NO02G00070.1, NO02G00070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00070.1
Unique NameNO02G00070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1293
Alignment locationchr2:16745..18037 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:16745..18037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00070.1 vs.
Match: XP_005855492.1 (hypothetical protein NGA_2066510 [Nannochloropsis gaditana CCMP526]; XP_005855663.1 hypothetical protein NGA_2066520 [Nannochloropsis gaditana CCMP526]; EKU20695.1 hypothetical protein NGA_2066520 [Nannochloropsis gaditana CCMP526]; EKU20867.1 hypothetical protein NGA_2066510 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 431.8 bits (1109), Expect = 2.500e-117
Identity = 248/415 (59.76%), Postives = 294/415 (70.84%), Query Frame = 0 
Query:   27 LPTLPHALLYEICAYMWPGDVARLTSAARGLGAAQDENG-TNLISNGMSFFRPSKQLTVVVVEDIITRRLPFCKALRVLDLSSAELTPNIILTLGRLAAEEGNFFQTVRSLNLFDNKLRSEGCLALAQALERGGFRSGLQGLYVRANQIGGDDYGGGG------------GEGEDHIAVLCEVLKCGACSAPLTSLSLAQNDLGTIAALHIGGALGSISLKRLLKLDLHLNQLGDCGATSVAEGLAAGGGMPCLDEFYLGFNGIGDTGARAVADCLAHMPMLRELDLACNAIGNEGALALAERLSVEGGKMRTARAAAVSTMSTTAMLQLETLDLRGNRIGDDGACAFRDFLA-TETTDGGLGGEEGNGGQMGEVEGGCPNLANIFLDDNRAIRARGREALQALQIIRGIVCIEG 428
            LP LP A+LYE+CAY+WP D++ L S AR L A +DENG +NL+ NG+SFFRP+K L   VVED+I R LP C+AL++LDLSSAELTP+I+LTLGRLAA  G  FQ V SL+L+DN L SEGCLALA+AL +GGF S L+G+Y+RANQI  D     G            G   D + VLC+VLK G  SA LTSLSLAQN+LG ++A++IG AL + +LKRL KLDLHLN+LGD G  S+AEG++AGGGMPCLDE YLG+N IGD GARAVA CL  M +LRELDLA NAIGNEGALA A  LS +GG+                 L LETLDL+ NRIGDDGACAFRDFLA     + G+GG      ++G     CP L NIFLD NRAIRARGR ALQ LQ  RGI C+EG
Sbjct:   18 LPNLPAAVLYELCAYLWPRDISYLVSTARNL-AFKDENGRSNLVGNGLSFFRPTKPLPAAVVEDLIARHLPPCRALQILDLSSAELTPSILLTLGRLAAVNG-VFQCVSSLSLWDNNLGSEGCLALAEALGQGGFHSHLRGIYIRANQITCDSDDDVGMAIDEAIGRLAVGGARDSVGVLCQVLKTGVPSALLTSLSLAQNNLGHLSAMYIGDALAAPALKRLRKLDLHLNRLGDRGVASLAEGISAGGGMPCLDELYLGYNKIGDAGARAVAGCLEGMVVLRELDLASNAIGNEGALAFAMHLS-DGGRDEE------RISHVRPRLLLETLDLKENRIGDDGACAFRDFLACAGEHESGMGGGRTEEEKIGLY---CPKLLNIFLDQNRAIRARGRNALQVLQTTRGIRCMEG 420
The following BLAST results are available for this feature:
BLAST of NO02G00070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855492.12.500e-11759.76hypothetical protein NGA_2066510 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00070NO02G00070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00070.1NO02G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00070.1.cds1NO02G00070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00070.1 ID=NO02G00070.1|Name=NO02G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp
