NO01G05890.2, NO01G05890.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05890.2
Unique NameNO01G05890.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1585
Alignment locationchr1:1658098..1660673 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1658098..1660673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05890.2 vs.
Match: EWM22814.1 (Ankyrin repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 251.9 bits (642), Expect = 2.500e-63
Identity = 139/246 (56.50%), Postives = 171/246 (69.51%), Query Frame = 0 
Query:    4 IDEVFQLIQGRGS--SDKNEAELGRLRLLLSQHKELVHAKGRIDEETPLHLAAAEGQLDVVQLLLQSGANASAADKARYTPLHWAAGKGHAKVVTELLQHHADVMAKDDNGLTPLHRAAYWGQTTCVRELL-KAGADPDAQDNLQHTPFMMAAWFGKIDSAREIFEEVGRGGGRKGGRDGGREGILGTYGRLFCLLLQQDRARDTGRRRRAVRVQRSSLS-PFSSQSLPPHSLNRNQRPITPRPMH 246
            +DE+FQLIQ RGS   +K E +LGRLR+LLSQ+K LVHAKGR+DEETPLH+AAAEG ++ V+LLLQ+GA+ +A DKA YTPLHWAAGKGH KVV +LL+H+AD  A D NGLTPLHRAAYWGQT C++ELL K GADP+ QD+LQHTPFMMAAWFGKIDSAREIFE++          D     + G        L   + AR + R   A  ++R         + + P S NR+  P +P P H
Sbjct:    3 VDEIFQLIQCRGSVTQEKKEVDLGRLRVLLSQNKALVHAKGRMDEETPLHVAAAEGVVEAVRLLLQAGASPAAVDKAGYTPLHWAAGKGHEKVVEDLLKHNADANAADKNGLTPLHRAAYWGQTACIKELLYKGGADPNVQDHLQHTPFMMAAWFGKIDSAREIFEKM-------KSNDIQLPNVWG--------LTPLEWARQSNRSEVAAFIERRYRKLGLPIERVQPGSSNRSSVPPSPSPSH 233
The following BLAST results are available for this feature:
BLAST of NO01G05890.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22814.12.500e-6356.50Ankyrin repeat-containing protein [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05890NO01G05890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05890.2NO01G05890.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05890.2.cds1NO01G05890.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05890.2.cds2NO01G05890.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05890.2.cds3NO01G05890.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05890.2.cds4NO01G05890.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05890.2.cds5NO01G05890.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05890.2 ID=NO01G05890.2|Name=NO01G05890.2|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp
