NO02G00040.1, NO02G00040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00040.1
Unique NameNO02G00040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1957
Alignment locationchr2:11113..13250 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:11113..13250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G00040.1 vs.
Match: EWM30666.1 (hypothetical protein Naga_100091g11 [Nannochloropsis gaditana])

HSP 1 Score: 301.6 bits (771), Expect = 2.700e-78
Identity = 166/273 (60.81%), Postives = 199/273 (72.89%), Query Frame = 0
Query:   44 MTCKSCISRFFGILGSNIFFIALVAFAVAVSTNQWTVSHQRGVDVKGVLTDADMEFGIFDMLASVRQGEEVIWSQYSYNWCDSLDVRDPNAPWTGDTTYCNMLLTAQVCTIICLATGLTAGIIAAFLSAGVIVSKSFRDIACASSFFMLVQFASALITFACMFGINSKINRNLDHTFPGLAVTPSYSAALAVLSAGLVLLGFITTFILGRCGK--ERPTEADEDEEKDEEVGTT--APQSAENKKSGA-TDEPAWSR---------EELKVSQ 303
            M+CK+C+ +FFGILGSNIFF+ALVA   AV T +W VS QR V V G+ T+AD++FGIFDM A V Q  +V WSQYSY WC++ +  D  APWT +  YCN+LLTAQ C+II LATGLTAG+IAAFLSAGVIV+K FR+IACASSFFMLVQF SAL+TFAC FGIN+KIN +LD  FPG+ V PSYSA LAV+ AGLVLLGFITT  LG CGK   R    +E+E +DEE G    AP+ A +KK+ A   +P   R         EE+K SQ
Sbjct:    1 MSCKTCLGKFFGILGSNIFFVALVAMVAAVFTQRWAVSSQRDVSVAGMPTNADLQFGIFDMSARVMQEGKVQWSQYSYTWCNAKETTDDGAPWTNERMYCNLLLTAQACSIISLATGLTAGVIAAFLSAGVIVNKRFREIACASSFFMLVQFTSALLTFACWFGINTKINNDLDKAFPGIFVRPSYSAFLAVICAGLVLLGFITTSALGGCGKTAARKVAEEEEESEDEEEGRAAHAPRQARDKKAKAGAPQPGAQRAAHAQAAGGEEMKESQ 273          
The following BLAST results are available for this feature:
BLAST of NO02G00040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30666.12.700e-7860.81hypothetical protein Naga_100091g11 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00040NO02G00040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00040.1NO02G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00040.1.cds1NO02G00040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00040.1.cds2NO02G00040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00040.1 ID=NO02G00040.1|Name=NO02G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1957bp
TTCAGCAGTCGTCCTGATTTCTTTTCCCTTGACTTTGTCGAGCTTGTGCG
TTCGTCTTTGCAGTGCTCGGGGAGGTTTAGACAAAAAAAATGATTCGTTG
AGTGTTGCTGTTGGTGCGGCCGATTGAACCGGCGCAATCGGACGTCTTCC
ACACCATACTCATTCGTCATTACAATTGCAGGTCGGATGTAAGGATGTGT
TTCTTGTGCGCATTGTTGCTGGCCGCCGGTATCGGAGAAAAAAATGTTTT
ATCCTTGTTCTTACGGATGGACCAAGTCGAGGTAACGTCACGATGTCTAG
GCAAATCTTTGCCGGAGCCAATACACCGACAGGCCCCACACGCGCAGTAA
GGCGCAGGCAACATGAGGGCTAGGGAGCCCTCAAACGAGATACATGCACT
CCCTATATACGTGGAGCGCCGCCTCGCTACTTTAAATTGCATGGGGCCGC
CGCTGCTCATTCCCGCCACTACCTCCCGCAAACAAGCAATCCAGTATCAA
GGGCAACATCAAGGGACATAAATGCCAAGAGGGGATCCCTTGTTTTAGGT
ATCCGCCGGGTGCATACTAAAGTTAATCCTCGTGTCAAATCATGGCGCCC
CTATCATTTTATTATGACCAATTGATCAGTTCAACTTCACCAACAACTAC
ATCCCTCGCACCCCCCTCTTCCTGGAATCACAGAACACTCCATCATCCTC
