NO02G00040, NO02G00040 (gene) Nannochloropsis oceanica

Overview
NameNO02G00040
Unique NameNO02G00040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2138
Alignment locationchr2:11113..13250 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:11113..13250 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO02G00040 vs. NCBI_GenBank
Match: EWM30666.1 (hypothetical protein Naga_100091g11 [Nannochloropsis gaditana])

HSP 1 Score: 256.9 bits (655), Expect = 7.800e-65
Identity = 144/273 (52.75%), Postives = 174/273 (63.74%), Query Frame = 0 
Query:   44 MTCKSCISRFFGILGSNIFFIALVAFAVAVSTNQWTVSHQRGVDVKGVLTDADMEFGIFDMLASVRQGEEVIWSQYSYNWCDSLDVRDPNAPWTGDTTYCNMLLTAQVCTIICLATXXXXXXXXXXXXXXXXVSKSFRDIACASSFFMLVQFASALITFACMFGINSKINRNLDHTFPGLAVTPSYSAALAVLSAGLVLLGFITTFILGRCGKERPTEA----DEDEEKDEEVGTTAPQSAENKKSGA-TDEPAWSR---------EELKVSQ 303
            M+CK+C+ +FFGILGSNIFF+ALVA   AV T +W VS QR V V G+ T+AD++FGIFDM A V Q  +V WSQYSY WC++ +  D  APWT +  YCN+LLTAQ C+II LAT                V+K FR+IACASSFFMLVQF SAL+TFAC FGIN+KIN +LD  FPG+ V PSYSA LAV+ AGLVLLGFITT  LG CGK    +                  AP+ A +KK+ A   +P   R         EE+K SQ
Sbjct:    1 MSCKTCLGKFFGILGSNIFFVALVAMVAAVFTQRWAVSSQRDVSVAGMPTNADLQFGIFDMSARVMQEGKVQWSQYSYTWCNAKETTDDGAPWTNERMYCNLLLTAQACSIISLATGLTAGVIAAFLSAGVIVNKRFREIACASSFFMLVQFTSALLTFACWFGINTKINNDLDKAFPGIFVRPSYSAFLAVICAGLVLLGFITTSALGGCGKTAARKVXXXXXXXXXXXXXXXXXAPRQARDKKAKAGAPQPGAQRAAHAQAAGGEEMKESQ 273
The following BLAST results are available for this feature:
BLAST of NO02G00040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30666.17.800e-6552.75hypothetical protein Naga_100091g11 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL016nonsL016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR068ncniR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR000ngnoR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006570NSK006570Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO02G00040.1NO02G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609973gene_10162Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100091g11gene5Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO02G00040.1NO02G00040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO02G00040 ID=NO02G00040|Name=NO02G00040|organism=Nannochloropsis oceanica|type=gene|length=2138bp
TTCAGCAGTCGTCCTGATTTCTTTTCCCTTGACTTTGTCGAGCTTGTGCG
TTCGTCTTTGCAGTGCTCGGGGAGGTTTAGACAAAAAAAATGATTCGTTG
AGTGTTGCTGTTGGTGCGGCCGATTGAACCGGCGCAATCGGACGTCTTCC
ACACCATACTCATTCGTCATTACAATTGCAGGTCGGATGTAAGGATGTGT
TTCTTGTGCGCATTGTTGCTGGCCGCCGGTATCGGAGAAAAAAATGTTTT
