NO02G00070, NO02G00070 (gene) Nannochloropsis oceanica

Overview
NameNO02G00070
Unique NameNO02G00070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1293
Alignment locationchr2:16745..18037 -

Link to JBrowse

Properties
Property NameValue
DescriptionNLR family CARD domain-containing protein 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:16745..18037 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Homology
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BLAST of NO02G00070 vs. NCBI_GenBank
Match: XP_005855492.1 (hypothetical protein NGA_2066510 [Nannochloropsis gaditana CCMP526] >XP_005855663.1 hypothetical protein NGA_2066520 [Nannochloropsis gaditana CCMP526] >EKU20695.1 hypothetical protein NGA_2066520 [Nannochloropsis gaditana CCMP526] >EKU20867.1 hypothetical protein NGA_2066510 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 336.3 bits (861), Expect = 1.400e-88
Identity = 254/414 (61.35%), Postives = 295/414 (71.26%), Query Frame = 0 
Query:   27 LPTLPHALLYEICAYMWPGDVARLTSAARGLGAAQDENG-TNLISNGMSFFRPSKQLTVVVVEDIITRRLPFCKALRVLDLSSAELTPNIILTLGRLAAEEGNFFQTVRSLNLFDNKLRSEGCLALAQALERGGFRSGLQGLYVRANQI---GGDDYGG---------GGGEGEDHIAVLCEVLKCGACSAPLTSLSLAQNDLGTIAALHIGGALGSISLKRLLKLDLHLNQLGDCGATSVAEGLAAGGGMPCLDEFYLGFNGIGDTGARAVADCLAHXXXXXXXXXXXXXXXXXXXXXXXXXXSVEGGKMRTARAAAVSTMSTTAMLQXXXXXXXXXXXXXXXXXXXXXXXATETTDGGLGGEEGNGGQMGEVEGGCPNLANIFLDDNRAIRARGREALQALQIIRGIVCIEG 428
            LP LP A+LYE+CAY+WP D++ L S AR L A +DENG +NL+ NG+SFFRP+K L   VVED+I R LP C+AL++LDLSSAELTP+I+LTLGRLAA  G  FQ V SL+L+DN L SEGCLALA+AL +GGF S L+G+Y+RANQI     DD G            G   D + VLC+VLK G  SA LTSLSLAQN+LG ++A++IG AL + +LKRL KLDLHLN+LGD G  S+AEG++AGGGMPCLDE YLG+N IGD GARAVA CL  XXXXXXXXXXXXXXXXXXXXXX    S +GG+    R + V          XXXXXXXXXXXXXXXXXXXXXXX      GG   EE  G         CP L NIFLD NRAIRARGR ALQ LQ  RGI C+EG
Sbjct:   18 LPNLPAAVLYELCAYLWPRDISYLVSTARNL-AFKDENGRSNLVGNGLSFFRPTKPLPAAVVEDLIARHLPPCRALQILDLSSAELTPSILLTLGRLAAVNG-VFQCVSSLSLWDNNLGSEGCLALAEALGQGGFHSHLRGIYIRANQITCDSDDDVGMAIDEAIGRLAVGGARDSVGVLCQVLKTGVPSALLTSLSLAQNNLGHLSAMYIGDALAAPALKRLRKLDLHLNRLGDRGVASLAEGISAGGGMPCLDELYLGYNKIGDAGARAVAGCLEXXXXXXXXXXXXXXXXXXXXXXXAMHLS-DGGR-DEERISHVRPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMGGGRTEEEKIGLY-------CPKLLNIFLDQNRAIRARGRNALQVLQTTRGIRCMEG 420
The following BLAST results are available for this feature:
