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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:11113..13250 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00040.1 vs.
Match: EWM30666.1 (hypothetical protein Naga_100091g11 [Nannochloropsis gaditana]) HSP 1 Score: 301.6 bits (771), Expect = 2.700e-78 Identity = 166/273 (60.81%), Postives = 199/273 (72.89%), Query Frame = 0
Query: 44 MTCKSCISRFFGILGSNIFFIALVAFAVAVSTNQWTVSHQRGVDVKGVLTDADMEFGIFDMLASVRQGEEVIWSQYSYNWCDSLDVRDPNAPWTGDTTYCNMLLTAQVCTIICLATGLTAGIIAAFLSAGVIVSKSFRDIACASSFFMLVQFASALITFACMFGINSKINRNLDHTFPGLAVTPSYSAALAVLSAGLVLLGFITTFILGRCGK--ERPTEADEDEEKDEEVGTT--APQSAENKKSGA-TDEPAWSR---------EELKVSQ 303
M+CK+C+ +FFGILGSNIFF+ALVA AV T +W VS QR V V G+ T+AD++FGIFDM A V Q +V WSQYSY WC++ + D APWT + YCN+LLTAQ C+II LATGLTAG+IAAFLSAGVIV+K FR+IACASSFFMLVQF SAL+TFAC FGIN+KIN +LD FPG+ V PSYSA LAV+ AGLVLLGFITT LG CGK R +E+E +DEE G AP+ A +KK+ A +P R EE+K SQ
Sbjct: 1 MSCKTCLGKFFGILGSNIFFVALVAMVAAVFTQRWAVSSQRDVSVAGMPTNADLQFGIFDMSARVMQEGKVQWSQYSYTWCNAKETTDDGAPWTNERMYCNLLLTAQACSIISLATGLTAGVIAAFLSAGVIVNKRFREIACASSFFMLVQFTSALLTFACWFGINTKINNDLDKAFPGIFVRPSYSAFLAVICAGLVLLGFITTSALGGCGKTAARKVAEEEEESEDEEEGRAAHAPRQARDKKAKAGAPQPGAQRAAHAQAAGGEEMKESQ 273
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00040.1 ID=NO02G00040.1|Name=NO02G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1957bp TTCAGCAGTCGTCCTGATTTCTTTTCCCTTGACTTTGTCGAGCTTGTGCG TTCGTCTTTGCAGTGCTCGGGGAGGTTTAGACAAAAAAAATGATTCGTTG AGTGTTGCTGTTGGTGCGGCCGATTGAACCGGCGCAATCGGACGTCTTCC ACACCATACTCATTCGTCATTACAATTGCAGGTCGGATGTAAGGATGTGT TTCTTGTGCGCATTGTTGCTGGCCGCCGGTATCGGAGAAAAAAATGTTTT ATCCTTGTTCTTACGGATGGACCAAGTCGAGGTAACGTCACGATGTCTAG GCAAATCTTTGCCGGAGCCAATACACCGACAGGCCCCACACGCGCAGTAA GGCGCAGGCAACATGAGGGCTAGGGAGCCCTCAAACGAGATACATGCACT CCCTATATACGTGGAGCGCCGCCTCGCTACTTTAAATTGCATGGGGCCGC CGCTGCTCATTCCCGCCACTACCTCCCGCAAACAAGCAATCCAGTATCAA GGGCAACATCAAGGGACATAAATGCCAAGAGGGGATCCCTTGTTTTAGGT ATCCGCCGGGTGCATACTAAAGTTAATCCTCGTGTCAAATCATGGCGCCC CTATCATTTTATTATGACCAATTGATCAGTTCAACTTCACCAACAACTAC ATCCCTCGCACCCCCCTCTTCCTGGAATCACAGAACACTCCATCATCCTC ATCCCATCTCGCAATCAGCCATGACTTGCAAGTCCTGTATCAGTCGGTTC TTTGGCATTCTGGGGAGTAACATCTTCTTCATCGCGCTGGTGGCCTTTGC TGTGGCTGTTTCTACCAACCAGTGGACCGTTTCGCACCAGCGTGGAGTTG ACGTAAAAGGCGTCCTCACGGACGCTGATATGGAGTTTGGCATATTCGAT ATGCTTGCCTCGGTGCGACAGGGCGAAGAAGTCATTTGGAGTCAGTACTC GTACAATTGGTGTGACAGTTTGGATGTTAGGGACCCGAATGCTCCATGGA CCGGGGACACTACGTACTGCAACATGCTTCTGACAGCACAAGTCTGCACC ATCATATGTCTGGCCACGGGTCTGACGGCGGGCATTATTGCTGCTTTCCT