ATCCTTGTTCTTACGGATGGACCAAGTCGAGGTAACGTCACGATGTCTAG
GCAAATCTTTGCCGGAGCCAATACACCGACAGGCCCCACACGCGCAGTAA
GGCGCAGGCAACATGAGGGCTAGGGAGCCCTCAAACGAGATACATGCACT
CCCTATATACGTGGAGCGCCGCCTCGCTACTTTAAATTGCATGGGGCCGC
CGCTGCTCATTCCCGCCACTACCTCCCGCAAACAAGCAATCCAGTATCAA
GGGCAACATCAAGGGACATAAATGCCAAGAGGGGATCCCTTGTTTTAGGT
ATCCGCCGGGTGCATACTAAAGTTAATCCTCGTGTCAAATCATGGCGCCC
CTATCATTTTATTATGACCAATTGATCAGTTCAACTTCACCAACAACTAC
ATCCCTCGCACCCCCCTCTTCCTGGAATCACAGAACACTCCATCATCCTC
ATCCCATCTCGCAATCAGCCATGACTTGCAAGTCCTGTATCAGTCGGTTC
TTTGGCATTCTGGGGAGTAACATCTTCTTCATCGCGCTGGTGGCCTTTGC
TGTGGCTGTTTCTACCAACCAGTGGACCGTTTCGCACCAGCGTGGAGTTG
ACGTAAAAGGCGTCCTCACGGACGCTGATATGGAGTTTGGCATATTCGAT
ATGCTTGCCTCGGTGCGACAGGGCGAAGAAGTCATTTGGAGTCAGTACTC
GTACAATTGGTGTGACAGTTTGGATGTTAGGGACCCGAATgtaaggagga
gaagaggagaaagaggaaaaggcggtttgttaaggggacattgattggag
gaatcaaagattattttgtgttttccttagccctcaaccctgatggactc
catcgttcttttatattctcatcttaaaactacctcgttttcccctccat
ctctcccttccttttccacagGCTCCATGGACCGGGGACACTACGTACTG
CAACATGCTTCTGACAGCACAAGTCTGCACCATCATATGTCTGGCCACGG
GTCTGACGGCGGGCATTATTGCTGCTTTCCTTTCAGCGGGCGTGATTGTG
AGCAAGAGCTTCCGGGACATCGCGTGCGCCTCCTCCTTCTTCATGCTAGT
ACAGTTTGCCTCGGCCCTGATTACGTTCGCATGCATGTTTGGCATCAATA
GTAAGATCAACAGAAACCTGGACCATACCTTCCCAGGGTTGGCCGTCACG
CCCTCCTATTCCGCAGCCTTAGCCGTGCTAAGCGCCGGCCTTGTGCTCCT
GGGCTTCATCACCACCTTCATCCTTGGCCGCTGCGGCAAGGAAAGACCGA
CCGAGGCCGACGAGGACGAGGAAAAGGACGAGGAGGTTGGGACCACCGCG
CCCCAATCAGCAGAGAATAAGAAAAGCGGAGCCACAGACGAGCCAGCTTG
GAGTAGGGAGGAGCTGAAAGTGTCGCAGTAACGAAGCAAGCAAGCAAGCA
AGCAATCAGGGGCAACAGCTGCTGAACGTATAGTATATGGGGACTGCAAT
TGGGAGAAGGGGGCCGGGGAAGAAGACAGGAGGGGGCGAGCAAGGAAGTA
ACACGCATTACTGGAGACAGTGATGAGAGCTTTTGTGTGGAAGAACGAAA
TGACTACCCGAAGACGAGAGTGTGGAAATGGGAGAAAAGAAAAATGGGAA
ATACGAGGAAAAGCGAGAGGAAACGACGAAAGCATAGCATATGTGTGTGT
TGCCTGGGTATCTGTGAGCGTGTGTATCTGATTTGTGTGTAGATGAGGAT
CGAGGAAAGGAAACGACATGAGGATGGATGTGAGGAATGACGACGACGAT
GGAAAACAGTGATGAAGAGAAAGCTAGAAAGGCTTCGTTCGGGAAAGCAG
TGGGAGGCTAAACGGAAGCAAACAAAAAAGAGGGGACA
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protein sequence of NO02G00040.1

>NO02G00040.1-protein ID=NO02G00040.1-protein|Name=NO02G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MAPLSFYYDQLISSTSPTTTSLAPPSSWNHRTLHHPHPISQSAMTCKSCI
SRFFGILGSNIFFIALVAFAVAVSTNQWTVSHQRGVDVKGVLTDADMEFG
IFDMLASVRQGEEVIWSQYSYNWCDSLDVRDPNAPWTGDTTYCNMLLTAQ
VCTIICLATGLTAGIIAAFLSAGVIVSKSFRDIACASSFFMLVQFASALI
TFACMFGINSKINRNLDHTFPGLAVTPSYSAALAVLSAGLVLLGFITTFI
LGRCGKERPTEADEDEEKDEEVGTTAPQSAENKKSGATDEPAWSREELKV
SQ*
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Synonyms
Publications