ATCCCATCTCGCAATCAGCCATGACTTGCAAGTCCTGTATCAGTCGGTTC
TTTGGCATTCTGGGGAGTAACATCTTCTTCATCGCGCTGGTGGCCTTTGC
TGTGGCTGTTTCTACCAACCAGTGGACCGTTTCGCACCAGCGTGGAGTTG
ACGTAAAAGGCGTCCTCACGGACGCTGATATGGAGTTTGGCATATTCGAT
ATGCTTGCCTCGGTGCGACAGGGCGAAGAAGTCATTTGGAGTCAGTACTC
GTACAATTGGTGTGACAGTTTGGATGTTAGGGACCCGAATGCTCCATGGA
CCGGGGACACTACGTACTGCAACATGCTTCTGACAGCACAAGTCTGCACC
ATCATATGTCTGGCCACGGGTCTGACGGCGGGCATTATTGCTGCTTTCCT
TTCAGCGGGCGTGATTGTGAGCAAGAGCTTCCGGGACATCGCGTGCGCCT
CCTCCTTCTTCATGCTAGTACAGTTTGCCTCGGCCCTGATTACGTTCGCA
TGCATGTTTGGCATCAATAGTAAGATCAACAGAAACCTGGACCATACCTT
CCCAGGGTTGGCCGTCACGCCCTCCTATTCCGCAGCCTTAGCCGTGCTAA
GCGCCGGCCTTGTGCTCCTGGGCTTCATCACCACCTTCATCCTTGGCCGC
TGCGGCAAGGAAAGACCGACCGAGGCCGACGAGGACGAGGAAAAGGACGA
GGAGGTTGGGACCACCGCGCCCCAATCAGCAGAGAATAAGAAAAGCGGAG
CCACAGACGAGCCAGCTTGGAGTAGGGAGGAGCTGAAAGTGTCGCAGTAA
CGAAGCAAGCAAGCAAGCAAGCAATCAGGGGCAACAGCTGCTGAACGTAT
AGTATATGGGGACTGCAATTGGGAGAAGGGGGCCGGGGAAGAAGACAGGA
GGGGGCGAGCAAGGAAGTAACACGCATTACTGGAGACAGTGATGAGAGCT
TTTGTGTGGAAGAACGAAATGACTACCCGAAGACGAGAGTGTGGAAATGG
GAGAAAAGAAAAATGGGAAATACGAGGAAAAGCGAGAGGAAACGACGAAA
GCATAGCATATGTGTGTGTTGCCTGGGTATCTGTGAGCGTGTGTATCTGA
TTTGTGTGTAGATGAGGATCGAGGAAAGGAAACGACATGAGGATGGATGT
GAGGAATGACGACGACGATGGAAAACAGTGATGAAGAGAAAGCTAGAAAG
GCTTCGTTCGGGAAAGCAGTGGGAGGCTAAACGGAAGCAAACAAAAAAGA
GGGGACA
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protein sequence of NO02G00040.1

>NO02G00040.1-protein ID=NO02G00040.1-protein|Name=NO02G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MAPLSFYYDQLISSTSPTTTSLAPPSSWNHRTLHHPHPISQSAMTCKSCI
SRFFGILGSNIFFIALVAFAVAVSTNQWTVSHQRGVDVKGVLTDADMEFG
IFDMLASVRQGEEVIWSQYSYNWCDSLDVRDPNAPWTGDTTYCNMLLTAQ
VCTIICLATGLTAGIIAAFLSAGVIVSKSFRDIACASSFFMLVQFASALI
TFACMFGINSKINRNLDHTFPGLAVTPSYSAALAVLSAGLVLLGFITTFI
LGRCGKERPTEADEDEEKDEEVGTTAPQSAENKKSGATDEPAWSREELKV
SQ*
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mRNA from alignment at chr2:11113..13250-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00040.1 ID=NO02G00040.1|Name=NO02G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2138bp|location=Sequence derived from alignment at chr2:11113..13250- (Nannochloropsis oceanica)
TTCAGCAGTCGTCCTGATTTCTTTTCCCTTGACTTTGTCGAGCTTGTGCG TTCGTCTTTGCAGTGCTCGGGGAGGTTTAGACAAAAAAAATGATTCGTTG AGTGTTGCTGTTGGTGCGGCCGATTGAACCGGCGCAATCGGACGTCTTCC ACACCATACTCATTCGTCATTACAATTGCAGGTCGGATGTAAGGATGTGT TTCTTGTGCGCATTGTTGCTGGCCGCCGGTATCGGAGAAAAAAATGTTTT ATCCTTGTTCTTACGGATGGACCAAGTCGAGGTAACGTCACGATGTCTAG GCAAATCTTTGCCGGAGCCAATACACCGACAGGCCCCACACGCGCAGTAA GGCGCAGGCAACATGAGGGCTAGGGAGCCCTCAAACGAGATACATGCACT CCCTATATACGTGGAGCGCCGCCTCGCTACTTTAAATTGCATGGGGCCGC CGCTGCTCATTCCCGCCACTACCTCCCGCAAACAAGCAATCCAGTATCAA GGGCAACATCAAGGGACATAAATGCCAAGAGGGGATCCCTTGTTTTAGGT ATCCGCCGGGTGCATACTAAAGTTAATCCTCGTGTCAAATCATGGCGCCC CTATCATTTTATTATGACCAATTGATCAGTTCAACTTCACCAACAACTAC