLGETHFHPSDKETLCETVGTALGVGGARNCRDLLRALQGPD PSRRILLLLDGIDRFLTHGSALIPVLSFVLGKHHGLHLLLTAEGSLNDNG DGLLESTPEKVVELGALSPTNAAHLLVYVAPRRLRFEEMSSSSSSSFSFS SSSSSSSSSSSSSSSSTAIIKPPSTSTTSISTNPPSHPTSHPIPLAAAKT EALTQLSSSPVLRELHGHPKAILAFAPLLEGHRLEGLNDRAKRCYRQASS HRGWGGRERGGEDERLKLGRGMMSSMLLVEKEEEEACALNQFNFKDGACA KLWAELTSSSSSSSSMLGVGSRRRSHLSTSSSSASFSSSSSSSSSSSSSF LSLGVPWYRLAAALQAQLKEMLLRESGLRTHQPSTSLPDAEKGLASTSLS RDSMPSGLSTLIGDGRGHNPRIGNNRGLTTACSTSSGQQEHWQQRRLSGQ ADASLLSHGAGAWRGSGERLRMLDGVRGLSDTDITFLRAKLALQPKSDMV RAQDFEAFSHWWVPMMSTLKQLAREWLIETPTPLIMGIIGRKEAEGLLRK KPIGTFLIRFSTTHLGLLAISFVVAPPPSPSSAVSSPPSLPPALPPSKLI QHCLVRVSEMGCELFMEPGRRRYEKLEDLINDVASLTHLYPDTPKERALQ ALQRENAPDDGATAAAAAAAGTNAETDADARAAVGQA* back to topmRNA from alignment at chr2:149524..152720- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00430.1 ID=NO02G00430.1|Name=NO02G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=3197bp|location=Sequence derived from alignment at chr2:149524..152720- (Nannochloropsis oceanica) ATGTTCGACGCCCTGTACCAAGTCTCCTTAGGCGAAACGCACTTCCACCC
TTCGGACAAGGAGACGTTGTGCGAGACAGTAGGTACGGCGCTTGGGGTGG
GCGGGGCAAGGAACTGCAGGGACCTCCTTCGCGCACTCCAAGGCCCGGAT
CCTTCCCGCCGCATCCTCCTCCTCCTCGACGGAATCGATCGCTTCCTCAC
TCATGGCTCCGCGCTTATTCCCGTGCTCAGTTTCGTGCTGGGAAAGCACC
ATGGACTCCACCTCCTCCTCACTGCCGAGGGGTCATTGAATGATAACGGT
GATGGACTCCTTGAGAGTACCCCCGAGAAGGTGGTTGAGCTAGGCGCCCT
ATCCCCCACGAACGCCGCGCACCTCCTCGTCTACGTCGCTCCCCGTCGTC
TCCGCTTCGAGGAAATGTCCTCCTCTTCCTCCTCCTCCTTCTCCTTCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTCCAC
CGCCATCATCAAACCTCCCTCAACCTCCACCACCAGCATCAGCACTAACC
CCCCCTCCCACCCGACCTCCCATCCCATCCCCCTGGCCGCCGCCAAAACC
GAGGCATTGACGCAGCTGTCCTCGTCCCCTGTCCTGCGGGAACTGCACGG
CCATCCCAAGGCGATCTTGGCCTTTGCTCCCCTCCTCGAAGGACATCGGC
TGGAAGGCCTCAATGACCGCGCCAAAAGGTGCTACCGCCAGGCCTCGTCC
CACAGGGGGTGGGGGGGGAGGGAGAGAGGGGGGGAAGATGAGAGGTTGAA
GTTGGGGAGAGGGATGATGTCATCGATGTTGCTGGTAGAGAAGGAGGAGG
AGGAGGCATGCGCACTCAATCAGTTTAACTTCAAGGACGGGGCTTGTGCG
AAGCTTTGGGCTGAGCTGACGTCTTCCTCCTCCTCTTCCTCCTCCATGTT
AGGGGTAGGGAGTCGGCGTCGATCTCACTTGTCTACGTCCTCTTCCTCGG
CCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCATTT
TTGTCCCTGGGCGTGCCGTGGTACCGGCTGGCGGCGGCGTTGCAGGCCCA
ATTGAAGGAGATGCTCTTGAGGGAGAGTGGGCTCAGGTAGGGAGGGAGGG
AGGGAACGAGGGAAGTGTGACGGAGGGATGACTGGAGATAGAAGAGAAGG