CCTACCCGGAGCCAGCCGCCCGCACCGTTGTCAAGTGGCAACCTCGCCAG
TAGTATGTTGTGGCAAGACTCCTCTACAAACAAAAAGCAAGAGCACATGA
ACATTGTCCATTTACCATTTATTATTTTTTGGTAGGTAGATTGGGCAGCA
GTGCATCTTCCCGGCTCGTACAAGATAAAGCACCAAAAGCGGAAAGAGAG
ACAAGCGAAGCAACCCTCTCTTACTGCTCAACGAAATCACCCTCCCAGAC
AGCTACCAGCGGGCGCCAACGCGCTCCAGCTATGGGCCTTATCGATGAAG
TCTTTCAGCTCATCCAGGGCCGGGGGAGTAGTGACAAGAACGAGGCGGAG
CTGGGACGCTTGCGCCTGCTGCTCAGTCAGCACAAGGAACTAGTCCATGC
GAAAGGACGAATAGACGAGGAGACGCCTTTGCACTTAGCGGCTGCAGAGG
GCCAGCTGGATGTGGTCCAGCTCCTCCTCCAATCGGGAGCCAACGCCTCC
GCCGCTGACAAAGCGCGGTATACGCCTCTCCACTGGGCAGCCGGCAAGGG
CCACGCCAAGGTGGTGACGGAGCTGCTGCAGCACCATGCAGACGTGATGG
CCAAGGACGACAATGGCCTCACGCCCCTCCACAGGGCTGCCTACTGGGGC
CAGACGACCTGCGTGAGGGAGCTGCTCAAGGCCGGGGCGGACCCAGATGC
GCAGGACAACCTGCAGCACACGCCCTTCATGATGGCGGCATGGTTCGGCA
AGATAGATTCCGCCCGCGAGATCTTTGAGGAGGTGGGGAGGGGGGGAGGG
AGGAAGGGAGGGAGGGATGGAGGGAGGGAGGGGATATTGGGAACATATGG
GAGGCTTTTCTGCCTTCTTCTTCAACAGGACAGAGCGAGAGATACGGGAC
GACGCCGCAGAGCTGTGAGGGTGCAGCGCTCCTCTCTATCTCCCTTCTCG
TCTCAATCTCTTCCTCCCCATTCGCTGAATCGTAATCAACGGCCCATCAC
GCCAAGGCCTATGCACTTCACTCACTCACCTCGCCCATATCCCCCTTCCC
GCCTTCCTCCCTTTCCCTTGCCCCTAGATGAAGCCTCAGCAGATCCAGCT
GCCCAACGTGTGGGGTCTAACACCCTTGGAGTGGGCCAGACAGAGCAATC
GGCCCGAGGTGGCCGCCTTTATCGAGCGTCGTTATAGCAAGCTAGGTCTG
CCGATTGAGCGGCCCAACCCCAGCACGGGCAGCCGCTCCTCCGTCCCGCC
TTCCCCCTCGCCGTTGTACTCCGCAGCTGCATCCCCGTTCATCGACTCCA
GCACGCCTACGACAAGTAGCACGGCCATGAGCAGCAGCCAGGGGGGAGGG
GGGGGGATGCCGCCTCTCCTGCTAGCGGAAGTAGTGGAGGGGAAGGCAAC
AACAGAAAACCTCCCCCACCCCCGCCTGCACCGGCCCAAACTGACTTGCG
GTGATTATAAAGAAGAATTGACAGGAGCCGCTAGGGAGGATCATGGAGGA
CAGAGTGGGAAGAAATTGTGGAGGGACGAAGAGCAGTGAAAGAGAACGGC
AAAGATGCAAGAAATGAAAAAATAGTTCGAAATGT
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protein sequence of NO01G05890.2

>NO01G05890.2-protein ID=NO01G05890.2-protein|Name=NO01G05890.2|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MGLIDEVFQLIQGRGSSDKNEAELGRLRLLLSQHKELVHAKGRIDEETPL
HLAAAEGQLDVVQLLLQSGANASAADKARYTPLHWAAGKGHAKVVTELLQ
HHADVMAKDDNGLTPLHRAAYWGQTTCVRELLKAGADPDAQDNLQHTPFM
MAAWFGKIDSAREIFEEVGRGGGRKGGRDGGREGILGTYGRLFCLLLQQD
RARDTGRRRRAVRVQRSSLSPFSSQSLPPHSLNRNQRPITPRPMHFTHSP
