NO02G00080, NO02G00080 (gene) Nannochloropsis oceanica

Overview
NameNO02G00080
Unique NameNO02G00080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2700
Alignment locationchr2:19880..22579 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:19880..22579 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO02G00080 vs. NCBI_GenBank
Match: EWM30673.1 (hypothetical protein Naga_100091g6 [Nannochloropsis gaditana])

HSP 1 Score: 438.0 bits (1125), Expect = 3.500e-119
Identity = 218/272 (80.15%), Postives = 255/272 (93.75%), Query Frame = 0 
Query:  158 GCLLLLIVSCLLLTAQAQWGMGKKAKKGDGAVRPEDVQGGLSFDDMQKIAKHSGGKKEMDPFELLKAMDMDLGNVDMKAMVEEAMNSPEVLAMMEDPALLKKALRESPLFENLPGLDKILERPEMDDPEALKEIFRKGMDDFKEISDTIIDLVNDEGKREEIMTELLKNLDPEEQKKMKALVSGDENAVEEAAANLAEVFASMGTEFKRSLDDPDKMEKARQNFLENEDWLDTFEDPDLRAAASDPDKWKDIMRENARLMYGSADEKKNDEL 430
            G LLLL++SCLLL  QAQWGM KK KK DGAVRPEDVQGGLSFDDMQKIAKHSGGK+E++PF++LKAMD+D+G++DMK++VEEAMNSPE+ AMM+DP LLKKALRESPLFENLPGL+KILE+PE DDPE LKE+F+KGMD+FKE+SDTI+D+V+DEGKREE+M ELLKNLDP EQ+KMKAL++G+++A+EEAAANLAE+FA MG E KRSLDDP+KME AR+NFLENE+WL+TFEDPDLRAAASDPDKWKDIMRENARLMYGSADE KNDEL
Sbjct:    9 GRLLLLLLSCLLLIVQAQWGM-KKVKKEDGAVRPEDVQGGLSFDDMQKIAKHSGGKEELNPFDMLKAMDLDIGDLDMKSVVEEAMNSPEIQAMMDDPVLLKKALRESPLFENLPGLEKILEKPEFDDPEKLKELFQKGMDEFKEVSDTILDMVDDEGKREEVMAELLKNLDPSEQRKMKALLAGEDDAIEEAAANLAEIFAGMGNELKRSLDDPEKMENARKNFLENEEWLNTFEDPDLRAAASDPDKWKDIMRENARLMYGSADE-KNDEL 278
The following BLAST results are available for this feature:
BLAST of NO02G00080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30673.13.500e-11980.15hypothetical protein Naga_100091g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR068ncniR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006577NSK006577Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00080.1NO02G00080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609991gene_10166Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100091g6gene10Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00080.1NO02G00080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00080 ID=NO02G00080|Name=NO02G00080|organism=Nannochloropsis oceanica|type=gene|length=2700bp
GGTAATGGGTGGACTCTACGACAAGGAAAAGCAGGCATTTTCGACTCAAG
CAGGCTATGGCCATGAGGATAGCGTCTCATGTTGCCTTTATGCACCGTGT
ATATGTTTTGGGCGCGTGTACGGTGTGGAAGTGTTCGCCCTTCAATGCTT
GGCGATGCGAGCGCGCGCGCGACGCGGGCGGGAGAAAGTAGGGCACAAAG
CTCTTACGGTACGAAATGACTCGTCGGACGCGCACAAAAGACCACACAAA
TCACTCCCCCACACCACGCACAGTATGAGTTGTCTCTTTAAATACCGCTC
TATCCTAATGCATCGGAGCCAGAGCCTGGTAGTCTATCGGTGCTGCACTT
GCTCCCTCTACCACCAGCCTCCCGCCCGCTTTTTCTCACCACATGCGACC
GCCCTTCTAGCTACAACCACAACACACAGAGCTCACGAGACGACCAGCAC
CATGCACCCACACAGCCTTCTCCCGGGCTGTCTACTCCTACTCATCGTCT
CCTGTCTGTTGCTGACCGCGCAAGCGCAGgtgcgtttttgggcaaagatg
gagcgtgggaaggagggggaagctcttcatcctcgtcgtcgtgacctatt
gtggataccatcccatccaacgcgtgttcattcactcacgctacccttat