TTCAGCGGGCGTGATTGTGAGCAAGAGCTTCCGGGACATCGCGTGCGCCT CCTCCTTCTTCATGCTAGTACAGTTTGCCTCGGCCCTGATTACGTTCGCA TGCATGTTTGGCATCAATAGTAAGATCAACAGAAACCTGGACCATACCTT CCCAGGGTTGGCCGTCACGCCCTCCTATTCCGCAGCCTTAGCCGTGCTAA GCGCCGGCCTTGTGCTCCTGGGCTTCATCACCACCTTCATCCTTGGCCGC TGCGGCAAGGAAAGACCGACCGAGGCCGACGAGGACGAGGAAAAGGACGA GGAGGTTGGGACCACCGCGCCCCAATCAGCAGAGAATAAGAAAAGCGGAG CCACAGACGAGCCAGCTTGGAGTAGGGAGGAGCTGAAAGTGTCGCAGTAA CGAAGCAAGCAAGCAAGCAAGCAATCAGGGGCAACAGCTGCTGAACGTAT AGTATATGGGGACTGCAATTGGGAGAAGGGGGCCGGGGAAGAAGACAGGA GGGGGCGAGCAAGGAAGTAACACGCATTACTGGAGACAGTGATGAGAGCT TTTGTGTGGAAGAACGAAATGACTACCCGAAGACGAGAGTGTGGAAATGG GAGAAAAGAAAAATGGGAAATACGAGGAAAAGCGAGAGGAAACGACGAAA GCATAGCATATGTGTGTGTTGCCTGGGTATCTGTGAGCGTGTGTATCTGA TTTGTGTGTAGATGAGGATCGAGGAAAGGAAACGACATGAGGATGGATGT GAGGAATGACGACGACGATGGAAAACAGTGATGAAGAGAAAGCTAGAAAG GCTTCGTTCGGGAAAGCAGTGGGAGGCTAAACGGAAGCAAACAAAAAAGA GGGGACA back to topprotein sequence of NO02G00040.1 >NO02G00040.1-protein ID=NO02G00040.1-protein|Name=NO02G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp MAPLSFYYDQLISSTSPTTTSLAPPSSWNHRTLHHPHPISQSAMTCKSCI SRFFGILGSNIFFIALVAFAVAVSTNQWTVSHQRGVDVKGVLTDADMEFG IFDMLASVRQGEEVIWSQYSYNWCDSLDVRDPNAPWTGDTTYCNMLLTAQ VCTIICLATGLTAGIIAAFLSAGVIVSKSFRDIACASSFFMLVQFASALI TFACMFGINSKINRNLDHTFPGLAVTPSYSAALAVLSAGLVLLGFITTFI LGRCGKERPTEADEDEEKDEEVGTTAPQSAENKKSGATDEPAWSREELKV SQ* back to topmRNA from alignment at chr2:11113..13250- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00040.1 ID=NO02G00040.1|Name=NO02G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2138bp|location=Sequence derived from alignment at chr2:11113..13250- (Nannochloropsis oceanica) TTCAGCAGTCGTCCTGATTTCTTTTCCCTTGACTTTGTCGAGCTTGTGCG
TTCGTCTTTGCAGTGCTCGGGGAGGTTTAGACAAAAAAAATGATTCGTTG
AGTGTTGCTGTTGGTGCGGCCGATTGAACCGGCGCAATCGGACGTCTTCC
ACACCATACTCATTCGTCATTACAATTGCAGGTCGGATGTAAGGATGTGT
TTCTTGTGCGCATTGTTGCTGGCCGCCGGTATCGGAGAAAAAAATGTTTT
ATCCTTGTTCTTACGGATGGACCAAGTCGAGGTAACGTCACGATGTCTAG
GCAAATCTTTGCCGGAGCCAATACACCGACAGGCCCCACACGCGCAGTAA
GGCGCAGGCAACATGAGGGCTAGGGAGCCCTCAAACGAGATACATGCACT
CCCTATATACGTGGAGCGCCGCCTCGCTACTTTAAATTGCATGGGGCCGC
CGCTGCTCATTCCCGCCACTACCTCCCGCAAACAAGCAATCCAGTATCAA
GGGCAACATCAAGGGACATAAATGCCAAGAGGGGATCCCTTGTTTTAGGT
ATCCGCCGGGTGCATACTAAAGTTAATCCTCGTGTCAAATCATGGCGCCC
CTATCATTTTATTATGACCAATTGATCAGTTCAACTTCACCAACAACTAC
ATCCCTCGCACCCCCCTCTTCCTGGAATCACAGAACACTCCATCATCCTC
ATCCCATCTCGCAATCAGCCATGACTTGCAAGTCCTGTATCAGTCGGTTC
TTTGGCATTCTGGGGAGTAACATCTTCTTCATCGCGCTGGTGGCCTTTGC
TGTGGCTGTTTCTACCAACCAGTGGACCGTTTCGCACCAGCGTGGAGTTG