RPYPPSRLPPFPLPLDEASADPAAQRVGSNTLGVGQTEQSARGGRLYRAS
L*
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mRNA from alignment at chr1:1658098..1660673+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05890.2 ID=NO01G05890.2|Name=NO01G05890.2|organism=Nannochloropsis oceanica|type=mRNA|length=2576bp|location=Sequence derived from alignment at chr1:1658098..1660673+ (Nannochloropsis oceanica)
CCTACCCGGAGCCAGCCGCCCGCACCGTTGTCAAGTGGCAACCTCGCCAG
TAGTATGTTGTGGCAAGACTCCTCTACAAACAAAAAGCAAGAGCACATGA
ACATTGTCCATTTACCATTTATTATTTTTTGGTAGGTAGATTGGGCAGCA
GTGCATCTTCCCGGCTCGTACAAGATAAAGCACCAAAAGCGGAAAGAGAG
ACAAGCGAAGCAACCCTCTCTTACTGCTCAACGAAATCACCCTCCCAGAC
AGCTACCAGCGGGCGCCAACGCGCTCCAGCTATGGGCCTTATCGATGAAG
TCTTTCAGCTCATCCAGGGCCGGGGGAGTAGTGACAAGAACGAGGCGGAG
CTGGGACGCTTGCGCCTGCTGCTCAGTCAGCACAAGGTATGTGATGATCA
AGCATGGGGGCGGACGGGCAGGGGAATTGCTAGCTGCCATGCGACCAGCA
GTGTGATTGGCGTATTGCTGAGGAATATGAATTAGAAGGGTAGTTGCCTG
CCGCGCTCTACATTCACTAGTCTTCATGTTTGTTTTGCTTTATGCATATA
CTCACTTTGTCATCTTCCCTACGTTCCATCCCCCACTCTCGCACAGGAAC
TAGTCCATGCGAAAGGACGAATAGACGAGGAGACGCCTTTGCACTTAGCG
GCTGCAGAGGTGCGAATTGTGGATGTTGATGTGGAGGGGGGAAGGGAAGA
AAAAGAGGGGCGGAGAGAGGGTGGGAGTGAAATGTATAGAATCGGGCGCA
AATGGCAGAAATTCCTGGCCGTACACTAATGTACGCGCCGGCATCCTTTT
CTCTTCACCGTTCCCTTCCTTTAACGCTTAGCTACTCTCTGACCCTCCCT
TGCCTGTACCTACAGGGCCAGCTGGATGTGGTCCAGCTCCTCCTCCAATC
GGGAGCCAACGCCTCCGCCGCTGACAAAGCGCGGTATACGCCTCTCCACT
GGGCAGCCGGCAAGGGCCACGCCAAGGTGGTGACGGTACGTCGCTTTGCG
TGCTCTTTTTCTCTCAACTTTCTGTCGTGCTCCAGTGCTGACGCTTTGGC
CTCCTTGCTTCGTTCTTCATTAGCGATTGATTGACTCCGCCTCCTCCCTG
CTTCTAATCTCCCCTTCCTCCTCTTCCTCCTCCTCCTAATCTTCTTCTTC
CTTTTATACTTTCCTTTCTCACAGGAGCTGCTGCAGCACCATGCAGACGT
GATGGCCAAGGACGACAATGGCCTCACGCCCCTCCACAGGGCTGCCTACT
GGTACGGAGGCAGGAGGGAGGGAGGGACGGAGGGATGGAGGGAAGGTTCT
CTCTCTGCTCTGGGGGCTAGAATTGGTGATACCTCGAGGAAAATGAATAG
GCGTGGCGATGTCTTCGTTAAATAGCCATCAGTCTTACGGTTCCTCTTCC
CTCCTGCTTCCCTTTCTCCCTCCCTCCCTCCCCCTTTCTTCCCAGGGGCC
AGACGACCTGCGTGAGGGAGCTGCTCAAGGCCGGGGCGGACCCAGATGCG
CAGGACAACCTGCAGCACACGCCCTTCATGATGGCGGCATGGTTCGGCAA
GATAGATTCCGCCCGCGAGATCTTTGAGGAGGTGGGGAGGGGGGGAGGGA
GGAAGGGAGGGAGGGATGGAGGGAGGGAGGGGATATTGGGAACATATGGG
AGGCTTTTCTGCCTTCTTCTTCAACAGGACAGAGCGAGAGATACGGGACG
ACGCCGCAGAGCTGTGAGGGTGCAGCGCTCCTCTCTATCTCCCTTCTCGT
