NO02G00080.1, NO02G00080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00080.1
Unique NameNO02G00080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1477
Alignment locationchr2:19880..22579 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:19880..22579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G00080.1 vs.
Match: EWM30673.1 (hypothetical protein Naga_100091g6 [Nannochloropsis gaditana])

HSP 1 Score: 438.0 bits (1125), Expect = 3.500e-119
Identity = 218/272 (80.15%), Postives = 255/272 (93.75%), Query Frame = 0
Query:  158 GCLLLLIVSCLLLTAQAQWGMGKKAKKGDGAVRPEDVQGGLSFDDMQKIAKHSGGKKEMDPFELLKAMDMDLGNVDMKAMVEEAMNSPEVLAMMEDPALLKKALRESPLFENLPGLDKILERPEMDDPEALKEIFRKGMDDFKEISDTIIDLVNDEGKREEIMTELLKNLDPEEQKKMKALVSGDENAVEEAAANLAEVFASMGTEFKRSLDDPDKMEKARQNFLENEDWLDTFEDPDLRAAASDPDKWKDIMRENARLMYGSADEKKNDEL 430
            G LLLL++SCLLL  QAQWGM KK KK DGAVRPEDVQGGLSFDDMQKIAKHSGGK+E++PF++LKAMD+D+G++DMK++VEEAMNSPE+ AMM+DP LLKKALRESPLFENLPGL+KILE+PE DDPE LKE+F+KGMD+FKE+SDTI+D+V+DEGKREE+M ELLKNLDP EQ+KMKAL++G+++A+EEAAANLAE+FA MG E KRSLDDP+KME AR+NFLENE+WL+TFEDPDLRAAASDPDKWKDIMRENARLMYGSADE KNDEL
Sbjct:    9 GRLLLLLLSCLLLIVQAQWGM-KKVKKEDGAVRPEDVQGGLSFDDMQKIAKHSGGKEELNPFDMLKAMDLDIGDLDMKSVVEEAMNSPEIQAMMDDPVLLKKALRESPLFENLPGLEKILEKPEFDDPEKLKELFQKGMDEFKEVSDTILDMVDDEGKREEVMAELLKNLDPSEQRKMKALLAGEDDAIEEAAANLAEIFAGMGNELKRSLDDPEKMENARKNFLENEEWLNTFEDPDLRAAASDPDKWKDIMRENARLMYGSADE-KNDEL 278          
The following BLAST results are available for this feature:
BLAST of NO02G00080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30673.13.500e-11980.15hypothetical protein Naga_100091g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00080NO02G00080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00080.1NO02G00080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00080.1.cds1NO02G00080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00080.1.cds2NO02G00080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00080.1.cds3NO02G00080.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00080.1.cds4NO02G00080.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00080.1.cds5NO02G00080.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00080.1.cds6NO02G00080.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00080.1.cds7NO02G00080.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00080.1.cds8NO02G00080.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00080.1.cds9NO02G00080.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00080.1.cds10NO02G00080.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00080.1 ID=NO02G00080.1|Name=NO02G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1477bp