TAGGAAAAAAGGAAGGAGAGAGAGGGGAGGCGGAAAGAACGATAGAGAGA
AAGAGACAGTGAGTGGACGACCCCTCATTTCTGTTCACCCCCTACCACTT
GCCGCCGCCGATCACCTCACGAGTAGGACGCATCAGCCTTCTACCTCTCT
TCCTGACGCTGAGAAAGGCCTTGCTTCCACTTCATTATCTCGCGATAGCA
TGCCTTCTGGTCTCTCTACCCTCATTGGTGATGGCCGCGGCCACAACCCC
CGCATCGGCAATAATCGGGGTTTAACCACAGCTTGTTCAACCTCCAGCGG
ACAGCAGGAGCACTGGCAGCAACGACGGCTCTCGGGCCAAGCGGATGCTT
CACTGCTGTCGCATGGGGCCGGAGCATGGAGAGGGAGCGGGGAGAGGTTG
CGGATGCTGGACGGCGTGCGGGGTCTCTCGGACACGGACATCACCTTCTT
GCGGGCCAAGCTGGTGAGGAGGGAGGGAGGGAAGGAGGCAGGGAGGGGGA
CGGGGGGAGGAATCTTCATAACCATTACTCTTCGTAGTCATTGCAATCGT
TCTGACCCTTTGGGGGTTCTTTTTAATCATTATTCAGGCTCTGCAACCCA
AGTCGGACATGGTCAGAGCTCAGGATTTCGAGGCTTTCTCCCACTGGTAA
AGAGGGAAGGAAGGAGGGGGGGGGGGAAGGGAAGGAGGGGGGACGCCCAC
GCAATTTCACTCACGTCCGTACCTGCAACTATTACCATCTGTTCCTCCCC
TCCCCCCCTTCCCTCTACCTTCCAGGTGGGTTCCGATGATGAGCACCTTA
AAGCAACTTGCCAGGGAATGGTTAATCGAAACTCCCACGCCGCTTATCAT
GGGCATCATCGGCCGGAAGGAGGCCGAGGGCTTGTTGAGGAAGAAGCCAA
TAGGTGAGGAAGACGGGCGAATGAGAGGGAGGCAGAGGAGGATGGAGGGA
AGGAGGGGGCGAGGGGGGAAATGGGAGGAAGGTAGCGACCCTCATGCGTG
CATTTACTCGCTCCGATCCTCATACATACATGCACTCCGTCCGACCACAA
TGCATTCATTCATCCGATCGTCATGCACGCATTTACCCGTTGCAATTCTC
ATGCGTATATTCACTCACTCCTTCCTTTCTCCTTTTCAACAGGGACATTT
CTTATCCGCTTCTCTACCACCCACCTGGGCCTCCTCGCCATCTCCTTCGT
CGTCGCCCCACCTCCCTCCCCCTCCTCCGCCGTTTCCTCCCCTCCCTCCC
TCCCTCCCGCCCTTCCTCCCTCGAAGCTGATCCAGCACTGCCTGGTCCGG
GTATCCGAGATGGGCTGTGAATTGTTCATGGAACCGGGAAGAAGACGATA
TGAAAAATTGGAGGTGGGGTAGGAAGGGTGGGAGGGTGGGTGAGTGGGAG
GGAGGGAGGAAAGTTGCTGCTGTGAAATGAGAGGAGAATGAATAGGAGGG
ATCTTTCGTCGAGGTTCTGCGTCTGACCATAACCTCCTCCTTCCTTCCCT
CCTCCCTTCCTCCCTCTCCTCAGGACCTGATCAATGACGTGGCCTCGCTC
ACTCACTTGTACCCGGATACCCCCAAAGAGAGGGCACTGCAAGCCCTCCA
GCGAGAAAACGCCCCAGATGATGGTGCCACCGCTGCTGCTGCTGCTGCTG
CTGGGACAAATGCTGAGACAGATGCTGATGCGCGGGCAGCCGTTGGACAG
GCATGAGAGAAAGAACGAGGAGGAGGACGGCGAGGAGGAGGACGACGACG
AGAAGGACGAAGGCGAGGAAGAGGGGGGGCAGTCAATCTACACTTCCACC
TATCAGAGGGGAAACAAATGTCAAGTTCAAAGCAATTAAATCAAAAGCAA
AATGAAAATATAGCAATCAAGGCACATGTAGTGGGAAGTGGGCGTTTCTT