CTCAATCTCTTCCTCCCCATTCGCTGAATCGTAATCAACGGCCCATCACG
CCAAGGCCTATGCACTTCACTCACTCACCTCGCCCATATCCCCCTTCCCG
CCTTCCTCCCTTTCCCTTGCCCCTAGATGAAGCCTCAGCAGATCCAGCTG
CCCAACGTGTGGGGTCTAACACCCTTGGAGTGGGCCAGACAGAGCAATCG
GCCCGAGGTGGCCGCCTTTATCGAGCGTCGTTATAGCAAGCTAGGTCTGC
CGATTGAGCGGTAGGGGGGGGGGGGGGGGAGGAAGAGGGGGAGGGAGGAG
AAGAGGAAGAGACGGGGAGTCCACGAATGTGTAGTCATGGGTCCTGGCGT
TTGTTTGTTTCTCTTCTATTGTCCCCCTAGGGAGGTGTCCTTTGTTCCCG
CCTCTCGATTTTGATTACTTCGTCTTCCCCTATCCCCTCCGGACTCATCC
AGGCCCAACCCCAGCACGGGCAGCCGCTCCTCCGTCCCGCCTTCCCCCTC
GCCGTTGTACTCCGCAGCTGCATCCCCGTTCATCGACTCCAGCACGCCTA
CGACAAGTAGCACGGCCATGAGCAGCAGCCAGGGGGGAGGGGGGGGGATG
CCGCCTCTCCTGCTAGCGGAAGTAGTGGAGGGGAAGGCAACAACAGAAAA
CCTCCCCCACCCCCGCCTGCACCGGCCCAAACTGACTTGCGGTGATTATA
AAGAAGAATTGACAGGAGCCGCTAGGGAGGATCATGGAGGACAGAGTGGG
AAGAAATTGTGGAGGGACGAAGAGCAGTGAAAGAGAACGGCAAAGATGCA
AGAAATGAAAAAATAGTTCGAAATGT
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Coding sequence (CDS) from alignment at chr1:1658098..1660673+

>NO01G05890.2 ID=NO01G05890.2|Name=NO01G05890.2|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at chr1:1658098..1660673+ (Nannochloropsis oceanica)
ATGGGCCTTATCGATGAAGTCTTTCAGCTCATCCAGGGCCGGGGGAGTAG
TGACAAGAACGAGGCGGAGCTGGGACGCTTGCGCCTGCTGCTCAGTCAGC
ACAAGGAACTAGTCCATGCGAAAGGACGAATAGACGAGGAGACGCCTTTG
CACTTAGCGGCTGCAGAGGGCCAGCTGGATGTGGTCCAGCTCCTCCTCCA
ATCGGGAGCCAACGCCTCCGCCGCTGACAAAGCGCGGTATACGCCTCTCC
ACTGGGCAGCCGGCAAGGGCCACGCCAAGGTGGTGACGGAGCTGCTGCAG
CACCATGCAGACGTGATGGCCAAGGACGACAATGGCCTCACGCCCCTCCA
CAGGGCTGCCTACTGGGGCCAGACGACCTGCGTGAGGGAGCTGCTCAAGG
CCGGGGCGGACCCAGATGCGCAGGACAACCTGCAGCACACGCCCTTCATG
ATGGCGGCATGGTTCGGCAAGATAGATTCCGCCCGCGAGATCTTTGAGGA
GGTGGGGAGGGGGGGAGGGAGGAAGGGAGGGAGGGATGGAGGGAGGGAGG
GGATATTGGGAACATATGGGAGGCTTTTCTGCCTTCTTCTTCAACAGGAC
AGAGCGAGAGATACGGGACGACGCCGCAGAGCTGTGAGGGTGCAGCGCTC
CTCTCTATCTCCCTTCTCGTCTCAATCTCTTCCTCCCCATTCGCTGAATC
GTAATCAACGGCCCATCACGCCAAGGCCTATGCACTTCACTCACTCACCT
CGCCCATATCCCCCTTCCCGCCTTCCTCCCTTTCCCTTGCCCCTAGATGA
AGCCTCAGCAGATCCAGCTGCCCAACGTGTGGGGTCTAACACCCTTGGAG
TGGGCCAGACAGAGCAATCGGCCCGAGGTGGCCGCCTTTATCGAGCGTCG
TTATAG
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Synonyms
Publications