GGTAATGGGTGGACTCTACGACAAGGAAAAGCAGGCATTTTCGACTCAAG
CAGGCTATGGCCATGAGGATAGCGTCTCATGTTGCCTTTATGCACCGTGT
ATATGTTTTGGGCGCGTGTACGGTGTGGAAGTGTTCGCCCTTCAATGCTT
GGCGATGCGAGCGCGCGCGCGACGCGGGCGGGAGAAAGTAGGGCACAAAG
CTCTTACGGTACGAAATGACTCGTCGGACGCGCACAAAAGACCACACAAA
TCACTCCCCCACACCACGCACAGTATGAGTTGTCTCTTTAAATACCGCTC
TATCCTAATGCATCGGAGCCAGAGCCTGGTAGTCTATCGGTGCTGCACTT
GCTCCCTCTACCACCAGCCTCCCGCCCGCTTTTTCTCACCACATGCGACC
GCCCTTCTAGCTACAACCACAACACACAGAGCTCACGAGACGACCAGCAC
CATGCACCCACACAGCCTTCTCCCGGGCTGTCTACTCCTACTCATCGTCT
CCTGTCTGTTGCTGACCGCGCAAGCGCAGTGGGGCATGGGGAAGAAGGCG
AAGAAGGGCGACGGCGCAGTGCGGCCTGAAGATGTGCAAGGCGGTCTTTC
CTTTGATGACATGCAGAAGATTGCCAAGCACTCGGGCGGGAAGAAGGAGA
TGGATCCATTCGAGCTGCTGAAGGCGATGGACATGGACCTGGGTAACGTC
GATATGAAGGCCATGGTCGAGGAGGCAATGAACTCGCCAGAGGTTCTGGC
CATGATGGAAGATCCAGCTCTTCTCAAAAAGGCGCTGCGGGAGTCACCGC
TTTTTGAGAATCTACCGGGCTTGGACAAAATTCTAGAAAGGCCCGAGATG
GATGACCCTGAGGCCCTAAAAGAGATTTTTCGCAAGGGCATGGACGATTT
CAAGGAGATTTCTGACACCATCATCGACCTGGTGAATGACGAGGGCAAGC
GGGAGGAGATCATGACCGAGCTTCTCAAGAACCTAGACCCGGAGGAGCAG
AAGAAAATGAAGGCCCTGGTGAGCGGAGATGAAAACGCAGTGGAGGAGGC
GGCGGCGAACCTGGCCGAGGTGTTTGCAAGCATGGGCACTGAGTTCAAAA
GGTCTCTGGACGACCCCGACAAGATGGAGAAGGCCCGGCAGAACTTCCTC
GAGAACGAGGACTGGTTGGACACATTCGAGGACCCAGATCTACGGGCAGC
TGCCAGTGACCCCGACAAGTGGAAGGACATCATGCGGGAGAACGCCCGCC
TCATGTACGGCTCGGCGGACGAGAAGAAAAACGACGAGCTTTAGGTAATA
ATGACGGCCGGATGGAATACGGATGGAAAGGAGGAGGCTAGAAGGGGAAA
AGAATCTGACGTGTGTAGATAAAAAAAAATCGAGGCACAGTGAAAGAAAG
GATGACAGATGGGAGAAGAGACGTACAATCCCAGTCCCAAAGAGAAAGCA
ACAACAACTAACTCATATAGACGGCAT
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protein sequence of NO02G00080.1

>NO02G00080.1-protein ID=NO02G00080.1-protein|Name=NO02G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MGGLYDKEKQAFSTQAGYGHEDSVSCCLYAPCICFGRVYGVEVFALQCLA
MRARARRGREKVGHKALTVRNDSSDAHKRPHKSLPHTTHSMSCLFKYRSI
LMHRSQSLVVYRCCTCSLYHQPPARFFSPHATALLATTTTHRAHETTSTM
HPHSLLPGCLLLLIVSCLLLTAQAQWGMGKKAKKGDGAVRPEDVQGGLSF
DDMQKIAKHSGGKKEMDPFELLKAMDMDLGNVDMKAMVEEAMNSPEVLAM
MEDPALLKKALRESPLFENLPGLDKILERPEMDDPEALKEIFRKGMDDFK
EISDTIIDLVNDEGKREEIMTELLKNLDPEEQKKMKALVSGDENAVEEAA
ANLAEVFASMGTEFKRSLDDPDKMEKARQNFLENEDWLDTFEDPDLRAAA
SDPDKWKDIMRENARLMYGSADEKKNDEL*