CTACATTAATTTTTTTTTTTTTTTTTTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT back to topCoding sequence (CDS) from alignment at chr2:149524..152720- >NO02G00430.1 ID=NO02G00430.1|Name=NO02G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=2064bp|location=Sequence derived from alignment at chr2:149524..152720- (Nannochloropsis oceanica) ATGTTCGACGCCCTGTACCAAGTCTCCTTAGGCGAAACGCACTTCCACCC TTCGGACAAGGAGACGTTGTGCGAGACAGTAGGTACGGCGCTTGGGGTGG GCGGGGCAAGGAACTGCAGGGACCTCCTTCGCGCACTCCAAGGCCCGGAT CCTTCCCGCCGCATCCTCCTCCTCCTCGACGGAATCGATCGCTTCCTCAC TCATGGCTCCGCGCTTATTCCCGTGCTCAGTTTCGTGCTGGGAAAGCACC ATGGACTCCACCTCCTCCTCACTGCCGAGGGGTCATTGAATGATAACGGT GATGGACTCCTTGAGAGTACCCCCGAGAAGGTGGTTGAGCTAGGCGCCCT ATCCCCCACGAACGCCGCGCACCTCCTCGTCTACGTCGCTCCCCGTCGTC TCCGCTTCGAGGAAATGTCCTCCTCTTCCTCCTCCTCCTTCTCCTTCTCC TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTCCAC CGCCATCATCAAACCTCCCTCAACCTCCACCACCAGCATCAGCACTAACC CCCCCTCCCACCCGACCTCCCATCCCATCCCCCTGGCCGCCGCCAAAACC GAGGCATTGACGCAGCTGTCCTCGTCCCCTGTCCTGCGGGAACTGCACGG CCATCCCAAGGCGATCTTGGCCTTTGCTCCCCTCCTCGAAGGACATCGGC TGGAAGGCCTCAATGACCGCGCCAAAAGGTGCTACCGCCAGGCCTCGTCC CACAGGGGGTGGGGGGGGAGGGAGAGAGGGGGGGAAGATGAGAGGTTGAA GTTGGGGAGAGGGATGATGTCATCGATGTTGCTGGTAGAGAAGGAGGAGG AGGAGGCATGCGCACTCAATCAGTTTAACTTCAAGGACGGGGCTTGTGCG AAGCTTTGGGCTGAGCTGACGTCTTCCTCCTCCTCTTCCTCCTCCATGTT AGGGGTAGGGAGTCGGCGTCGATCTCACTTGTCTACGTCCTCTTCCTCGG CCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCATTT TTGTCCCTGGGCGTGCCGTGGTACCGGCTGGCGGCGGCGTTGCAGGCCCA ATTGAAGGAGATGCTCTTGAGGGAGAGTGGGCTCAGGACGCATCAGCCTT CTACCTCTCTTCCTGACGCTGAGAAAGGCCTTGCTTCCACTTCATTATCT CGCGATAGCATGCCTTCTGGTCTCTCTACCCTCATTGGTGATGGCCGCGG CCACAACCCCCGCATCGGCAATAATCGGGGTTTAACCACAGCTTGTTCAA CCTCCAGCGGACAGCAGGAGCACTGGCAGCAACGACGGCTCTCGGGCCAA GCGGATGCTTCACTGCTGTCGCATGGGGCCGGAGCATGGAGAGGGAGCGG GGAGAGGTTGCGGATGCTGGACGGCGTGCGGGGTCTCTCGGACACGGACA TCACCTTCTTGCGGGCCAAGCTGGCTCTGCAACCCAAGTCGGACATGGTC AGAGCTCAGGATTTCGAGGCTTTCTCCCACTGGTGGGTTCCGATGATGAG CACCTTAAAGCAACTTGCCAGGGAATGGTTAATCGAAACTCCCACGCCGC TTATCATGGGCATCATCGGCCGGAAGGAGGCCGAGGGCTTGTTGAGGAAG AAGCCAATAGGGACATTTCTTATCCGCTTCTCTACCACCCACCTGGGCCT CCTCGCCATCTCCTTCGTCGTCGCCCCACCTCCCTCCCCCTCCTCCGCCG TTTCCTCCCCTCCCTCCCTCCCTCCCGCCCTTCCTCCCTCGAAGCTGATC CAGCACTGCCTGGTCCGGGTATCCGAGATGGGCTGTGAATTGTTCATGGA ACCGGGAAGAAGACGATATGAAAAATTGGAGGACCTGATCAATGACGTGG CCTCGCTCACTCACTTGTACCCGGATACCCCCAAAGAGAGGGCACTGCAA GCCCTCCAGCGAGAAAACGCCCCAGATGATGGTGCCACCGCTGCTGCTGC TGCTGCTGCTGGGACAAATGCTGAGACAGATGCTGATGCGCGGGCAGCCG TTGGACAGGCATGA back to top
|