ATCCCTCGCACCCCCCTCTTCCTGGAATCACAGAACACTCCATCATCCTC ATCCCATCTCGCAATCAGCCATGACTTGCAAGTCCTGTATCAGTCGGTTC TTTGGCATTCTGGGGAGTAACATCTTCTTCATCGCGCTGGTGGCCTTTGC TGTGGCTGTTTCTACCAACCAGTGGACCGTTTCGCACCAGCGTGGAGTTG ACGTAAAAGGCGTCCTCACGGACGCTGATATGGAGTTTGGCATATTCGAT ATGCTTGCCTCGGTGCGACAGGGCGAAGAAGTCATTTGGAGTCAGTACTC GTACAATTGGTGTGACAGTTTGGATGTTAGGGACCCGAATGTAAGGAGGA GAAGAGGAGAAAGAGGAAAAGGCGGTTTGTTAAGGGGACATTGATTGGAG GAATCAAAGATTATTTTGTGTTTTCCTTAGCCCTCAACCCTGATGGACTC CATCGTTCTTTTATATTCTCATCTTAAAACTACCTCGTTTTCCCCTCCAT CTCTCCCTTCCTTTTCCACAGGCTCCATGGACCGGGGACACTACGTACTG CAACATGCTTCTGACAGCACAAGTCTGCACCATCATATGTCTGGCCACGG GTCTGACGGCGGGCATTATTGCTGCTTTCCTTTCAGCGGGCGTGATTGTG AGCAAGAGCTTCCGGGACATCGCGTGCGCCTCCTCCTTCTTCATGCTAGT ACAGTTTGCCTCGGCCCTGATTACGTTCGCATGCATGTTTGGCATCAATA GTAAGATCAACAGAAACCTGGACCATACCTTCCCAGGGTTGGCCGTCACG CCCTCCTATTCCGCAGCCTTAGCCGTGCTAAGCGCCGGCCTTGTGCTCCT GGGCTTCATCACCACCTTCATCCTTGGCCGCTGCGGCAAGGAAAGACCGA CCGAGGCCGACGAGGACGAGGAAAAGGACGAGGAGGTTGGGACCACCGCG CCCCAATCAGCAGAGAATAAGAAAAGCGGAGCCACAGACGAGCCAGCTTG GAGTAGGGAGGAGCTGAAAGTGTCGCAGTAACGAAGCAAGCAAGCAAGCA AGCAATCAGGGGCAACAGCTGCTGAACGTATAGTATATGGGGACTGCAAT TGGGAGAAGGGGGCCGGGGAAGAAGACAGGAGGGGGCGAGCAAGGAAGTA ACACGCATTACTGGAGACAGTGATGAGAGCTTTTGTGTGGAAGAACGAAA TGACTACCCGAAGACGAGAGTGTGGAAATGGGAGAAAAGAAAAATGGGAA ATACGAGGAAAAGCGAGAGGAAACGACGAAAGCATAGCATATGTGTGTGT TGCCTGGGTATCTGTGAGCGTGTGTATCTGATTTGTGTGTAGATGAGGAT CGAGGAAAGGAAACGACATGAGGATGGATGTGAGGAATGACGACGACGAT GGAAAACAGTGATGAAGAGAAAGCTAGAAAGGCTTCGTTCGGGAAAGCAG TGGGAGGCTAAACGGAAGCAAACAAAAAAGAGGGGACA
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Coding sequence (CDS) from alignment at chr2:11113..13250-

>NO02G00040.1 ID=NO02G00040.1|Name=NO02G00040.1|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at chr2:11113..13250- (Nannochloropsis oceanica)
ATGGCGCCCCTATCATTTTATTATGACCAATTGATCAGTTCAACTTCACC
AACAACTACATCCCTCGCACCCCCCTCTTCCTGGAATCACAGAACACTCC
ATCATCCTCATCCCATCTCGCAATCAGCCATGACTTGCAAGTCCTGTATC
AGTCGGTTCTTTGGCATTCTGGGGAGTAACATCTTCTTCATCGCGCTGGT
GGCCTTTGCTGTGGCTGTTTCTACCAACCAGTGGACCGTTTCGCACCAGC
GTGGAGTTGACGTAAAAGGCGTCCTCACGGACGCTGATATGGAGTTTGGC
ATATTCGATATGCTTGCCTCGGTGCGACAGGGCGAAGAAGTCATTTGGAG
TCAGTACTCGTACAATTGGTGTGACAGTTTGGATGTTAGGGACCCGAATG
CTCCATGGACCGGGGACACTACGTACTGCAACATGCTTCTGACAGCACAA
GTCTGCACCATCATATGTCTGGCCACGGGTCTGACGGCGGGCATTATTGC
TGCTTTCCTTTCAGCGGGCGTGATTGTGAGCAAGAGCTTCCGGGACATCG
CGTGCGCCTCCTCCTTCTTCATGCTAGTACAGTTTGCCTCGGCCCTGATT
ACGTTCGCATGCATGTTTGGCATCAATAGTAAGATCAACAGAAACCTGGA
CCATACCTTCCCAGGGTTGGCCGTCACGCCCTCCTATTCCGCAGCCTTAG
CCGTGCTAAGCGCCGGCCTTGTGCTCCTGGGCTTCATCACCACCTTCATC
CTTGGCCGCTGCGGCAAGGAAAGACCGACCGAGGCCGACGAGGACGAGGA
AAAGGACGAGGAGGTTGGGACCACCGCGCCCCAATCAGCAGAGAATAAGA
AAAGCGGAGCCACAGACGAGCCAGCTTGGAGTAGGGAGGAGCTGAAAGTG
TCGCAGTAA
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Synonyms
Publications