ACGTAAAAGGCGTCCTCACGGACGCTGATATGGAGTTTGGCATATTCGAT
ATGCTTGCCTCGGTGCGACAGGGCGAAGAAGTCATTTGGAGTCAGTACTC
GTACAATTGGTGTGACAGTTTGGATGTTAGGGACCCGAATGTAAGGAGGA
GAAGAGGAGAAAGAGGAAAAGGCGGTTTGTTAAGGGGACATTGATTGGAG
GAATCAAAGATTATTTTGTGTTTTCCTTAGCCCTCAACCCTGATGGACTC
CATCGTTCTTTTATATTCTCATCTTAAAACTACCTCGTTTTCCCCTCCAT
CTCTCCCTTCCTTTTCCACAGGCTCCATGGACCGGGGACACTACGTACTG
CAACATGCTTCTGACAGCACAAGTCTGCACCATCATATGTCTGGCCACGG
GTCTGACGGCGGGCATTATTGCTGCTTTCCTTTCAGCGGGCGTGATTGTG
AGCAAGAGCTTCCGGGACATCGCGTGCGCCTCCTCCTTCTTCATGCTAGT
ACAGTTTGCCTCGGCCCTGATTACGTTCGCATGCATGTTTGGCATCAATA
GTAAGATCAACAGAAACCTGGACCATACCTTCCCAGGGTTGGCCGTCACG
CCCTCCTATTCCGCAGCCTTAGCCGTGCTAAGCGCCGGCCTTGTGCTCCT
GGGCTTCATCACCACCTTCATCCTTGGCCGCTGCGGCAAGGAAAGACCGA
CCGAGGCCGACGAGGACGAGGAAAAGGACGAGGAGGTTGGGACCACCGCG
CCCCAATCAGCAGAGAATAAGAAAAGCGGAGCCACAGACGAGCCAGCTTG
GAGTAGGGAGGAGCTGAAAGTGTCGCAGTAACGAAGCAAGCAAGCAAGCA
AGCAATCAGGGGCAACAGCTGCTGAACGTATAGTATATGGGGACTGCAAT
TGGGAGAAGGGGGCCGGGGAAGAAGACAGGAGGGGGCGAGCAAGGAAGTA
ACACGCATTACTGGAGACAGTGATGAGAGCTTTTGTGTGGAAGAACGAAA
TGACTACCCGAAGACGAGAGTGTGGAAATGGGAGAAAAGAAAAATGGGAA
ATACGAGGAAAAGCGAGAGGAAACGACGAAAGCATAGCATATGTGTGTGT
TGCCTGGGTATCTGTGAGCGTGTGTATCTGATTTGTGTGTAGATGAGGAT
CGAGGAAAGGAAACGACATGAGGATGGATGTGAGGAATGACGACGACGAT
GGAAAACAGTGATGAAGAGAAAGCTAGAAAGGCTTCGTTCGGGAAAGCAG
TGGGAGGCTAAACGGAAGCAAACAAAAAAGAGGGGACA back to topCoding sequence (CDS) from alignment at chr2:11113..13250- >NO02G00040.1 ID=NO02G00040.1|Name=NO02G00040.1|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at chr2:11113..13250- (Nannochloropsis oceanica) ATGGCGCCCCTATCATTTTATTATGACCAATTGATCAGTTCAACTTCACC AACAACTACATCCCTCGCACCCCCCTCTTCCTGGAATCACAGAACACTCC ATCATCCTCATCCCATCTCGCAATCAGCCATGACTTGCAAGTCCTGTATC AGTCGGTTCTTTGGCATTCTGGGGAGTAACATCTTCTTCATCGCGCTGGT GGCCTTTGCTGTGGCTGTTTCTACCAACCAGTGGACCGTTTCGCACCAGC GTGGAGTTGACGTAAAAGGCGTCCTCACGGACGCTGATATGGAGTTTGGC ATATTCGATATGCTTGCCTCGGTGCGACAGGGCGAAGAAGTCATTTGGAG TCAGTACTCGTACAATTGGTGTGACAGTTTGGATGTTAGGGACCCGAATG CTCCATGGACCGGGGACACTACGTACTGCAACATGCTTCTGACAGCACAA GTCTGCACCATCATATGTCTGGCCACGGGTCTGACGGCGGGCATTATTGC TGCTTTCCTTTCAGCGGGCGTGATTGTGAGCAAGAGCTTCCGGGACATCG CGTGCGCCTCCTCCTTCTTCATGCTAGTACAGTTTGCCTCGGCCCTGATT ACGTTCGCATGCATGTTTGGCATCAATAGTAAGATCAACAGAAACCTGGA CCATACCTTCCCAGGGTTGGCCGTCACGCCCTCCTATTCCGCAGCCTTAG CCGTGCTAAGCGCCGGCCTTGTGCTCCTGGGCTTCATCACCACCTTCATC CTTGGCCGCTGCGGCAAGGAAAGACCGACCGAGGCCGACGAGGACGAGGA AAAGGACGAGGAGGTTGGGACCACCGCGCCCCAATCAGCAGAGAATAAGA AAAGCGGAGCCACAGACGAGCCAGCTTGGAGTAGGGAGGAGCTGAAAGTG TCGCAGTAA back to top
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