aactgtgatagTGGGGCATGGGGAAGAAGGCGAAGAAGGGCGACGGCGCA
GTGCGGCCTGAAGATGTGCAAGGCGgtgaggccatatgtttggtggaatg
gaggaaagagggaggaagagagggacagaggggtacacgcacattcatga
caccctccacttctctcacgctttgcctcagGTCTTTCCTTTGATGACAT
GCAGAAGATTGCCAAGCACTCGGGCGGgtacgtacacgtgcgggcggtcg
aagggttggggcatatgcgaatcttgtacaaatcctccctccctccctcc
ctccccccctccctccctccctccctccctccctccctccctccttttct
ccctccctcgcattgccttgactcgttacagGAAGAAGGAGATGGATCCA
TTCGAGCTGCTGAAGGCGATGGACATGGACCTGGGTAACGTCGATATGAA
GGCCATGGTCGAGGAGGCAATGAACgtacgtccccctccctccctccctc
cctctttccgtccctccctcccttcctcgcatgccacatggactcatttg
tccgccttcttaatctcataataaacagTCGCCAGAGGTTCTGGCCATGA
TGGAAGATCCAGCTCTTCTCAAAAAGGCGCTGCGGGAGTCACCGCTTTTT
GAGAATCTACCGGGCTTGGACAAgtgaggaagtgcgggattgagggagtg
gtggtggagagagtgggaagcattggataaaatgaggcgggtttggacga
atcagtgatggagatatcacacaaaactgagagcggatcaatcgctgtga
aggggagtatagaaagcgtgttgtacgagtgtattgatcccctcctcctt
ccttccttcctcccctccctctttccctccctccctcccacccttcctct
cactactccacgctcagAATTCTAGAAAGGCCCGAGATGGATGACCCTGA
GGCCCTAAAAGAGATTTTTCGCAAGGGCATGGACGATTTCAAGGAGgtaa
acacccctccctcagcccctccctccctccctccctccacggtccatcca
ctcgcccaaccatccctcccccctcgtccctcctctctcattctccagAT
TTCTGACACCATCATCGACCTGGTGAATGACGAGGGCAAGCGGGAGGAGA
TCATGACCGAGCTTCTCAAGAACCTAGACCCGGAGGAGCAGAAGgtaggc
aagcgagggagggaggaagggagggagggagggagggagggtgggagggc
gggagggcggagaagcaaggatgccttactgatgtggaccctctcttcat
tttcgacgcattgacagAAAATGAAGGCCCTGGTGAGCGGAGATGAAAAC
GCAGTGGAGGAGGCGGCGGCGAACCTGGCCGAGGTGTTTGCAAGCATGGG
CACTGAGgtggggagggagggaagagggagggagagagggtttgaataga
agcgagagagacataaatccctcacaacgcttgcgtgcttgactcattca
tccatccaccctctgtgtttgctcattcatcgacagTTCAAAAGGTCTCT
GGACGACCCCGACAAGATGGAGAAGGCCCGGCAGAACTTCCTCGAGAACG
AGgtgcgtgtgtccgtctgcatgtaaactaaggggagggaaaggagcaga
aaaagacgagaaagagggcgacttggattcagatgcatttaacgagcagc
taactcacaatccctctctctctctctgtcagGACTGGTTGGACACATTC
GAGGACCCAGATCTACGGGCAGCTGCCAGTGACCCCGACAAGTGGAAGGA
CATCATGCGGGAGAACGCCCGCCTCATGTACGGCTCGGCGGACGAGAAGA
AAAACGACGAGCTTTAGGTAATAATGACGGCCGGATGGAATACGGATGGA
AAGGAGGAGGCTAGAAGGGGAAAAGAATCTGACGTGTGTAGATAAAAAAA
AATCGAGGCACAGTGAAAGAAAGGATGACAGATGGGAGAAGAGACGTACA
ATCCCAGTCCCAAAGAGAAAGCAACAACAACTAACTCATATAGACGGCAT
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protein sequence of NO02G00080.1

>NO02G00080.1-protein ID=NO02G00080.1-protein|Name=NO02G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MGGLYDKEKQAFSTQAGYGHEDSVSCCLYAPCICFGRVYGVEVFALQCLA
MRARARRGREKVGHKALTVRNDSSDAHKRPHKSLPHTTHSMSCLFKYRSI
LMHRSQSLVVYRCCTCSLYHQPPARFFSPHATALLATTTTHRAHETTSTM
HPHSLLPGCLLLLIVSCLLLTAQAQWGMGKKAKKGDGAVRPEDVQGGLSF
DDMQKIAKHSGGKKEMDPFELLKAMDMDLGNVDMKAMVEEAMNSPEVLAM
MEDPALLKKALRESPLFENLPGLDKILERPEMDDPEALKEIFRKGMDDFK
EISDTIIDLVNDEGKREEIMTELLKNLDPEEQKKMKALVSGDENAVEEAA
ANLAEVFASMGTEFKRSLDDPDKMEKARQNFLENEDWLDTFEDPDLRAAA
SDPDKWKDIMRENARLMYGSADEKKNDEL*
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Synonyms
Publications