ATGAGCTTACCGTCACCACCACTTTTTCTTCCTACTCCTTTCGCTCGAGC
AGCACCAATACCTCCACGTCTCGTCGCCCTGCCCACCCTCCCCCATGCTC
TCCTTTATGAGATCTGCGCTTACATGTGGCCAGGAGATGTGGCTCGCTTG
ACCTCGGCAGCTCGGGGGTTGGGTGCCGCACAGGACGAAAATGGGACCAA
TTTGATATCGAACGGCATGTCCTTCTTCCGTCCATCGAAGCAATTAACTG
TGGTCGTCGTTGAAGACATCATCACGCGTCGCTTGCCATTTTGTAAAGCC
CTTCGCGTCTTGGACTTATCCTCAGCCGAGCTTACTCCCAATATTATCCT
TACATTGGGGCGCCTAGCCGCGGAGGAGGGCAATTTTTTCCAAACGGTAC
GTTCCCTCAATCTGTTCGATAACAAGCTGAGAAGCGAGGGATGCCTTGCT
CTGGCACAGGCCCTAGAGCGAGGGGGGTTTCGCTCTGGTTTGCAAGGGCT
CTACGTGCGTGCCAATCAAATCGGGGGCGACGACTATGGAGGCGGTGGTG
GGGAGGGAGAAGATCATATTGCCGTTTTATGTGAGGTCCTGAAATGCGGG
GCCTGCAGTGCACCATTGACCTCTCTCAGCCTCGCGCAAAATGATCTGGG
CACCATTGCCGCCTTGCACATAGGAGGTGCTCTCGGCTCTATTTCCTTAA
AGAGGCTGCTGAAGCTTGACTTGCACCTGAATCAATTGGGCGACTGCGGG
GCCACGTCGGTGGCGGAGGGACTGGCTGCGGGAGGTGGCATGCCGTGTCT
GGACGAATTTTATCTTGGATTTAATGGCATTGGCGACACAGGGGCGAGGG
CCGTGGCTGATTGCCTGGCTCACATGCCCATGCTGCGGGAGCTAGATTTG
GCTTGCAATGCCATCGGAAACGAAGGAGCGCTTGCCCTTGCGGAGCGCTT
GTCAGTCGAGGGAGGAAAGATGAGGACGGCCCGAGCTGCTGCAGTAAGTA
CGATGAGCACAACTGCTATGCTGCAGCTGGAGACATTGGATCTGCGAGGG
AATAGGATAGGAGATGATGGGGCCTGTGCTTTTAGGGACTTTCTGGCGAC
GGAAACCACGGACGGAGGGTTGGGGGGGGAGGAAGGCAACGGGGGCCAGA
TGGGAGAAGTTGAAGGGGGCTGTCCAAATTTGGCCAATATATTTCTGGAT
GACAACCGTGCCATTCGCGCGCGGGGACGTGAAGCATTGCAAGCGCTGCA
GATCATTAGGGGGATCGTGTGCATAGAAGGACCGAATTGTTGA
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protein sequence of NO02G00070.1

>NO02G00070.1-protein ID=NO02G00070.1-protein|Name=NO02G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MSLPSPPLFLPTPFARAAPIPPRLVALPTLPHALLYEICAYMWPGDVARL
TSAARGLGAAQDENGTNLISNGMSFFRPSKQLTVVVVEDIITRRLPFCKA
LRVLDLSSAELTPNIILTLGRLAAEEGNFFQTVRSLNLFDNKLRSEGCLA
LAQALERGGFRSGLQGLYVRANQIGGDDYGGGGGEGEDHIAVLCEVLKCG
ACSAPLTSLSLAQNDLGTIAALHIGGALGSISLKRLLKLDLHLNQLGDCG
ATSVAEGLAAGGGMPCLDEFYLGFNGIGDTGARAVADCLAHMPMLRELDL
ACNAIGNEGALALAERLSVEGGKMRTARAAAVSTMSTTAMLQLETLDLRG
NRIGDDGACAFRDFLATETTDGGLGGEEGNGGQMGEVEGGCPNLANIFLD
DNRAIRARGREALQALQIIRGIVCIEGPNC*
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mRNA from alignment at chr2:16745..18037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00070.1 ID=NO02G00070.1|Name=NO02G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp|location=Sequence derived from alignment at chr2:16745..18037- (Nannochloropsis oceanica)
ATGAGCTTACCGTCACCACCACTTTTTCTTCCTACTCCTTTCGCTCGAGC
AGCACCAATACCTCCACGTCTCGTCGCCCTGCCCACCCTCCCCCATGCTC
TCCTTTATGAGATCTGCGCTTACATGTGGCCAGGAGATGTGGCTCGCTTG
ACCTCGGCAGCTCGGGGGTTGGGTGCCGCACAGGACGAAAATGGGACCAA
TTTGATATCGAACGGCATGTCCTTCTTCCGTCCATCGAAGCAATTAACTG
TGGTCGTCGTTGAAGACATCATCACGCGTCGCTTGCCATTTTGTAAAGCC
CTTCGCGTCTTGGACTTATCCTCAGCCGAGCTTACTCCCAATATTATCCT