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mRNA from alignment at chr2:19880..22579-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00080.1 ID=NO02G00080.1|Name=NO02G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2700bp|location=Sequence derived from alignment at chr2:19880..22579- (Nannochloropsis oceanica)
GGTAATGGGTGGACTCTACGACAAGGAAAAGCAGGCATTTTCGACTCAAG CAGGCTATGGCCATGAGGATAGCGTCTCATGTTGCCTTTATGCACCGTGT ATATGTTTTGGGCGCGTGTACGGTGTGGAAGTGTTCGCCCTTCAATGCTT GGCGATGCGAGCGCGCGCGCGACGCGGGCGGGAGAAAGTAGGGCACAAAG CTCTTACGGTACGAAATGACTCGTCGGACGCGCACAAAAGACCACACAAA TCACTCCCCCACACCACGCACAGTATGAGTTGTCTCTTTAAATACCGCTC TATCCTAATGCATCGGAGCCAGAGCCTGGTAGTCTATCGGTGCTGCACTT GCTCCCTCTACCACCAGCCTCCCGCCCGCTTTTTCTCACCACATGCGACC GCCCTTCTAGCTACAACCACAACACACAGAGCTCACGAGACGACCAGCAC CATGCACCCACACAGCCTTCTCCCGGGCTGTCTACTCCTACTCATCGTCT CCTGTCTGTTGCTGACCGCGCAAGCGCAGGTGCGTTTTTGGGCAAAGATG GAGCGTGGGAAGGAGGGGGAAGCTCTTCATCCTCGTCGTCGTGACCTATT GTGGATACCATCCCATCCAACGCGTGTTCATTCACTCACGCTACCCTTAT AACTGTGATAGTGGGGCATGGGGAAGAAGGCGAAGAAGGGCGACGGCGCA GTGCGGCCTGAAGATGTGCAAGGCGGTGAGGCCATATGTTTGGTGGAATG GAGGAAAGAGGGAGGAAGAGAGGGACAGAGGGGTACACGCACATTCATGA CACCCTCCACTTCTCTCACGCTTTGCCTCAGGTCTTTCCTTTGATGACAT GCAGAAGATTGCCAAGCACTCGGGCGGGTACGTACACGTGCGGGCGGTCG AAGGGTTGGGGCATATGCGAATCTTGTACAAATCCTCCCTCCCTCCCTCC CTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTTCT CCCTCCCTCGCATTGCCTTGACTCGTTACAGGAAGAAGGAGATGGATCCA TTCGAGCTGCTGAAGGCGATGGACATGGACCTGGGTAACGTCGATATGAA GGCCATGGTCGAGGAGGCAATGAACGTACGTCCCCCTCCCTCCCTCCCTC CCTCTTTCCGTCCCTCCCTCCCTTCCTCGCATGCCACATGGACTCATTTG TCCGCCTTCTTAATCTCATAATAAACAGTCGCCAGAGGTTCTGGCCATGA TGGAAGATCCAGCTCTTCTCAAAAAGGCGCTGCGGGAGTCACCGCTTTTT GAGAATCTACCGGGCTTGGACAAGTGAGGAAGTGCGGGATTGAGGGAGTG GTGGTGGAGAGAGTGGGAAGCATTGGATAAAATGAGGCGGGTTTGGACGA ATCAGTGATGGAGATATCACACAAAACTGAGAGCGGATCAATCGCTGTGA AGGGGAGTATAGAAAGCGTGTTGTACGAGTGTATTGATCCCCTCCTCCTT CCTTCCTTCCTCCCCTCCCTCTTTCCCTCCCTCCCTCCCACCCTTCCTCT CACTACTCCACGCTCAGAATTCTAGAAAGGCCCGAGATGGATGACCCTGA GGCCCTAAAAGAGATTTTTCGCAAGGGCATGGACGATTTCAAGGAGGTAA ACACCCCTCCCTCAGCCCCTCCCTCCCTCCCTCCCTCCACGGTCCATCCA CTCGCCCAACCATCCCTCCCCCCTCGTCCCTCCTCTCTCATTCTCCAGAT TTCTGACACCATCATCGACCTGGTGAATGACGAGGGCAAGCGGGAGGAGA TCATGACCGAGCTTCTCAAGAACCTAGACCCGGAGGAGCAGAAGGTAGGC AAGCGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGTGGGAGGGC GGGAGGGCGGAGAAGCAAGGATGCCTTACTGATGTGGACCCTCTCTTCAT TTTCGACGCATTGACAGAAAATGAAGGCCCTGGTGAGCGGAGATGAAAAC