NO01G05890, NO01G05890 (gene) Nannochloropsis oceanica

Overview
NameNO01G05890
Unique NameNO01G05890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2576
Alignment locationchr1:1658098..1660673 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1658098..1660673 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO01G05890 vs. NCBI_GenBank
Match: EWM22814.1 (Ankyrin repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 102.8 bits (255), Expect = 1.900e-18
Identity = 52/77 (67.53%), Postives = 66/77 (85.71%), Query Frame = 0 
Query:    4 IDEVFQLIQGRGS--SDKNEAELGRLRLLLSQHKELVHAKGRIDEETPLHLAAAEGQLDVVQLLLQSGANASAADKA 79
            +DE+FQLIQ RGS   +K E +LGRLR+LLSQ+K LVHAKGR+DEETPLH+AAAEG ++ V+LLLQ+GA+ +A DKA
Sbjct:    3 VDEIFQLIQCRGSVTQEKKEVDLGRLRVLLSQNKALVHAKGRMDEETPLHVAAAEGVVEAVRLLLQAGASPAAVDKA 79
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BLAST of NO01G05890 vs. NCBI_GenBank
Match: EWM20522.1 (hypothetical protein Naga_100335g5 [Nannochloropsis gaditana])

HSP 1 Score: 81.3 bits (199), Expect = 5.800e-12
Identity = 42/66 (63.64%), Postives = 55/66 (83.33%), Query Frame = 0 
Query:   16 SSDKNEAELGRLRLLLSQHKELVHAKGRIDEETPLHLAAAEGQ---LDVVQLLLQSGANASAADKA 79
            +S+K E +LGRLR LL+Q+K LVHAKGR+DEETPLH+AAAE +   L+ V+LLLQ+GA+ +A DKA
Sbjct:   52 TSEKKEVDLGRLRALLTQNKALVHAKGRMDEETPLHIAAAEVRIRVLEAVRLLLQAGASPAAVDKA 117
The following BLAST results are available for this feature:
BLAST of NO01G05890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22814.11.900e-1867.53Ankyrin repeat-containing protein [Nannochloropsis... [more]
EWM20522.15.800e-1263.64hypothetical protein Naga_100335g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL001nonsL001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR008ncniR008Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006437NSK006437Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05890.1NO01G05890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05890.2NO01G05890.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|449870gene_11737Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100250g6gene7634Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05890.1NO01G05890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05890.2NO01G05890.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05890 ID=NO01G05890|Name=NO01G05890|organism=Nannochloropsis oceanica|type=gene|length=2576bp
CCTACCCGGAGCCAGCCGCCCGCACCGTTGTCAAGTGGCAACCTCGCCAG
TAGTATGTTGTGGCAAGACTCCTCTACAAACAAAAAGCAAGAGCACATGA
ACATTGTCCATTTACCATTTATTATTTTTTGGTAGGTAGATTGGGCAGCA
GTGCATCTTCCCGGCTCGTACAAGATAAAGCACCAAAAGCGGAAAGAGAG
ACAAGCGAAGCAACCCTCTCTTACTGCTCAACGAAATCACCCTCCCAGAC
AGCTACCAGCGGGCGCCAACGCGCTCCAGCTATGGGCCTTATCGATGAAG
TCTTTCAGCTCATCCAGGGCCGGGGGAGTAGTGACAAGAACGAGGCGGAG
CTGGGACGCTTGCGCCTGCTGCTCAGTCAGCACAAGgtatgtgatgatca
agcatgggggcggacgggcaggggaattgctagctgccatgcgaccagca
gtgtgattggcgtattgctgaggaatatgaattagaagggtagttgcctg
ccgcgctctacattcactagtcttcatgtttgttttgctttatgcatata
ctcactttgtcatcttccctacgttccatcccccactctcgcacagGAAC
TAGTCCATGCGAAAGGACGAATAGACGAGGAGACGCCTTTGCACTTAGCG
GCTGCAGAGgtgcgaattgtggatgttgatgtggaggggggaagggaaga
aaaagaggggcggagagagggtgggagtgaaatgtatagaatcgggcgca
aatggcagaaattcctggccgtacactaatgtacgcgccggcatcctttt
ctcttcaccgttcccttcctttaacgcttagctactctctgaccctccct
tgcctgtacctacagGGCCAGCTGGATGTGGTCCAGCTCCTCCTCCAATC
GGGAGCCAACGCCTCCGCCGCTGACAAAGCGCGGTATACGCCTCTCCACT
GGGCAGCCGGCAAGGGCCACGCCAAGGTGGTGACGgtacgtcgctttgcg
tgctctttttctctcaactttctgtcgtgctccagtgctgacgctttggc
ctccttgcttcgttcttcattagcgattgattgactccgcctcctccctg
cttctaatctccccttcctcctcttcctcctcctcctaatcttcttcttc
cttttatactttcctttctcacagGAGCTGCTGCAGCACCATGCAGACGT
GATGGCCAAGGACGACAATGGCCTCACGCCCCTCCACAGGGCTGCCTACT
Ggtacggaggcaggagggagggagggacggagggatggagggaaggttct
ctctctgctctgggggctagaattggtgatacctcgaggaaaatgaatag
gcgtggcgatgtcttcgttaaatagccatcagtcttacggttcctcttcc
ctcctgcttccctttctccctccctccctccccctttcttcccagGGGCC
AGACGACCTGCGTGAGGGAGCTGCTCAAGGCCGGGGCGGACCCAGATGCG
CAGGACAACCTGCAGCACACGCCCTTCATGATGGCGGCATGGTTCGGCAA
GATAGATTCCGCCCGCGAGATCTTTGAGGAGGTGGGGAGGGGGGGAGGGA
GGAAGGGAGGGAGGGATGGAGGGAGGGAGGGGATATTGGGAACATATGGG
AGGCTTTTCTGCCTTCTTCTTCAACAGGACAGAGCGAGAGATACGGGACG
ACGCCGCAGAGCTGTGAGGGTGCAGCGCTCCTCTCTATCTCCCTTCTCGT
CTCAATCTCTTCCTCCCCATTCGCTGAATCGTAATCAACGGCCCATCACG
CCAAGGCCTATGCACTTCACTCACTCACCTCGCCCATATCCCCCTTCCCG
CCTTCCTCCCTTTCCCTTGCCCCTAGATGAAGCCTCAGCAGATCCAGCTG
CCCAACGTGTGGGGTCTAACACCCTTGGAGTGGGCCAGACAGAGCAATCG
GCCCGAGGTGGCCGCCTTTATCGAGCGTCGTTATAGCAAGCTAGGTCTGC
CGATTGAGCGgtaggggggggggggggggaggaagagggggagggaggag
aagaggaagagacggggagtccacgaatgtgtagtcatgggtcctggcgt
ttgtttgtttctcttctattgtccccctagggaggtgtcctttgttcccg
cctctcgattttgattacttcgtcttcccctatcccctccggactcatcc
agGCCCAACCCCAGCACGGGCAGCCGCTCCTCCGTCCCGCCTTCCCCCTC
GCCGTTGTACTCCGCAGCTGCATCCCCGTTCATCGACTCCAGCACGCCTA
CGACAAGTAGCACGGCCATGAGCAGCAGCCAGGGGGGAGGGGGGGGGATG
CCGCCTCTCCTGCTAGCGGAAGTAGTGGAGGGGAAGGCAACAACAGAAAA
CCTCCCCCACCCCCGCCTGCACCGGCCCAAACTGACTTGCGGTGATTATA
AAGAAGAATTGACAGGAGCCGCTAGGGAGGATCATGGAGGACAGAGTGGG
AAGAAATTGTGGAGGGACGAAGAGCAGTGAAAGAGAACGGCAAAGATGCA
AGAAATGAAAAAATAGTTCGAAATGT
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protein sequence of NO01G05890.1