TACATTGGGGCGCCTAGCCGCGGAGGAGGGCAATTTTTTCCAAACGGTAC
GTTCCCTCAATCTGTTCGATAACAAGCTGAGAAGCGAGGGATGCCTTGCT
CTGGCACAGGCCCTAGAGCGAGGGGGGTTTCGCTCTGGTTTGCAAGGGCT
CTACGTGCGTGCCAATCAAATCGGGGGCGACGACTATGGAGGCGGTGGTG
GGGAGGGAGAAGATCATATTGCCGTTTTATGTGAGGTCCTGAAATGCGGG
GCCTGCAGTGCACCATTGACCTCTCTCAGCCTCGCGCAAAATGATCTGGG
CACCATTGCCGCCTTGCACATAGGAGGTGCTCTCGGCTCTATTTCCTTAA
AGAGGCTGCTGAAGCTTGACTTGCACCTGAATCAATTGGGCGACTGCGGG
GCCACGTCGGTGGCGGAGGGACTGGCTGCGGGAGGTGGCATGCCGTGTCT
GGACGAATTTTATCTTGGATTTAATGGCATTGGCGACACAGGGGCGAGGG
CCGTGGCTGATTGCCTGGCTCACATGCCCATGCTGCGGGAGCTAGATTTG
GCTTGCAATGCCATCGGAAACGAAGGAGCGCTTGCCCTTGCGGAGCGCTT
GTCAGTCGAGGGAGGAAAGATGAGGACGGCCCGAGCTGCTGCAGTAAGTA
CGATGAGCACAACTGCTATGCTGCAGCTGGAGACATTGGATCTGCGAGGG
AATAGGATAGGAGATGATGGGGCCTGTGCTTTTAGGGACTTTCTGGCGAC
GGAAACCACGGACGGAGGGTTGGGGGGGGAGGAAGGCAACGGGGGCCAGA
TGGGAGAAGTTGAAGGGGGCTGTCCAAATTTGGCCAATATATTTCTGGAT
GACAACCGTGCCATTCGCGCGCGGGGACGTGAAGCATTGCAAGCGCTGCA
GATCATTAGGGGGATCGTGTGCATAGAAGGACCGAATTGTTGA
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Coding sequence (CDS) from alignment at chr2:16745..18037-

>NO02G00070.1 ID=NO02G00070.1|Name=NO02G00070.1|organism=Nannochloropsis oceanica|type=CDS|length=1293bp|location=Sequence derived from alignment at chr2:16745..18037- (Nannochloropsis oceanica)
ATGAGCTTACCGTCACCACCACTTTTTCTTCCTACTCCTTTCGCTCGAGC
AGCACCAATACCTCCACGTCTCGTCGCCCTGCCCACCCTCCCCCATGCTC
TCCTTTATGAGATCTGCGCTTACATGTGGCCAGGAGATGTGGCTCGCTTG
ACCTCGGCAGCTCGGGGGTTGGGTGCCGCACAGGACGAAAATGGGACCAA
TTTGATATCGAACGGCATGTCCTTCTTCCGTCCATCGAAGCAATTAACTG
TGGTCGTCGTTGAAGACATCATCACGCGTCGCTTGCCATTTTGTAAAGCC
CTTCGCGTCTTGGACTTATCCTCAGCCGAGCTTACTCCCAATATTATCCT
TACATTGGGGCGCCTAGCCGCGGAGGAGGGCAATTTTTTCCAAACGGTAC
GTTCCCTCAATCTGTTCGATAACAAGCTGAGAAGCGAGGGATGCCTTGCT
CTGGCACAGGCCCTAGAGCGAGGGGGGTTTCGCTCTGGTTTGCAAGGGCT
CTACGTGCGTGCCAATCAAATCGGGGGCGACGACTATGGAGGCGGTGGTG
GGGAGGGAGAAGATCATATTGCCGTTTTATGTGAGGTCCTGAAATGCGGG
GCCTGCAGTGCACCATTGACCTCTCTCAGCCTCGCGCAAAATGATCTGGG
CACCATTGCCGCCTTGCACATAGGAGGTGCTCTCGGCTCTATTTCCTTAA
AGAGGCTGCTGAAGCTTGACTTGCACCTGAATCAATTGGGCGACTGCGGG
GCCACGTCGGTGGCGGAGGGACTGGCTGCGGGAGGTGGCATGCCGTGTCT
GGACGAATTTTATCTTGGATTTAATGGCATTGGCGACACAGGGGCGAGGG
CCGTGGCTGATTGCCTGGCTCACATGCCCATGCTGCGGGAGCTAGATTTG
GCTTGCAATGCCATCGGAAACGAAGGAGCGCTTGCCCTTGCGGAGCGCTT
GTCAGTCGAGGGAGGAAAGATGAGGACGGCCCGAGCTGCTGCAGTAAGTA
CGATGAGCACAACTGCTATGCTGCAGCTGGAGACATTGGATCTGCGAGGG
AATAGGATAGGAGATGATGGGGCCTGTGCTTTTAGGGACTTTCTGGCGAC
GGAAACCACGGACGGAGGGTTGGGGGGGGAGGAAGGCAACGGGGGCCAGA
TGGGAGAAGTTGAAGGGGGCTGTCCAAATTTGGCCAATATATTTCTGGAT
GACAACCGTGCCATTCGCGCGCGGGGACGTGAAGCATTGCAAGCGCTGCA
GATCATTAGGGGGATCGTGTGCATAGAAGGACCGAATTGTTGA
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Synonyms
Publications