GCAGTGGAGGAGGCGGCGGCGAACCTGGCCGAGGTGTTTGCAAGCATGGG CACTGAGGTGGGGAGGGAGGGAAGAGGGAGGGAGAGAGGGTTTGAATAGA AGCGAGAGAGACATAAATCCCTCACAACGCTTGCGTGCTTGACTCATTCA TCCATCCACCCTCTGTGTTTGCTCATTCATCGACAGTTCAAAAGGTCTCT GGACGACCCCGACAAGATGGAGAAGGCCCGGCAGAACTTCCTCGAGAACG AGGTGCGTGTGTCCGTCTGCATGTAAACTAAGGGGAGGGAAAGGAGCAGA AAAAGACGAGAAAGAGGGCGACTTGGATTCAGATGCATTTAACGAGCAGC TAACTCACAATCCCTCTCTCTCTCTCTGTCAGGACTGGTTGGACACATTC GAGGACCCAGATCTACGGGCAGCTGCCAGTGACCCCGACAAGTGGAAGGA CATCATGCGGGAGAACGCCCGCCTCATGTACGGCTCGGCGGACGAGAAGA AAAACGACGAGCTTTAGGTAATAATGACGGCCGGATGGAATACGGATGGA AAGGAGGAGGCTAGAAGGGGAAAAGAATCTGACGTGTGTAGATAAAAAAA AATCGAGGCACAGTGAAAGAAAGGATGACAGATGGGAGAAGAGACGTACA ATCCCAGTCCCAAAGAGAAAGCAACAACAACTAACTCATATAGACGGCAT
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Coding sequence (CDS) from alignment at chr2:19880..22579-

>NO02G00080.1 ID=NO02G00080.1|Name=NO02G00080.1|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr2:19880..22579- (Nannochloropsis oceanica)
ATGGGTGGACTCTACGACAAGGAAAAGCAGGCATTTTCGACTCAAGCAGG
CTATGGCCATGAGGATAGCGTCTCATGTTGCCTTTATGCACCGTGTATAT
GTTTTGGGCGCGTGTACGGTGTGGAAGTGTTCGCCCTTCAATGCTTGGCG
ATGCGAGCGCGCGCGCGACGCGGGCGGGAGAAAGTAGGGCACAAAGCTCT
TACGGTACGAAATGACTCGTCGGACGCGCACAAAAGACCACACAAATCAC
TCCCCCACACCACGCACAGTATGAGTTGTCTCTTTAAATACCGCTCTATC
CTAATGCATCGGAGCCAGAGCCTGGTAGTCTATCGGTGCTGCACTTGCTC
CCTCTACCACCAGCCTCCCGCCCGCTTTTTCTCACCACATGCGACCGCCC
TTCTAGCTACAACCACAACACACAGAGCTCACGAGACGACCAGCACCATG
CACCCACACAGCCTTCTCCCGGGCTGTCTACTCCTACTCATCGTCTCCTG
TCTGTTGCTGACCGCGCAAGCGCAGTGGGGCATGGGGAAGAAGGCGAAGA
AGGGCGACGGCGCAGTGCGGCCTGAAGATGTGCAAGGCGGTCTTTCCTTT
GATGACATGCAGAAGATTGCCAAGCACTCGGGCGGGAAGAAGGAGATGGA
TCCATTCGAGCTGCTGAAGGCGATGGACATGGACCTGGGTAACGTCGATA
TGAAGGCCATGGTCGAGGAGGCAATGAACTCGCCAGAGGTTCTGGCCATG
ATGGAAGATCCAGCTCTTCTCAAAAAGGCGCTGCGGGAGTCACCGCTTTT
TGAGAATCTACCGGGCTTGGACAAAATTCTAGAAAGGCCCGAGATGGATG
ACCCTGAGGCCCTAAAAGAGATTTTTCGCAAGGGCATGGACGATTTCAAG
GAGATTTCTGACACCATCATCGACCTGGTGAATGACGAGGGCAAGCGGGA
GGAGATCATGACCGAGCTTCTCAAGAACCTAGACCCGGAGGAGCAGAAGA
AAATGAAGGCCCTGGTGAGCGGAGATGAAAACGCAGTGGAGGAGGCGGCG
GCGAACCTGGCCGAGGTGTTTGCAAGCATGGGCACTGAGTTCAAAAGGTC
TCTGGACGACCCCGACAAGATGGAGAAGGCCCGGCAGAACTTCCTCGAGA
ACGAGGACTGGTTGGACACATTCGAGGACCCAGATCTACGGGCAGCTGCC
AGTGACCCCGACAAGTGGAAGGACATCATGCGGGAGAACGCCCGCCTCAT
GTACGGCTCGGCGGACGAGAAGAAAAACGACGAGCTTTAG
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Synonyms
Publications