>NO01G05890.1-protein ID=NO01G05890.1-protein|Name=NO01G05890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MGLIDEVFQLIQGRGSSDKNEAELGRLRLLLSQHKELVHAKGRIDEETPL
HLAAAEGQLDVVQLLLQSGANASAADKARYTPLHWAAGKGHAKVVTELLQ
HHADVMAKDDNGLTPLHRAAYWGQTTCVRELLKAGADPDAQDNLQHTPFM
MAAWFGKIDSAREIFEEMKPQQIQLPNVWGLTPLEWARQSNRPEVAAFIE
RRYSKLGLPIERPNPSTGSRSSVPPSPSPLYSAAASPFIDSSTPTTSSTA
MSSSQGGGGGMPPLLLAEVVEGKATTENLPHPRLHRPKLTCGDYKEELTG
AAREDHGGQSGKKLWRDEEQ*
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protein sequence of NO01G05890.2

>NO01G05890.2-protein ID=NO01G05890.2-protein|Name=NO01G05890.2|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MGLIDEVFQLIQGRGSSDKNEAELGRLRLLLSQHKELVHAKGRIDEETPL
HLAAAEGQLDVVQLLLQSGANASAADKARYTPLHWAAGKGHAKVVTELLQ
HHADVMAKDDNGLTPLHRAAYWGQTTCVRELLKAGADPDAQDNLQHTPFM
MAAWFGKIDSAREIFEEVGRGGGRKGGRDGGREGILGTYGRLFCLLLQQD
RARDTGRRRRAVRVQRSSLSPFSSQSLPPHSLNRNQRPITPRPMHFTHSP
RPYPPSRLPPFPLPLDEASADPAAQRVGSNTLGVGQTEQSARGGRLYRAS
L*
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Synonyms
Publications