BLAST of NO02G00070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855492.11.400e-8861.35hypothetical protein NGA_2066510 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR068ncniR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006574NSK006574Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00070.1NO02G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00070.1NO02G00070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00070 ID=NO02G00070|Name=NO02G00070|organism=Nannochloropsis oceanica|type=gene|length=1293bp
ATGAGCTTACCGTCACCACCACTTTTTCTTCCTACTCCTTTCGCTCGAGC
AGCACCAATACCTCCACGTCTCGTCGCCCTGCCCACCCTCCCCCATGCTC
TCCTTTATGAGATCTGCGCTTACATGTGGCCAGGAGATGTGGCTCGCTTG
ACCTCGGCAGCTCGGGGGTTGGGTGCCGCACAGGACGAAAATGGGACCAA
TTTGATATCGAACGGCATGTCCTTCTTCCGTCCATCGAAGCAATTAACTG
TGGTCGTCGTTGAAGACATCATCACGCGTCGCTTGCCATTTTGTAAAGCC
CTTCGCGTCTTGGACTTATCCTCAGCCGAGCTTACTCCCAATATTATCCT
TACATTGGGGCGCCTAGCCGCGGAGGAGGGCAATTTTTTCCAAACGGTAC
GTTCCCTCAATCTGTTCGATAACAAGCTGAGAAGCGAGGGATGCCTTGCT
CTGGCACAGGCCCTAGAGCGAGGGGGGTTTCGCTCTGGTTTGCAAGGGCT
CTACGTGCGTGCCAATCAAATCGGGGGCGACGACTATGGAGGCGGTGGTG
GGGAGGGAGAAGATCATATTGCCGTTTTATGTGAGGTCCTGAAATGCGGG
GCCTGCAGTGCACCATTGACCTCTCTCAGCCTCGCGCAAAATGATCTGGG
CACCATTGCCGCCTTGCACATAGGAGGTGCTCTCGGCTCTATTTCCTTAA
AGAGGCTGCTGAAGCTTGACTTGCACCTGAATCAATTGGGCGACTGCGGG
GCCACGTCGGTGGCGGAGGGACTGGCTGCGGGAGGTGGCATGCCGTGTCT
GGACGAATTTTATCTTGGATTTAATGGCATTGGCGACACAGGGGCGAGGG
CCGTGGCTGATTGCCTGGCTCACATGCCCATGCTGCGGGAGCTAGATTTG
GCTTGCAATGCCATCGGAAACGAAGGAGCGCTTGCCCTTGCGGAGCGCTT
GTCAGTCGAGGGAGGAAAGATGAGGACGGCCCGAGCTGCTGCAGTAAGTA
CGATGAGCACAACTGCTATGCTGCAGCTGGAGACATTGGATCTGCGAGGG
AATAGGATAGGAGATGATGGGGCCTGTGCTTTTAGGGACTTTCTGGCGAC
GGAAACCACGGACGGAGGGTTGGGGGGGGAGGAAGGCAACGGGGGCCAGA
TGGGAGAAGTTGAAGGGGGCTGTCCAAATTTGGCCAATATATTTCTGGAT
GACAACCGTGCCATTCGCGCGCGGGGACGTGAAGCATTGCAAGCGCTGCA
GATCATTAGGGGGATCGTGTGCATAGAAGGACCGAATTGTTGA
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protein sequence of NO02G00070.1

>NO02G00070.1-protein ID=NO02G00070.1-protein|Name=NO02G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MSLPSPPLFLPTPFARAAPIPPRLVALPTLPHALLYEICAYMWPGDVARL
TSAARGLGAAQDENGTNLISNGMSFFRPSKQLTVVVVEDIITRRLPFCKA
LRVLDLSSAELTPNIILTLGRLAAEEGNFFQTVRSLNLFDNKLRSEGCLA
LAQALERGGFRSGLQGLYVRANQIGGDDYGGGGGEGEDHIAVLCEVLKCG
ACSAPLTSLSLAQNDLGTIAALHIGGALGSISLKRLLKLDLHLNQLGDCG
ATSVAEGLAAGGGMPCLDEFYLGFNGIGDTGARAVADCLAHMPMLRELDL
ACNAIGNEGALALAERLSVEGGKMRTARAAAVSTMSTTAMLQLETLDLRG
NRIGDDGACAFRDFLATETTDGGLGGEEGNGGQMGEVEGGCPNLANIFLD
DNRAIRARGREALQALQIIRGIVCIEGPNC*
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Synonyms
Publications